mRNA_P-wetherbeei_contig52286.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52286.1.1
Unique NamemRNA_P-wetherbeei_contig52286.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52286.1.1 vs. uniprot
Match: A0A7Y3JKQ1_9PROT (Uncharacterized protein n=1 Tax=Gallionella sp. TaxID=2052161 RepID=A0A7Y3JKQ1_9PROT)

HSP 1 Score: 52.8 bits (125), Expect = 2.730e-7
Identity = 25/62 (40.32%), Postives = 37/62 (59.68%), Query Frame = 1
Query:   28 IEELHPRIIERLTGTWRTPELLQYLKRLIVDERGDRAGFSAAVMSELLMLSAVLEAPEEPDK 213
            +E  +PRI  ++   W  PE+  Y   L+VD+RGDRAGF+  V +E++ LS V  A    D+
Sbjct:   16 LESKYPRIFGKIMALWDAPEIDDYFMELVVDKRGDRAGFAPDVAAEIVHLSLVHAAQHAADR 77          
BLAST of mRNA_P-wetherbeei_contig52286.1.1 vs. uniprot
Match: A0A522XAX7_9PROT (Uncharacterized protein n=1 Tax=Gallionella sp. TaxID=2052161 RepID=A0A522XAX7_9PROT)

HSP 1 Score: 55.5 bits (132), Expect = 3.750e-7
Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   43 PRIIERLTGTWRTPELLQYLKRLIVDERGDRAGFSAAVMSELLMLSAVLEAPEEPDKWN 219
            PRI++++   W TP +  Y   L+VD+RGDRAGF   V S++  LS +L+   + DK N
Sbjct:   25 PRILDKVLALWDTPSIEAYFADLLVDDRGDRAGFPKEVASDIFYLSTLLQQRPDRDKKN 83          
BLAST of mRNA_P-wetherbeei_contig52286.1.1 vs. uniprot
Match: UPI001CFF55E0 (hypothetical protein n=1 Tax=Deefgea sp. H3-26 TaxID=2875502 RepID=UPI001CFF55E0)

HSP 1 Score: 50.8 bits (120), Expect = 2.320e-6
Identity = 22/51 (43.14%), Postives = 33/51 (64.71%), Query Frame = 1
Query:   34 ELHPRIIERLTGTWRTPELLQYLKRLIVDERGDRAGFSAAVMSELLMLSAV 186
            E +PRIIE++T  W +P+L  +L  L+ D RGDR GF+  V  EL ++  +
Sbjct:   24 EQYPRIIEKITLLWGSPQLAHFLNELLFDSRGDREGFTPQVAHELFVIQQI 74          
BLAST of mRNA_P-wetherbeei_contig52286.1.1 vs. uniprot
Match: A0A5C9BCM5_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A5C9BCM5_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 3.290e-6
Identity = 23/56 (41.07%), Postives = 34/56 (60.71%), Query Frame = 1
Query:   19 RADIEELHPRIIERLTGTWRTPELLQYLKRLIVDERGDRAGFSAAVMSELLMLSAV 186
            R+ +E   PRI   L   WR+P +  Y+  L++D RGDR GF A V+ E++ L+ V
Sbjct:   23 RSSLETRFPRIARELAARWRSPGIDFYIDSLLIDTRGDRMGFPADVLEEIMFLAGV 78          
BLAST of mRNA_P-wetherbeei_contig52286.1.1 vs. uniprot
Match: A0A7V8ZNL9_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7V8ZNL9_9BURK)

HSP 1 Score: 49.7 bits (117), Expect = 4.030e-6
Identity = 20/56 (35.71%), Postives = 35/56 (62.50%), Query Frame = 1
Query:   10 IEVRADIEELHPRIIERLTGTWRTPELLQYLKRLIVDERGDRAGFSAAVMSELLML 177
            +++ +++E+  P +   +T  W  PE + Y+ +LIVD+RG R GF   V+ E+L L
Sbjct:    1 MKILSEVEKRFPHVARNITLMWGCPEFIDYINKLIVDDRGGRQGFPTEVLDEMLFL 56          
BLAST of mRNA_P-wetherbeei_contig52286.1.1 vs. uniprot
Match: A0A7Y8M8S0_9PROT (Uncharacterized protein n=1 Tax=Hydrogenophilaceae bacterium TaxID=2723029 RepID=A0A7Y8M8S0_9PROT)

