mRNA_P-wetherbeei_contig52337.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52337.1.1
Unique NamemRNA_P-wetherbeei_contig52337.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52337.1.1 vs. uniprot
Match: UPI0019B91F7B (DUF4390 domain-containing protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019B91F7B)

HSP 1 Score: 259 bits (663), Expect = 1.930e-86
Identity = 123/148 (83.11%), Postives = 133/148 (89.86%), Query Frame = 1
Query:    1 DYYLEANFDVELTHTLEGALNKGLPLHFLIEFELIRPRWYTLYMWNGSVLEFEQHYKLSYNALTRQYRLSVGALHQNLDTLSDALALMGRLRPRLLAPADTLNEGKVYEAAIRMRLDVSQLPKPLQINALASRDWNLASAWFRWTFMR 444
            DYYL+ANF+VELTHTLE ALNKGLPLHF++E ELIRPRWYTLY+WN  VLEFEQ Y+LSYNALTRQYRLS+GA HQN DTL+DALA+MGRLRPR LA AD L+ GKVYEAAIRMRLDVSQLPKP QINALASRDWNLAS WFRWT  R
Sbjct:   48 DYYLDANFEVELTHTLEDALNKGLPLHFVVELELIRPRWYTLYLWNKPVLEFEQQYRLSYNALTRQYRLSLGAFHQNFDTLNDALAVMGRLRPRFLADADLLDRGKVYEAAIRMRLDVSQLPKPFQINALASRDWNLASEWFRWTLTR 195          
BLAST of mRNA_P-wetherbeei_contig52337.1.1 vs. uniprot
Match: A0A7C3NNY4_9PROT (DUF4390 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3NNY4_9PROT)

HSP 1 Score: 178 bits (452), Expect = 2.240e-54
Identity = 82/144 (56.94%), Postives = 111/144 (77.08%), Query Frame = 1
Query:    4 YYLEANFDVELTHTLEGALNKGLPLHFLIEFELIRPRWYTLYMWNGSVLEFEQHYKLSYNALTRQYRLSVGALHQNLDTLSDALALMGRLRPRLLAPADTLNEGKVYEAAIRMRLDVSQLPKPLQINALASRDWNLASAWFRWT 435
            Y+LEA+F++ LTHTLE ALNKG+PL+F +EFELIRPRWY     N  + + +QHY+LS+NALTRQYR+ VG L+QN D+L +AL  + R+R R +A    L++G  Y AA+R+RLD SQLP+P QI+A+ SR+W++AS W RWT
Sbjct:   50 YFLEADFEITLTHTLEEALNKGVPLYFALEFELIRPRWYWF---NEKLADAQQHYRLSFNALTRQYRVGVGTLYQNFDSLREALGFLSRVRLREIAEPGALSKGTAYTAAVRLRLDASQLPRPFQISAVGSREWSVASDWHRWT 190          
BLAST of mRNA_P-wetherbeei_contig52337.1.1 vs. uniprot
Match: A0A1F4BFF2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BFF2_9PROT)

HSP 1 Score: 171 bits (434), Expect = 1.210e-51
Identity = 82/144 (56.94%), Postives = 105/144 (72.92%), Query Frame = 1
Query:    4 YYLEANFDVELTHTLEGALNKGLPLHFLIEFELIRPRWYTLYMWNGSVLEFEQHYKLSYNALTRQYRLSVGALHQNLDTLSDALALMGRLRPRLLAPADTLNEGKVYEAAIRMRLDVSQLPKPLQINALASRDWNLASAWFRWT 435
            Y+LEA FD+ LTHTLE ALNKG+PL+F +EFELIRPRWY L   N  +    Q Y+LSYNALTR YR+ VG L+QN  TLS+AL+ + ++R R  A    L +G  Y AA+R+RLD SQLP+P QI+A+ SR+W ++S W RWT
Sbjct:   50 YFLEAEFDIALTHTLEEALNKGVPLYFTLEFELIRPRWYWL---NEKLANARQQYRLSYNALTRHYRVGVGRLYQNFGTLSEALSFLSQVRLRDFAEPGALGKGASYTAALRLRLDTSQLPRPFQISAVGSREWTISSDWHRWT 190          
BLAST of mRNA_P-wetherbeei_contig52337.1.1 vs. uniprot
Match: A0A0S8D2X2_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Betaproteobacteria bacterium SG8_40 TaxID=1703389 RepID=A0A0S8D2X2_9PROT)

