mRNA_P-wetherbeei_contig52368.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52368.1.1
Unique NamemRNA_P-wetherbeei_contig52368.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52368.1.1 vs. uniprot
Match: UPI0019946F26 (Uncharacterized protein n=1 Tax=Undibacterium sp. TaxID=1914977 RepID=UPI0019946F26)

HSP 1 Score: 100 bits (250), Expect = 2.440e-26
Identity = 55/77 (71.43%), Postives = 66/77 (85.71%), Query Frame = 1
Query:    1 TDESFNDYKKAERKALEILREMKAVSAKKTDIELALLVAVFELHKATLPAATIAAIVQGHIKQLLPHYA--ATPPVS 225
            TDE+FNDYK+AERKALEIL EMKA S K+ DIELALLVA+FELHK  +PA  IAAIVQGH+KQL+P+YA  A+P ++
Sbjct:    5 TDENFNDYKRAERKALEILAEMKATSPKQVDIELALLVAIFELHKGAVPADKIAAIVQGHLKQLVPYYAGKASPTIN 81          
BLAST of mRNA_P-wetherbeei_contig52368.1.1 vs. uniprot
Match: A0A2G4HKN9_9BACT (Uncharacterized protein n=2 Tax=unclassified Opitutae TaxID=503183 RepID=A0A2G4HKN9_9BACT)

HSP 1 Score: 96.3 bits (238), Expect = 1.600e-24
Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    4 DESFNDYKKAERKALEILREMKAVSAKKTDIELALLVAVFELHKATLPAATIAAIVQGHIKQLLPHYAATPPVSG 228
            +E+FNDYK+AERKALE+L  MKA + KK DIELALLVA+FELHK ++PA  IAAIVQGH+KQ++P Y    PV+G
Sbjct:    6 EENFNDYKRAERKALELLAAMKAATPKKVDIELALLVAIFELHKGSVPADKIAAIVQGHLKQMVPFYGEKHPVAG 80          
BLAST of mRNA_P-wetherbeei_contig52368.1.1 vs. uniprot
Match: A0A290QJZ2_9BACT (Uncharacterized protein n=2 Tax=Nibricoccus aquaticus TaxID=2576891 RepID=A0A290QJZ2_9BACT)

HSP 1 Score: 94.0 bits (232), Expect = 1.690e-23
Identity = 46/69 (66.67%), Postives = 61/69 (88.41%), Query Frame = 1
Query:    1 TDESFNDYKKAERKALEILREMKAVSAKKTDIELALLVAVFELHKATLPAATIAAIVQGHIKQLLPHYA 207
            T+++F DYK+AE+KALE+L EMKA + KK DIELALLVA+FELHK T+PAAT+A+I+ GH+KQ++P YA
Sbjct:   14 TEQNFQDYKRAEKKALELLAEMKAATPKKVDIELALLVAIFELHKGTVPAATVASIINGHLKQVVPFYA 82          
BLAST of mRNA_P-wetherbeei_contig52368.1.1 vs. uniprot
Match: A0A3E1EG73_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A3E1EG73_9BACT)

HSP 1 Score: 93.2 bits (230), Expect = 2.800e-23
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    1 TDESFNDYKKAERKALEILREMKAVSAKKTDIELALLVAVFELHKATLPAATIAAIVQGHIKQLLPHYAATPPVSG 228
            +D++F DYK AE+KALE+L  M+AVS KKTDIELALLVA+FELHK  LPA TI AIVQGH+K LLP YA     +G
Sbjct:    5 SDQNFQDYKNAEKKALELLVAMQAVSPKKTDIELALLVAIFELHKGLLPAETIGAIVQGHLKTLLPFYAVKKAPAG 80          
BLAST of mRNA_P-wetherbeei_contig52368.1.1 vs. uniprot
Match: A0A139SNC6_9BACT (Uncharacterized protein n=1 Tax=Cephaloticoccus capnophilus TaxID=1548208 RepID=A0A139SNC6_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 4.540e-23
Identity = 45/70 (64.29%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    1 TDESFNDYKKAERKALEILREMKAVSAKKTDIELALLVAVFELHKATLPAATIAAIVQGHIKQLLPHYAA 210
            T+E+F DYK+ E+KALE+L EM+A + +  DIELALLVA+FELHK TLPA TI +I+QGH+KQ++P+YAA
Sbjct:    4 TEENFKDYKRVEKKALELLAEMRATNGQTVDIELALLVAIFELHKGTLPAQTIGSIIQGHLKQIIPYYAA 73          
BLAST of mRNA_P-wetherbeei_contig52368.1.1 vs. uniprot
Match: UPI00199CFE5C (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI00199CFE5C)

