mRNA_P-wetherbeei_contig52383.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52383.1.1
Unique NamemRNA_P-wetherbeei_contig52383.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52383.1.1 vs. uniprot
Match: UPI001D10E2F4 (amidase n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D10E2F4)

HSP 1 Score: 205 bits (522), Expect = 9.090e-61
Identity = 121/179 (67.60%), Postives = 140/179 (78.21%), Query Frame = 1
Query:   19 AGRLTARELVERSL-AAAERAGELGAVVSLRAERALAEADERDRLDPSE---RGRLHGIPITVKDVIDVAGLPTGAGSAAYLTHPARDAVAVARLRAAGAIVVGKVATHEFALGVTTPQARNPADPSRIPGGSSGGSGIAVATGFGLASLGTDTRASIRVPAALCGVVGVKPTYGAVPT 543
            AG  ++ EL++RS+ A A R  EL  VV++    ALAEA   D L+ +E   RG LHG+PITVKDVIDVAGLPT  GS AYL HP RDAVAVAR R+ GA+   KVATHEFALGVT+PQ+RNP DPSRIPGGSSGGS +AVATG GLAS+GTDTRASIR+P+AL G VG+KPTYG VPT
Sbjct:   82 AGMTSSVELLQRSVDAVAARNEELVGVVAMDVHAALAEAAALD-LEAAEGVWRGPLHGVPITVKDVIDVAGLPTRCGSDAYLDHPERDAVAVARARSGGAVPFAKVATHEFALGVTSPQSRNPRDPSRIPGGSSGGSAVAVATGMGLASIGTDTRASIRIPSALSGAVGLKPTYGRVPT 259          
BLAST of mRNA_P-wetherbeei_contig52383.1.1 vs. uniprot
Match: UPI001EEEAC64 (amidase n=1 Tax=Solirubrobacter sp. CPCC 204708 TaxID=2282478 RepID=UPI001EEEAC64)

HSP 1 Score: 196 bits (499), Expect = 5.950e-58
Identity = 119/173 (68.79%), Postives = 130/173 (75.14%), Query Frame = 1
Query:   31 TARELVERSLAAAERAG--ELGAVVSLRAERALAEADERDRLDPSERGRLHGIPITVKDVIDVAGLPTGAGSAAYLTHPARDAVAVARLRAAGAIVVGKVATHEFALGVTTPQARNPADPSRIPGGSSGGSGIAVATGFGLASLGTDTRASIRVPAALCGVVGVKPTYGAVPT 543
            T R  VER  AA ER    E  A V + AERALAEA  RD   P  RG LHGIP++VKDVI VAG+PT  GS A+   P  DA AV   RAAGA+V+GK +THEFALGVT+PQARNP DP+RIPGGSSGGS IAVATG GL SLGTDTRASIRVPAALCGVVG+KPTYG V T
Sbjct:   32 TGRSSVERVEAALERIAQDEWTAFVHVDAERALAEARARDAEPP--RGPLHGIPVSVKDVIHVAGMPTRCGSDAFHQMPEVDAAAVDLWRAAGAVVLGKTSTHEFALGVTSPQARNPHDPTRIPGGSSGGSAIAVATGMGLVSLGTDTRASIRVPAALCGVVGLKPTYGTVST 202          
BLAST of mRNA_P-wetherbeei_contig52383.1.1 vs. uniprot
Match: UPI00041E3891 (amidase n=1 Tax=Solirubrobacter soli TaxID=363832 RepID=UPI00041E3891)

HSP 1 Score: 187 bits (475), Expect = 4.120e-54
Identity = 115/176 (65.34%), Postives = 128/176 (72.73%), Query Frame = 1
Query:   22 GRLTARELVERSLAAAERAGELGAVVSLRAERALAEADERDR--LDPSERGRLHGIPITVKDVIDVAGLPTGAGSAAYLTHPARDAVAVARLRAAGAIVVGKVATHEFALGVTTPQARNPADPSRIPGGSSGGSGIAVATGFGLASLGTDTRASIRVPAALCGVVGVKPTYGAVPT 543
            G  T  EL E +LA   +  E  A V + AE ALAEA  RD        RG LHGIP++VKDVIDV G+ T  GS AY   P  DA  V   RAAGA+++GK +THEFALGVT+PQARNP DP+RIPGGSSGGS IAVATG GLASLGTDTRASIRVPAALCGVVG+KPTYG VPT
Sbjct:   61 GESTCVELTELALARIAQ-DEWTAFVEVCAEAALAEAAARDAELRAGKRRGPLHGIPVSVKDVIDVRGVRTRCGSDAYDAVPEVDADGVDLWRAAGAVILGKTSTHEFALGVTSPQARNPHDPTRIPGGSSGGSAIAVATGMGLASLGTDTRASIRVPAALCGVVGLKPTYGTVPT 235          
BLAST of mRNA_P-wetherbeei_contig52383.1.1 vs. uniprot
Match: A0A660LC85_9ACTN (Aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Solirubrobacter pauli TaxID=166793 RepID=A0A660LC85_9ACTN)