HSP 1 Score: 168 bits (425), Expect = 6.060e-51
Identity = 78/143 (54.55%), Postives = 106/143 (74.13%), Query Frame = 1
Query:   16 ANFDVELTHTLEGALNKGLPLHFLIEFELIRPRWYTLYMWNGSVLEFEQHYKLSYNALTRQYRLSVGALHQNLDTLSDALALMGRLRPRLLAPADTLNEGKVYEAAIRMRLDVSQLPKPLQINALASRDWNLASAWFRWTFMR 444
            A+F + LT T + AL++G+ LHF++EF LI PRWYTLY WN  ++E +Q Y+LS+NALTRQY LS G L Q   TL +AL+++G L  + L     L+E +VYEA +RMRLD ++LPKPLQI+AL S DW+++S+WFRWT  R
Sbjct:    2 ASFSIGLTPTAQEALDRGVALHFIVEFALIYPRWYTLYFWNKRLVELQQTYRLSFNALTRQYTLSYGVLQQTFYTLENALSVLGSLSDQPLFEESLLDEDRVYEAQLRMRLDTARLPKPLQIDALGSDDWDVSSSWFRWTIQR 144          
BLAST of mRNA_P-wetherbeei_contig52337.1.1 vs. uniprot
Match: A0A1F4DP97_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DP97_9PROT)

HSP 1 Score: 166 bits (421), Expect = 2.970e-50
Identity = 79/144 (54.86%), Postives = 105/144 (72.92%), Query Frame = 1
Query:    4 YYLEANFDVELTHTLEGALNKGLPLHFLIEFELIRPRWYTLYMWNGSVLEFEQHYKLSYNALTRQYRLSVGALHQNLDTLSDALALMGRLRPRLLAPADTLNEGKVYEAAIRMRLDVSQLPKPLQINALASRDWNLASAWFRWT 435
            Y LEA+F + LT TLE  LN+G+ L+F++EFELIRPRWY     N  ++E +Q Y+LSYNALTRQYR+ VG+L+QN   L+DALA M R+R         L +   Y AA+R+RLDVSQ+PKP Q++AL SR+WN++S W+RWT
Sbjct:    7 YVLEADFAIALTPTLEETLNRGVSLYFVLEFELIRPRWYWF---NDKIVEAQQQYRLSYNALTRQYRIGVGSLYQNFGALADALAFMSRVRRHEEIEPGALTKDTAYTAALRLRLDVSQMPKPFQLSALGSREWNVSSDWYRWT 147          
BLAST of mRNA_P-wetherbeei_contig52337.1.1 vs. uniprot
Match: A0A1F4E278_9PROT (Uncharacterized protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4E278_9PROT)

HSP 1 Score: 165 bits (418), Expect = 1.540e-49
Identity = 79/144 (54.86%), Postives = 103/144 (71.53%), Query Frame = 1
Query:    4 YYLEANFDVELTHTLEGALNKGLPLHFLIEFELIRPRWYTLYMWNGSVLEFEQHYKLSYNALTRQYRLSVGALHQNLDTLSDALALMGRLRPRLLAPADTLNEGKVYEAAIRMRLDVSQLPKPLQINALASRDWNLASAWFRWT 435
            Y LEANF++ LT TLE  LNKG+ L+FL+EFEL+RPRWY     +  ++  +Q Y+LSY+ALTRQYR+ VG L+QN   L+DAL +M RLR R      TL +   Y AA+R+RLD SQLPKP Q++ L SR+WN+ S W+RWT
Sbjct:   26 YVLEANFEIALTPTLEDVLNKGVSLYFLLEFELLRPRWYWF---SDKIVTTQQQYRLSYHALTRQYRIGVGNLYQNFGALADALEVMSRLRRREEIEPGTLRKDTTYTAALRLRLDTSQLPKPFQLSTLGSREWNVGSDWYRWT 166          
BLAST of mRNA_P-wetherbeei_contig52337.1.1 vs. uniprot
Match: A0A2E1TJA0_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2E1TJA0_9PROT)

HSP 1 Score: 165 bits (418), Expect = 2.940e-49
Identity = 79/149 (53.02%), Postives = 106/149 (71.14%), Query Frame = 1
Query:    1 DYYLEANFDVELTHTLEGALNKGLPLHFLIEFELIRPRWYTLYMWNGSVLEFEQHYKLSYNALTRQYRLSVGALHQNLDTLSDALALMGRL-RPRLLAPADTLNEGKVYEAAIRMRLDVSQLPKPLQINALASRDWNLASAWFRWTFMR 444
            DYYL A+  + L+  LE AL KG+ LHF+++FEL   RWYT Y+WN +++ + Q Y LS+NALTR YRL+ G LHQ+ D L DALA++G++ RPR++     L EGK Y A +RMRLD ++LPKP QINA+ S DWNL S WF W  ++
Sbjct:   43 DYYLSASLTINLSGILEEALQKGVALHFVLDFELGSKRWYTFYLWNTNLVRYSQSYGLSFNALTRNYRLTYGGLHQSFDNLQDALAVLGKVGRPRVIGHYH-LKEGKRYIARLRMRLDKTRLPKPFQINAIGSSDWNLDSNWFSWNVVK 190          
BLAST of mRNA_P-wetherbeei_contig52337.1.1 vs. uniprot
Match: A0A1F4ADH0_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4ADH0_9PROT)