HSP 1 Score: 92.4 bits (228), Expect = 5.350e-23
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    1 TDESFNDYKKAERKALEILREMKAVSAKKTDIELALLVAVFELHKATLPAATIAAIVQGHIKQLLPHY--AATP 216
            TD++F DYK AE+KAL IL EMKA S KK DIELALLVA+FELHK TLPAATIA IVQGH+K L P Y  AA P
Sbjct:    5 TDQNFLDYKNAEKKALVILSEMKATSPKKVDIELALLVAIFELHKGTLPAATIANIVQGHLKTLQPFYGGAAAP 78          
BLAST of mRNA_P-wetherbeei_contig52368.1.1 vs. uniprot
Match: A0A2E4J3L5_9BACT (Uncharacterized protein n=1 Tax=Opitutaceae bacterium TaxID=2006848 RepID=A0A2E4J3L5_9BACT)

HSP 1 Score: 93.2 bits (230), Expect = 5.610e-23
Identity = 49/76 (64.47%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    1 TDESFNDYKKAERKALEILREMKAVSAKKTDIELALLVAVFELHKATLPAATIAAIVQGHIKQLLPHYAATPPVSG 228
            T+E+F DYKKAE+KAL I+ EMK+ SAKK DIELALLVA+FELHK TLP  TI  IVQGH+KQ++P Y      +G
Sbjct:   32 TEENFQDYKKAEKKALAIVAEMKSASAKKNDIELALLVAIFELHKGTLPPETIGGIVQGHLKQIIPFYGPQAQPTG 107          
BLAST of mRNA_P-wetherbeei_contig52368.1.1 vs. uniprot
Match: A0A556QNK2_9BACT (Uncharacterized protein n=1 Tax=Rariglobus hedericola TaxID=2597822 RepID=A0A556QNK2_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 2.240e-22
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 1
Query:    4 DESFNDYKKAERKALEILREMKAVSAKKTDIELALLVAVFELHKATLPAATIAAIVQGHIKQLLPHYAA 210
            D++F +YKKAE++ALEI+  MK  S  K DIELALLVAVFELHK T PAATIA+I+QGH+KQ++PHYA+
Sbjct:    7 DQNFVNYKKAEKQALEIVATMKTASTNKVDIELALLVAVFELHKDTAPAATIASIIQGHLKQIVPHYAS 75          
BLAST of mRNA_P-wetherbeei_contig52368.1.1 vs. uniprot
Match: A0A7X1E781_9BACT (Uncharacterized protein n=1 Tax=Pelagicoccus albus TaxID=415222 RepID=A0A7X1E781_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 3.010e-22
Identity = 46/72 (63.89%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 TDESFNDYKKAERKALEILREMKAVSAKKTDIELALLVAVFELHKATLPAATIAAIVQGHIKQLLPHYAATP 216
            ++++F DYKKAE+KA+E+L EMKAVS KK DIEL+LLVA+FELHK  LPAA IA I+QGH+ +L+P Y+  P
Sbjct:    5 SEKNFQDYKKAEKKAMELLAEMKAVSPKKNDIELSLLVAIFELHKRELPAANIAKIIQGHLNELVPFYSRGP 76          
BLAST of mRNA_P-wetherbeei_contig52368.1.1 vs. uniprot
Match: A0A6B2M4I3_9BACT (Uncharacterized protein n=1 Tax=Oceanipulchritudo coccoides TaxID=2706888 RepID=A0A6B2M4I3_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 1.330e-21
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    4 DESFNDYKKAERKALEILREMKAVSAKKTDIELALLVAVFELHKATLPAATIAAIVQGHIKQLLPHYAATP-PVSGN 231
            +++F DYKKAE KA+E+L EMKAVS KK DIELAL+ AVFELHK  LPAAT+  IVQGH++ L+P Y   P P S N
Sbjct:    6 EQNFEDYKKAEAKAMELLAEMKAVSPKKVDIELALITAVFELHKGLLPAATVGKIVQGHLETLVPFYEQQPSPPSDN 82          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52368.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
UPI0019946F262.440e-2671.43Uncharacterized protein n=1 Tax=Undibacterium sp. ... [more]
A0A2G4HKN9_9BACT1.600e-2466.67Uncharacterized protein n=2 Tax=unclassified Opitu... [more]
A0A290QJZ2_9BACT1.690e-2366.67Uncharacterized protein n=2 Tax=Nibricoccus aquati... [more]
A0A3E1EG73_9BACT2.800e-2367.11Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A139SNC6_9BACT4.540e-2364.29Uncharacterized protein n=1 Tax=Cephaloticoccus ca... [more]
UPI00199CFE5C5.350e-2372.97Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A2E4J3L5_9BACT5.610e-2364.47Uncharacterized protein n=1 Tax=Opitutaceae bacter... [more]
A0A556QNK2_9BACT2.240e-2268.12Uncharacterized protein n=1 Tax=Rariglobus hederic... [more]
A0A7X1E781_9BACT3.010e-2263.89Uncharacterized protein n=1 Tax=Pelagicoccus albus... [more]
A0A6B2M4I3_9BACT1.330e-2163.64Uncharacterized protein n=1 Tax=Oceanipulchritudo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52368contigP-wetherbeei_contig52368:311..544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size234
Hectar predicted targeting categoryother localisation
Exons1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186784.6836023-CDS-P-wetherbeei_contig52368:310..5441683186784.6836023-CDS-P-wetherbeei_contig52368:310..544Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52368 311..544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52368.1.1prot_P-wetherbeei_contig52368.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52368 311..544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52368.1.1

