mRNA_P-wetherbeei_contig52432.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52432.1.1
Unique NamemRNA_P-wetherbeei_contig52432.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52432.1.1 vs. uniprot
Match: A0A3D5DES0_9GAMM (BolA family transcriptional regulator n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DES0_9GAMM)

HSP 1 Score: 120 bits (301), Expect = 5.310e-34
Identity = 57/83 (68.67%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    1 MTPNEIRQMIEAGLAGAEVHVDGDGQHFVARVVSDSFAGLSMIKQHRLVYATLGDSMGGAIHALSIQTYTKDAWEKARKFQTL 249
            MT  EI+ MIE+G+  AE +VDGDG HFVA+VVSDSF    MIKQH++VYATLGDSM  AIHALSIQTYT++AWEKARK + +
Sbjct:    1 MTGEEIKMMIESGIPEAEAYVDGDGSHFVAQVVSDSFVNCPMIKQHKMVYATLGDSMESAIHALSIQTYTREAWEKARKLKVM 83          
BLAST of mRNA_P-wetherbeei_contig52432.1.1 vs. uniprot
Match: A0A1Z9UAV3_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UAV3_9GAMM)

HSP 1 Score: 117 bits (293), Expect = 9.070e-33
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 1
Query:    1 MTPNEIRQMIEAGLAGAEVHVDGDGQHFVARVVSDSFAGLSMIKQHRLVYATLGDSMGGAIHALSIQTYTKDAWEKARKFQTL 249
            MTP +I+ MIE+G+ G+E HV+GDG HF A V+SD F G+ MIKQH++VYATLGDSM  AIHA SIQTYT +AW KA+KF+ L
Sbjct:    1 MTPEQIKLMIESGIEGSEAHVEGDGSHFFAHVISDLFDGVPMIKQHKMVYATLGDSMEEAIHAFSIQTYTVEAWGKAKKFKVL 83          
BLAST of mRNA_P-wetherbeei_contig52432.1.1 vs. uniprot
Match: A0A1Z8WVE0_9GAMM (Uncharacterized protein n=1 Tax=Methylococcaceae bacterium TMED69 TaxID=1986766 RepID=A0A1Z8WVE0_9GAMM)

HSP 1 Score: 108 bits (269), Expect = 4.020e-29
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    1 MTPNEIRQMIEAGLAGAEVHVDGDGQHFVARVVSDSFAGLSMIKQHRLVYATLGDSMGGAIHALSIQTYTKDAWEKARKFQ 243
            M   EI+ +IE GL  +EV V+GDG HFV +VVSD+F GL ++KQHRLVY+TLG  +GG IHALSIQTYTK +WEK +  Q
Sbjct:    1 MNTEEIKNLIEVGLPESEVTVEGDGNHFVVKVVSDTFEGLPVLKQHRLVYSTLGQRVGGEIHALSIQTYTKGSWEKVKNLQ 81          
BLAST of mRNA_P-wetherbeei_contig52432.1.1 vs. uniprot
Match: A0A523PEW4_9PROT (BolA/IbaG family iron-sulfur metabolism protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523PEW4_9PROT)

HSP 1 Score: 105 bits (262), Expect = 4.690e-28
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    1 MTPNEIRQMIEAGLAGAEVHVDGDGQHFVARVVSDSFAGLSMIKQHRLVYATLGDSMGGAIHALSIQTYTKDAWEKARKFQ 243
            MT  +I+ MIEAG+  AE  VDGDG HFVARV+S+ FA   MIKQH++VYA LGD+M  AIHALSIQ +T++ W+KA K Q
Sbjct:    1 MTSEDIKAMIEAGIPQAEAIVDGDGSHFVARVISERFADCPMIKQHKMVYAALGDAMESAIHALSIQCFTREQWDKAEKSQ 81          
BLAST of mRNA_P-wetherbeei_contig52432.1.1 vs. uniprot
Match: A0A523P3I7_9PROT (BolA/IbaG family iron-sulfur metabolism protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P3I7_9PROT)