HSP 1 Score: 163 bits (413), Expect = 8.830e-49
Identity = 78/142 (54.93%), Postives = 101/142 (71.13%), Query Frame = 1
Query:   10 LEANFDVELTHTLEGALNKGLPLHFLIEFELIRPRWYTLYMWNGSVLEFEQHYKLSYNALTRQYRLSVGALHQNLDTLSDALALMGRLRPRLLAPADTLNEGKVYEAAIRMRLDVSQLPKPLQINALASRDWNLASAWFRWT 435
            LEA+F++ L  TLEG L+KGLPL+FL+EFEL+RPRWY +   N  +    Q ++LSYNALTRQYR+ VG L+QN  TL++AL LM ++R R       L +   Y AA+RMRLD +QLPKP Q+N   SRDWN+ S W+RWT
Sbjct:   28 LEADFEIALNPTLEGVLSKGLPLYFLLEFELMRPRWYWV---NEKIAASRQQFRLSYNALTRQYRIGVGNLYQNFATLAEALDLMSQVRRREDVEPGALTKDTTYAAAVRMRLDTTQLPKPFQLNTFGSRDWNVGSEWYRWT 166          
BLAST of mRNA_P-wetherbeei_contig52337.1.1 vs. uniprot
Match: A0A3N5WK05_9PROT (DUF4390 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5WK05_9PROT)

HSP 1 Score: 164 bits (414), Expect = 1.430e-48
Identity = 78/144 (54.17%), Postives = 104/144 (72.22%), Query Frame = 1
Query:    4 YYLEANFDVELTHTLEGALNKGLPLHFLIEFELIRPRWYTLYMWNGSVLEFEQHYKLSYNALTRQYRLSVGALHQNLDTLSDALALMGRLRPRLLAPADTLNEGKVYEAAIRMRLDVSQLPKPLQINALASRDWNLASAWFRWT 435
            Y L+A+ D+ L+  LE ALNKG+PL+FL++FEL+R RWY     N  V+  EQ Y+LSYNALTRQYR+ +GA +QN  TL++AL +M ++R R      TL++G  Y A IR+RLD SQLPKP  +NAL SR+W+L S W+RWT
Sbjct:   53 YVLDADIDIVLSAPLEDALNKGIPLYFLLDFELVRSRWYWF---NDKVIAREQAYRLSYNALTRQYRIGIGAFYQNFPTLAEALQVMSKVRRREEIDPGTLSKGTNYTAGIRLRLDTSQLPKPFNLNALGSREWSLGSEWYRWT 193          
BLAST of mRNA_P-wetherbeei_contig52337.1.1 vs. uniprot
Match: A0A7C2YUL3_9PROT (DUF4390 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2YUL3_9PROT)