HSP 1 Score: 184 bits (466), Expect = 9.790e-53
Identity = 103/153 (67.32%), Postives = 117/153 (76.47%), Query Frame = 1
Query:   91 AVVSLRAERALAEADERDR--LDPSERGRLHGIPITVKDVIDVAGLPTGAGSAAYLTHPARDAVAVARLRAAGAIVVGKVATHEFALGVTTPQARNPADPSRIPGGSSGGSGIAVATGFGLASLGTDTRASIRVPAALCGVVGVKPTYGAVPT 543
            A V + A+ ALAEA  RD        RG LHG+P++VKDVI V G+PT  GS A+   P  DA AV   RAAGA+++GK +THEFALGVT+PQARNP DP+RIPGGSSGGS IAVATG G ASLGTDTRASIRVPAALCGVVG+KPTY  VPT
Sbjct:   84 AFVHVDAQAALAEARARDAELRAGRRRGPLHGVPVSVKDVIHVGGMPTRCGSDAFHQRPEADAAAVDLWRAAGAVILGKTSTHEFALGVTSPQARNPHDPTRIPGGSSGGSAIAVATGMGFASLGTDTRASIRVPAALCGVVGLKPTYETVPT 236          
BLAST of mRNA_P-wetherbeei_contig52383.1.1 vs. uniprot
Match: A0A2W1AV24_9CHLR (Aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W1AV24_9CHLR)

HSP 1 Score: 184 bits (466), Expect = 1.040e-52
Identity = 107/175 (61.14%), Postives = 127/175 (72.57%), Query Frame = 1
Query:   25 RLTARELVERSLAAAERAGELGAVVSLRAERALAEADERDR--LDPSERGRLHGIPITVKDVIDVAGLPTGAGSAAYLTHPARDAVAVARLRAAGAIVVGKVATHEFALGVTTPQARNPADPSRIPGGSSGGSGIAVATGFGLASLGTDTRASIRVPAALCGVVGVKPTYGAVPT 543
            R+T+ +LV+ +L AAE A +L  +  L A  ALA A + D    +   RG LHGIP+TVKDVI VAG+PTG+GS AY   P  D  AV RLR AGAI++GK  THEFALGVTTPQA +P DP+RIPGGSSGGS I +  G GLASLGTDTRAS+R P+AL G VG KPT+G VPT
Sbjct:   68 RVTSVDLVQTALQAAEDASDLNGMAHLDASGALAHARKLDEEATNGLRRGPLHGIPMTVKDVIHVAGMPTGSGSNAYDRTPETDPTAVTRLRQAGAIILGKATTHEFALGVTTPQAHHPDDPTRIPGGSSGGSVIGIRRGIGLASLGTDTRASLRNPSALSGTVGFKPTFGTVPT 242          
BLAST of mRNA_P-wetherbeei_contig52383.1.1 vs. uniprot
Match: A0A0M8VAF8_9ACTN (Amidase domain-containing protein n=17 Tax=Streptomyces TaxID=1883 RepID=A0A0M8VAF8_9ACTN)