HSP 1 Score: 100 bits (248), Expect = 6.200e-26
Identity = 45/74 (60.81%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    1 MTPNEIRQMIEAGLAGAEVHVDGDGQHFVARVVSDSFAGLSMIKQHRLVYATLGDSMGGAIHALSIQTYTKDAW 222
            M P +I+Q+IE GLAGA+ +V GDGQHF A+VVSD+FAG +M++QH+LVY  LGD M   +HALSI+TYT + W
Sbjct:    1 MQPEQIKQLIEQGLAGAQANVSGDGQHFEAQVVSDAFAGKTMVQQHQLVYQALGDKMKQEVHALSIRTYTPEQW 74          
BLAST of mRNA_P-wetherbeei_contig52432.1.1 vs. uniprot
Match: A0A3B0XTY6_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0XTY6_9ZZZZ)

HSP 1 Score: 94.7 bits (234), Expect = 7.540e-24
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    1 MTPNEIRQMIEAGLAGAEVHVDGDGQHFVARVVSDSFAGLSMIKQHRLVYATLGDSMGGAIHALSIQTYTKDAWEK 228
            M P+E++ +IE G+ GA+V V GDG HF A +VSD+F G SM++QH+LVY+ LGD M GA+HALS +T+T   W K
Sbjct:    1 MQPDELKTVIEEGIPGAQVDVKGDGDHFEATIVSDTFEGKSMVQQHQLVYSALGDLMKGAVHALSFRTFTTTEWSK 76          
BLAST of mRNA_P-wetherbeei_contig52432.1.1 vs. uniprot
Match: A0A4R8IK32_9GAMM (Acid stress-induced BolA-like protein IbaG/YrbA n=1 Tax=Thiohalophilus thiocyanatoxydans TaxID=381308 RepID=A0A4R8IK32_9GAMM)

HSP 1 Score: 92.8 bits (229), Expect = 5.280e-23
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 MTPNEIRQMIEAGLAGAEVHVDGDGQHFVARVVSDSFAGLSMIKQHRLVYATLGDSM-GGAIHALSIQTYTKDAWEKARKFQ 243
            M+P+E++Q+IEAG+ G E  V+GDG HF A VVS  F GLS +K+ ++VY T+ D +  G +HALSI+ YT D WEKAR+ Q
Sbjct:    1 MSPDEVKQLIEAGIPGCEATVNGDGSHFDAIVVSPDFEGLSPVKKQQMVYGTVTDKITSGELHALSIKAYTPDEWEKARELQ 82          
BLAST of mRNA_P-wetherbeei_contig52432.1.1 vs. uniprot
Match: A0A7K4ETT9_9EURY (BolA/IbaG family iron-sulfur metabolism protein n=1 Tax=Halobacteria archaeon TaxID=2670410 RepID=A0A7K4ETT9_9EURY)

HSP 1 Score: 92.4 bits (228), Expect = 6.710e-23
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 MTPNEIRQMIEAGLAGAEVHVDGDGQHFVARVVSDSFAGLSMIKQHRLVYATLGDSMGGAIHALSIQTYTKDAWEKARKFQ 243
            M  +EI  +I+AG+  AEV V GDG HF A V+S+ F   +M+KQH+LVY TLGD MGG IHAL++ T+T + W   R+ Q
Sbjct:    1 MQSSEIEALIKAGIPDAEVIVQGDGDHFEATVISEQFENCTMVKQHQLVYGTLGDRMGGEIHALALHTHTPEEWASRRRIQ 81          
BLAST of mRNA_P-wetherbeei_contig52432.1.1 vs. uniprot
Match: A0A661BVB7_9GAMM (BolA family transcriptional regulator n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661BVB7_9GAMM)

HSP 1 Score: 92.4 bits (228), Expect = 7.090e-23
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 MTPNEIRQMIEAGLAGAEVHVDGDGQHFVARVVSDSFAGLSMIKQHRLVYATLGDSMGGAIHALSIQTYTKDAWEKARKFQ 243
            M   EI+Q IE G    EV+V+GDG+HF A VV D F+  +M++QH++VY TLGD +GG IHALSI TYTK+ W++ +  +
Sbjct:    1 MQVEEIKQKIEQGFTDCEVYVEGDGRHFQAVVVCDVFSDKNMVQQHQMVYQTLGDRVGGDIHALSINTYTKEEWQQQKNLK 81          
BLAST of mRNA_P-wetherbeei_contig52432.1.1 vs. uniprot
Match: A0A1G6TW65_9GAMM (Transcriptional regulator, BolA protein family n=2 Tax=Xanthomonadales TaxID=135614 RepID=A0A1G6TW65_9GAMM)