>prot_P-wetherbeei_contig52368.1.1 ID=prot_P-wetherbeei_contig52368.1.1|Name=mRNA_P-wetherbeei_contig52368.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
TDESFNDYKKAERKALEILREMKAVSAKKTDIELALLVAVFELHKATLPA
ATIAAIVQGHIKQLLPHYAATPPVSGN*
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mRNA from alignment at P-wetherbeei_contig52368:311..544-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52368.1.1 ID=mRNA_P-wetherbeei_contig52368.1.1|Name=mRNA_P-wetherbeei_contig52368.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig52368:311..544- (Phaeothamnion wetherbeei SAG_119_79)
ACTGACGAGAGTTTCAACGACTACAAAAAGGCCGAGCGCAAGGCGCTGGA AATCCTGCGCGAGATGAAGGCCGTGAGCGCGAAGAAGACGGATATCGAGC TCGCGCTGCTCGTGGCCGTTTTCGAGCTGCACAAGGCCACGCTGCCCGCG GCGACCATCGCCGCCATCGTGCAGGGACACATCAAGCAGTTGCTGCCGCA TTACGCGGCGACACCGCCGGTGTCGGGGAATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52368:311..544-

>mRNA_P-wetherbeei_contig52368.1.1 ID=mRNA_P-wetherbeei_contig52368.1.1|Name=mRNA_P-wetherbeei_contig52368.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig52368:311..544- (Phaeothamnion wetherbeei SAG_119_79)
ACTGACGAGAGTTTCAACGACTACAAAAAGGCCGAGCGCAAGGCGCTGGA
AATCCTGCGCGAGATGAAGGCCGTGAGCGCGAAGAAGACGGATATCGAGC
TCGCGCTGCTCGTGGCCGTTTTCGAGCTGCACAAGGCCACGCTGCCCGCG
GCGACCATCGCCGCCATCGTGCAGGGACACATCAAGCAGTTGCTGCCGCA
TTACGCGGCGACACCGCCGGTGTCGGGGAATTGA
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