HSP 1 Score: 165 bits (417), Expect = 1.060e-45
Identity = 107/185 (57.84%), Postives = 121/185 (65.41%), Query Frame = 1
Query:    7 TEIAAGRLTARELVERSLAAAERAGELGAVVSLRAERALAEADERDRLDPSERGRLHGIPITVKDVIDVAGLPTGAGSAAYLTH-PARDAVAVARLRAAGAIVVGKVATHEFALGVTTP-----QARNPADPSRIPGGSSGGSGIAVATGFGLASLGTDTRASIRVPAALCGVVGVKPTYGAVPT 543
            + +A G LT+  L E  LA AERAG+LGA V+L A+RALAEA   DR     RG LHG+PI VKD I VAGLP  AG  A     P RDA A+ RLRAAGAIV+GK   HE ALG TT       ARNPADP R  GGSSGG+  AVA G   A LGTDT  S+RVPAAL G+ G++PT G  PT
Sbjct:    6 SRLATGTLTSVSLTEELLARAERAGDLGAFVTLDADRALAEAAAADRRPG--RGPLHGLPIAVKDNIHVAGLPNTAGCEALAGFVPDRDAQAITRLRAAGAIVLGKTNMHELALGATTTGGPYGPARNPADPDRFAGGSSGGTATAVAAGLAPAGLGTDTGGSVRVPAALTGIAGLRPTTGRYPT 188          
BLAST of mRNA_P-wetherbeei_contig52383.1.1 vs. uniprot
Match: A0A7K2LVQ9_9ACTN (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A (Fragment) n=1 Tax=Streptomyces sp. SID5998 TaxID=2690316 RepID=A0A7K2LVQ9_9ACTN)

HSP 1 Score: 157 bits (397), Expect = 2.800e-45
Identity = 106/182 (58.24%), Postives = 121/182 (66.48%), Query Frame = 1
Query:   13 IAAGRLTARELVERSLAAAERAGE-LGAVVSLRAERALAEADERDRLDPSERGR----LHGIPITVKDVIDVAGLPTGAGSAAYLTHPAR-DAVAVARLRAAGAIVVGKVATHEFALGVTTPQARNPADPSRIPGGSSGGSGIAVATGFGLASLGTDTRASIRVPAALCGVVGVKPTYGAVP 540
            I AGRL+  ELV+  L   E+    LGA V++ AERA   A  RD  D + RG     LHGIP+ +KDVIDV GLPT A S     H AR D+   ARL AAGAI+VGK  THEFA G+TTPQ RN  D  RI GGSSGGS +AVA+G    +LGTDT  SIRVPAAL GVVG+KPTYG VP
Sbjct:   15 IRAGRLSPVELVDSVLERIEQVEPGLGAYVAITAERARRAA--RDAEDEAARGLWRGPLHGIPMALKDVIDVGGLPTTASSRVRAHHRARTDSTVAARLAAAGAILVGKTHTHEFAYGLTTPQTRNARDRDRIAGGSSGGSAVAVASGAATFALGTDTGGSIRVPAALNGVVGLKPTYGLVP 194          
BLAST of mRNA_P-wetherbeei_contig52383.1.1 vs. uniprot
Match: UPI0019C16E47 (amidase n=1 Tax=Streptomyces sulfonofaciens TaxID=68272 RepID=UPI0019C16E47)

HSP 1 Score: 161 bits (407), Expect = 1.660e-43
Identity = 104/184 (56.52%), Postives = 121/184 (65.76%), Query Frame = 1
Query:   19 AGRLTARELVERSLAAAERA-GELGAVVSLRAERALAEADERDR--LDPSERGRLHGIPITVKDVIDVAGLPTGAGSAAYLTHPA-RDAVAVARLRAAGAIVVGKVATHEFALGVTTPQ-----ARNPADPSRIPGGSSGGSGIAVATGFGLASLGTDTRASIRVPAALCGVVGVKPTYGAVPT 543
            AG LTA +L ERSL A  R  G LGA V++ AE A   A + D       +RG LHG+P+ VKDVIDVAGLP   GSA +  H A  DA  V RLRAAGA+VVGK  THEFA G T  +     +RNP DP+R+ GGSSGGS +AVA G    +LGTDT  S+R+PAALCGV G KP YG VPT
Sbjct:   53 AGGLTAADLTERSLEAIARLDGRLGAFVTVDAEGARRAARQADAELAAGRDRGPLHGVPVAVKDVIDVAGLPVTMGSAHFAGHVADTDAECVRRLRAAGAVVVGKTTTHEFAYGPTGDRTANGPSRNPVDPTRMSGGSSGGSAVAVAAGMVPLALGTDTGGSVRIPAALCGVSGFKPAYGTVPT 236          
BLAST of mRNA_P-wetherbeei_contig52383.1.1 vs. uniprot
Match: D6KCV5_9ACTN (Glutamyl-tRNA(Gln) amidotransferase, A subunit n=6 Tax=unclassified Streptomyces TaxID=2593676 RepID=D6KCV5_9ACTN)