HSP 1 Score: 92.0 bits (227), Expect = 8.780e-23
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 MTPNEIRQMIEAGLAGAEVHVDGD-GQHFVARVVSDSFAGLSMIKQHRLVYATLGDSMGGAIHALSIQTYT 210
            MTP  IR++IEAGL GA  HV GD G HF A V+SD+FAG   + +HR+VYATLGD MGGAIHALS++T T
Sbjct:    1 MTPETIRELIEAGLPGARAHVQGDDGVHFEALVISDAFAGKLPLARHRMVYATLGDLMGGAIHALSLKTQT 71          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52432.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DES0_9GAMM5.310e-3468.67BolA family transcriptional regulator n=1 Tax=Gamm... [more]
A0A1Z9UAV3_9GAMM9.070e-3365.06Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A1Z8WVE0_9GAMM4.020e-2961.73Uncharacterized protein n=1 Tax=Methylococcaceae b... [more]
A0A523PEW4_9PROT4.690e-2861.73BolA/IbaG family iron-sulfur metabolism protein n=... [more]
A0A523P3I7_9PROT6.200e-2660.81BolA/IbaG family iron-sulfur metabolism protein n=... [more]
A0A3B0XTY6_9ZZZZ7.540e-2455.26Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A4R8IK32_9GAMM5.280e-2353.66Acid stress-induced BolA-like protein IbaG/YrbA n=... [more]
A0A7K4ETT9_9EURY6.710e-2351.85BolA/IbaG family iron-sulfur metabolism protein n=... [more]
A0A661BVB7_9GAMM7.090e-2351.85BolA family transcriptional regulator n=1 Tax=Gamm... [more]
A0A1G6TW65_9GAMM8.780e-2364.79Transcriptional regulator, BolA protein family n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52432contigP-wetherbeei_contig52432:2..250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1384054.N790_08200
Preferred nameSN15_13775
PFAMsBolA
Model size249
Max annot lvl135614|Xanthomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.27e-21
EggNOG OGsCOG5007@1|root,COG5007@2|Bacteria,1R3MK@1224|Proteobacteria,1SE4M@1236|Gammaproteobacteria,1X7EE@135614|Xanthomonadales
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_005620.1
DescriptionBelongs to the BolA IbaG family
Cds size249
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186785.5855193-CDS-P-wetherbeei_contig52432:1..2501683186785.5855193-CDS-P-wetherbeei_contig52432:1..250Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52432 2..250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52432.1.1prot_P-wetherbeei_contig52432.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52432 2..250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52432.1.1

>prot_P-wetherbeei_contig52432.1.1 ID=prot_P-wetherbeei_contig52432.1.1|Name=mRNA_P-wetherbeei_contig52432.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
MTPNEIRQMIEAGLAGAEVHVDGDGQHFVARVVSDSFAGLSMIKQHRLVY
ATLGDSMGGAIHALSIQTYTKDAWEKARKFQTL
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mRNA from alignment at P-wetherbeei_contig52432:2..250-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52432.1.1 ID=mRNA_P-wetherbeei_contig52432.1.1|Name=mRNA_P-wetherbeei_contig52432.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig52432:2..250- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTCCCAACGAAATCCGTCAAATGATCGAAGCCGGCCTGGCCGGTGC CGAAGTGCATGTAGATGGCGATGGCCAGCACTTCGTCGCGCGCGTGGTCA GTGACAGCTTCGCAGGCCTGTCCATGATCAAGCAGCACCGCCTGGTTTAC GCCACGCTCGGCGACAGCATGGGCGGCGCGATTCATGCGTTATCCATTCA GACCTATACCAAGGACGCCTGGGAAAAGGCGCGCAAGTTCCAGACGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52432:2..250-

>mRNA_P-wetherbeei_contig52432.1.1 ID=mRNA_P-wetherbeei_contig52432.1.1|Name=mRNA_P-wetherbeei_contig52432.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig52432:2..250- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTCCCAACGAAATCCGTCAAATGATCGAAGCCGGCCTGGCCGGTGC
CGAAGTGCATGTAGATGGCGATGGCCAGCACTTCGTCGCGCGCGTGGTCA
GTGACAGCTTCGCAGGCCTGTCCATGATCAAGCAGCACCGCCTGGTTTAC
GCCACGCTCGGCGACAGCATGGGCGGCGCGATTCATGCGTTATCCATTCA
GACCTATACCAAGGACGCCTGGGAAAAGGCGCGCAAGTTCCAGACGCTC
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