HSP 1 Score: 162 bits (409), Expect = 7.230e-48
Identity = 78/144 (54.17%), Postives = 100/144 (69.44%), Query Frame = 1
Query:    4 YYLEANFDVELTHTLEGALNKGLPLHFLIEFELIRPRWYTLYMWNGSVLEFEQHYKLSYNALTRQYRLSVGALHQNLDTLSDALALMGRLRPRLLAPADTLNEGKVYEAAIRMRLDVSQLPKPLQINALASRDWNLASAWFRWT 435
            Y L+A+F + LT  LE  L+KG+ L+FL+EFELIRPRWY     N  + E +  Y+LSYNALTRQYR+  G+L+QN  TLS+AL +M R+R R      TL     Y AA+R+RLD SQLPKP  + AL SR+WN+AS W+RWT
Sbjct:   49 YVLDADFSISLTPPLEDVLSKGVALYFLLEFELIRPRWYWF---NEKIAESQHQYRLSYNALTRQYRVGTGSLYQNFPTLSEALEVMSRVRRRRELDPGTLRRDTTYIAAVRLRLDTSQLPKPFNLTALGSREWNIASDWYRWT 189          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52337.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019B91F7B1.930e-8683.11DUF4390 domain-containing protein n=1 Tax=Prolixib... [more]
A0A7C3NNY4_9PROT2.240e-5456.94DUF4390 domain-containing protein n=1 Tax=Betaprot... [more]
A0A1F4BFF2_9PROT1.210e-5156.94Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A0S8D2X2_9PROT6.060e-5154.55Uncharacterized protein (Fragment) n=1 Tax=Betapro... [more]
A0A1F4DP97_9PROT2.970e-5054.86Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4E278_9PROT1.540e-4954.86Uncharacterized protein n=2 Tax=unclassified Betap... [more]
A0A2E1TJA0_9PROT2.940e-4953.02Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A1F4ADH0_9PROT8.830e-4954.93Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A3N5WK05_9PROT1.430e-4854.17DUF4390 domain-containing protein n=1 Tax=Betaprot... [more]
A0A7C2YUL3_9PROT7.230e-4854.17DUF4390 domain-containing protein n=1 Tax=Betaprot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52337contigP-wetherbeei_contig52337:95..541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1000565.METUNv1_03067
PFAMsDUF4390
Model size447
Max annot lvl206389|Rhodocyclales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.01e-44
EggNOG OGs29CX4@1|root,2ZZV8@2|Bacteria,1RFY7@1224|Proteobacteria,2VR98@28216|Betaproteobacteria,2KWGK@206389|Rhodocyclales
DescriptionDomain of unknown function (DUF4390)
Cds size447
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186784.4559903-CDS-P-wetherbeei_contig52337:94..5411683186784.4559903-CDS-P-wetherbeei_contig52337:94..541Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52337 95..541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52337.1.1prot_P-wetherbeei_contig52337.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52337 95..541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52337.1.1

>prot_P-wetherbeei_contig52337.1.1 ID=prot_P-wetherbeei_contig52337.1.1|Name=mRNA_P-wetherbeei_contig52337.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
DYYLEANFDVELTHTLEGALNKGLPLHFLIEFELIRPRWYTLYMWNGSVL
EFEQHYKLSYNALTRQYRLSVGALHQNLDTLSDALALMGRLRPRLLAPAD
TLNEGKVYEAAIRMRLDVSQLPKPLQINALASRDWNLASAWFRWTFMR*
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mRNA from alignment at P-wetherbeei_contig52337:95..541-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52337.1.1 ID=mRNA_P-wetherbeei_contig52337.1.1|Name=mRNA_P-wetherbeei_contig52337.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig52337:95..541- (Phaeothamnion wetherbeei SAG_119_79)
GACTATTATCTCGAAGCAAATTTCGATGTTGAGCTTACGCATACCCTCGA GGGCGCGCTCAACAAGGGATTGCCACTTCATTTCCTGATCGAATTCGAGC TGATTCGGCCGCGCTGGTACACGCTGTACATGTGGAACGGTTCGGTGCTG GAGTTCGAGCAGCACTACAAGCTTTCCTATAACGCGTTGACGCGCCAATA TCGCCTTTCGGTGGGCGCGCTGCATCAGAACCTCGACACGCTGAGCGATG CGCTCGCGCTGATGGGTCGCCTGCGACCACGTCTGCTGGCGCCGGCGGAT ACGCTGAATGAAGGCAAAGTGTACGAGGCGGCAATTCGCATGCGCCTCGA CGTCTCACAACTGCCCAAACCGCTGCAGATCAACGCGCTGGCATCCCGCG ACTGGAATCTGGCTTCGGCCTGGTTCCGTTGGACATTCATGCGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52337:95..541-

>mRNA_P-wetherbeei_contig52337.1.1 ID=mRNA_P-wetherbeei_contig52337.1.1|Name=mRNA_P-wetherbeei_contig52337.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig52337:95..541- (Phaeothamnion wetherbeei SAG_119_79)
GACTATTATCTCGAAGCAAATTTCGATGTTGAGCTTACGCATACCCTCGA
GGGCGCGCTCAACAAGGGATTGCCACTTCATTTCCTGATCGAATTCGAGC
TGATTCGGCCGCGCTGGTACACGCTGTACATGTGGAACGGTTCGGTGCTG
GAGTTCGAGCAGCACTACAAGCTTTCCTATAACGCGTTGACGCGCCAATA
TCGCCTTTCGGTGGGCGCGCTGCATCAGAACCTCGACACGCTGAGCGATG
CGCTCGCGCTGATGGGTCGCCTGCGACCACGTCTGCTGGCGCCGGCGGAT
ACGCTGAATGAAGGCAAAGTGTACGAGGCGGCAATTCGCATGCGCCTCGA
CGTCTCACAACTGCCCAAACCGCTGCAGATCAACGCGCTGGCATCCCGCG
ACTGGAATCTGGCTTCGGCCTGGTTCCGTTGGACATTCATGCGATGA
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