HSP 1 Score: 158 bits (399), Expect = 6.240e-43
Identity = 106/182 (58.24%), Postives = 121/182 (66.48%), Query Frame = 1
Query:   13 IAAGRLTARELVERSLAAAERAGE-LGAVVSLRAERALAEADERDRLDPSERGR----LHGIPITVKDVIDVAGLPTGAGSAAYLTHPAR-DAVAVARLRAAGAIVVGKVATHEFALGVTTPQARNPADPSRIPGGSSGGSGIAVATGFGLASLGTDTRASIRVPAALCGVVGVKPTYGAVP 540
            I AGRL+  ELV+  L   E+    LGA V++ AERA   A  RD  D + RG     LHGIP+ +KDVIDV GLPT A S     H AR D+   ARL AAGAI+VGK  THEFA G+TTPQ RN  D  RI GGSSGGS +AVA+G    +LGTDT  SIRVPAAL GVVG+KPTYG VP
Sbjct:   15 IRAGRLSPVELVDSVLERVEQVEPGLGAYVTITAERARRAA--RDAQDEAARGLWRGPLHGIPMALKDVIDVGGLPTTASSRVRAHHRARTDSTVAARLAAAGAILVGKTHTHEFAYGLTTPQTRNARDRDRIAGGSSGGSAVAVASGAATFALGTDTGGSIRVPAALNGVVGLKPTYGLVP 194          
BLAST of mRNA_P-wetherbeei_contig52383.1.1 vs. uniprot
Match: A0A6N9ERP8_9ACTN (Amidase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N9ERP8_9ACTN)

HSP 1 Score: 157 bits (397), Expect = 1.120e-42
Identity = 98/176 (55.68%), Postives = 116/176 (65.91%), Query Frame = 1
Query:   22 GRLTARELVERSLAAAERAG-ELGAVVSLRAERALAEADERDRLDPSER--GRLHGIPITVKDVIDVAGLPTGAGSAAYLTHPA-RDAVAVARLRAAGAIVVGKVATHEFALGVTTPQARNPADPSRIPGGSSGGSGIAVATGFGLASLGTDTRASIRVPAALCGVVGVKPTYGAV 537
            GR T+R L E SLA AE    EL A V + A  AL  AD  D    + R  G L G+P+ VKD++D+AGLPT  GS A+   PA  DA +V RLRA GA++VGK ATHE A GV TP   NP DPSR+PGGSSGGSG AVA G     +G+DT  SIR+PA+LCG VG+K TYG V
Sbjct:   14 GRTTSRALTEASLATAEALNPELSAFVVIDAVGALEAADAADEAIAAGRDLGPLMGVPVGVKDIVDMAGLPTRCGSPAFDATPAGSDATSVRRLRAGGAVIVGKTATHELACGVYTPPVSNPWDPSRVPGGSSGGSGAAVAAGIVPMGIGSDTGGSIRIPASLCGTVGLKATYGRV 189          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52383.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001D10E2F49.090e-6167.60amidase n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884... [more]
UPI001EEEAC645.950e-5868.79amidase n=1 Tax=Solirubrobacter sp. CPCC 204708 Ta... [more]
UPI00041E38914.120e-5465.34amidase n=1 Tax=Solirubrobacter soli TaxID=363832 ... [more]
A0A660LC85_9ACTN9.790e-5367.32Aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransfe... [more]
A0A2W1AV24_9CHLR1.040e-5261.14Aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransfe... [more]
A0A0M8VAF8_9ACTN1.060e-4557.84Amidase domain-containing protein n=17 Tax=Strepto... [more]
A0A7K2LVQ9_9ACTN2.800e-4558.24Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCA... [more]
UPI0019C16E471.660e-4356.52amidase n=1 Tax=Streptomyces sulfonofaciens TaxID=... [more]
D6KCV5_9ACTN6.240e-4358.24Glutamyl-tRNA(Gln) amidotransferase, A subunit n=6... [more]
A0A6N9ERP8_9ACTN1.120e-4255.68Amidase n=1 Tax=Acidimicrobiaceae bacterium TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52383contigP-wetherbeei_contig52383:2..544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog645465.ACUR01000553_gene668
PFAMsAmidase
Model size543
Max annot lvl201174|Actinobacteria
KEGG rclassRC00010
KEGG koko:K02433
KEGG ReactionR03905,R04212
KEGG Pathwayko00970,ko01100,map00970,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.02e-43
EggNOG OGsCOG0154@1|root,COG0154@2|Bacteria,2GN7F@201174|Actinobacteria
EC6.3.5.6,6.3.5.7
DescriptionBelongs to the amidase family
Cds size543
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186784.8933473-CDS-P-wetherbeei_contig52383:1..5441683186784.8933473-CDS-P-wetherbeei_contig52383:1..544Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52383 2..544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52383.1.1prot_P-wetherbeei_contig52383.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52383 2..544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52383.1.1

>prot_P-wetherbeei_contig52383.1.1 ID=prot_P-wetherbeei_contig52383.1.1|Name=mRNA_P-wetherbeei_contig52383.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
ARTEIAAGRLTARELVERSLAAAERAGELGAVVSLRAERALAEADERDRL
DPSERGRLHGIPITVKDVIDVAGLPTGAGSAAYLTHPARDAVAVARLRAA
GAIVVGKVATHEFALGVTTPQARNPADPSRIPGGSSGGSGIAVATGFGLA
SLGTDTRASIRVPAALCGVVGVKPTYGAVPT
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mRNA from alignment at P-wetherbeei_contig52383:2..544-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52383.1.1 ID=mRNA_P-wetherbeei_contig52383.1.1|Name=mRNA_P-wetherbeei_contig52383.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig52383:2..544- (Phaeothamnion wetherbeei SAG_119_79)
GCACGGACCGAGATCGCCGCCGGCCGACTCACGGCCCGGGAACTGGTGGA GCGCTCGCTGGCCGCCGCAGAGCGGGCCGGTGAGCTGGGAGCCGTGGTGA GCCTCCGCGCCGAGCGGGCGCTGGCCGAGGCCGACGAGCGCGACCGCCTG GACCCCTCTGAGCGCGGCCGGCTGCACGGCATCCCGATCACGGTGAAGGA CGTCATCGACGTGGCGGGCCTTCCCACCGGCGCCGGGTCGGCCGCGTACC TCACCCACCCGGCCCGTGACGCGGTTGCCGTGGCGCGCCTGCGGGCTGCC GGAGCCATCGTGGTGGGCAAGGTGGCCACCCACGAGTTCGCCCTCGGCGT CACCACCCCCCAGGCCCGTAACCCGGCCGACCCCTCGCGCATCCCCGGTG GCTCCAGCGGCGGTTCGGGGATCGCGGTGGCCACCGGCTTCGGCCTCGCC TCGCTCGGCACCGACACGCGCGCGTCGATCCGCGTGCCGGCGGCCCTCTG CGGCGTGGTCGGCGTGAAGCCGACCTACGGCGCCGTGCCCACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52383:2..544-

>mRNA_P-wetherbeei_contig52383.1.1 ID=mRNA_P-wetherbeei_contig52383.1.1|Name=mRNA_P-wetherbeei_contig52383.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig52383:2..544- (Phaeothamnion wetherbeei SAG_119_79)
GCACGGACCGAGATCGCCGCCGGCCGACTCACGGCCCGGGAACTGGTGGA
GCGCTCGCTGGCCGCCGCAGAGCGGGCCGGTGAGCTGGGAGCCGTGGTGA
GCCTCCGCGCCGAGCGGGCGCTGGCCGAGGCCGACGAGCGCGACCGCCTG
GACCCCTCTGAGCGCGGCCGGCTGCACGGCATCCCGATCACGGTGAAGGA
CGTCATCGACGTGGCGGGCCTTCCCACCGGCGCCGGGTCGGCCGCGTACC
TCACCCACCCGGCCCGTGACGCGGTTGCCGTGGCGCGCCTGCGGGCTGCC
GGAGCCATCGTGGTGGGCAAGGTGGCCACCCACGAGTTCGCCCTCGGCGT
CACCACCCCCCAGGCCCGTAACCCGGCCGACCCCTCGCGCATCCCCGGTG
GCTCCAGCGGCGGTTCGGGGATCGCGGTGGCCACCGGCTTCGGCCTCGCC
TCGCTCGGCACCGACACGCGCGCGTCGATCCGCGTGCCGGCGGCCCTCTG
CGGCGTGGTCGGCGTGAAGCCGACCTACGGCGCCGTGCCCACC
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