HSP 1 Score: 50.4 bits (119), Expect = 5.110e-6
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 1
Query:   28 IEELHPRIIERLTGTWRTPELLQYLKRLIVDERGDRAGFSAAVMSELLMLSAV 186
            +E+  PRI  +L   W++     YL  L++D+RGDR GF A VM ELLML  +
Sbjct:   24 LEQKFPRIAMKLVEVWQSDACRDYLHSLLMDDRGDRQGFPAEVMDELLMLDNI 76          
BLAST of mRNA_P-wetherbeei_contig52286.1.1 vs. uniprot
Match: K2CUH7_9BACT (Ankyrin n=1 Tax=uncultured bacterium TaxID=77133 RepID=K2CUH7_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 5.170e-6
Identity = 21/56 (37.50%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   25 DIEELHPRIIERLTGTWRTPELLQYLKRLIVDERGDRAGFSAAVMSELLMLSAVLE 192
            ++E+  PRI+E+LT  W    +  +L  L++D+RGDR GF+  +M+E++ L+ + E
Sbjct:    9 ELEKKFPRIVEKLTLLWGDEGVSPFLSHLLIDDRGDRQGFTGDIMAEIMFLNNLHE 64          
BLAST of mRNA_P-wetherbeei_contig52286.1.1 vs. uniprot
Match: A0A658BNJ5_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A658BNJ5_9PROT)

HSP 1 Score: 49.7 bits (117), Expect = 5.170e-6
Identity = 22/60 (36.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   22 ADIEELHPRIIERLTGTWRTPELLQYLKRLIVDERGDRAGFSAAVMSELLMLSAVLEAPE 201
            +++E+  PRI+E+LT  W    +  +L  L++D+RGDR GF+   M+E++ L+ + E  E
Sbjct:    8 SELEKNFPRIVEKLTMLWGHDGVAAFLSHLLIDDRGDRQGFTGETMAEIMFLNNLHEDME 67          
BLAST of mRNA_P-wetherbeei_contig52286.1.1 vs. uniprot
Match: A0A1F3WTG8_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RBG_16_56_24 TaxID=1797475 RepID=A0A1F3WTG8_9PROT)

HSP 1 Score: 51.6 bits (122), Expect = 8.990e-6
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   28 IEELHPRIIERLTGTWRTPELLQYLKRLIVDERGDRAGFSAAVMSELLMLSAVL---EAPEEPDKW 216
            +E+ +PR++ ++   W T  +      L+VD+RGDRAGF   V SE+  LS ++    APE+ D W
Sbjct:   20 LEKQYPRVLNKILELWDTGGIEACFSELMVDDRGDRAGFPPGVASEIFYLSTLVGQQAAPEKDDPW 85          
BLAST of mRNA_P-wetherbeei_contig52286.1.1 vs. uniprot
Match: A0A6M8SNN4_9NEIS (Uncharacterized protein n=1 Tax=Deefgea sp. D17 TaxID=2739061 RepID=A0A6M8SNN4_9NEIS)

HSP 1 Score: 49.3 bits (116), Expect = 9.660e-6
Identity = 22/51 (43.14%), Postives = 31/51 (60.78%), Query Frame = 1
Query:   34 ELHPRIIERLTGTWRTPELLQYLKRLIVDERGDRAGFSAAVMSELLMLSAV 186
            E HPRI+E+ T  W +PEL  +L  ++ D RGDR GF   V  EL ++  +
Sbjct:   24 EQHPRIMEKNTLLWGSPELANFLDEILFDSRGDREGFPPNVAHELFVIQGI 74          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52286.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A7Y3JKQ1_9PROT2.730e-740.32Uncharacterized protein n=1 Tax=Gallionella sp. Ta... [more]
A0A522XAX7_9PROT3.750e-742.37Uncharacterized protein n=1 Tax=Gallionella sp. Ta... [more]
UPI001CFF55E02.320e-643.14hypothetical protein n=1 Tax=Deefgea sp. H3-26 Tax... [more]
A0A5C9BCM5_9BACT3.290e-641.07Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A7V8ZNL9_9BURK4.030e-635.71Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A7Y8M8S0_9PROT5.110e-645.28Uncharacterized protein n=1 Tax=Hydrogenophilaceae... [more]
K2CUH7_9BACT5.170e-637.50Ankyrin n=1 Tax=uncultured bacterium TaxID=77133 R... [more]
A0A658BNJ5_9PROT5.170e-636.67Uncharacterized protein n=1 Tax=Nitrosomonadales b... [more]
A0A1F3WTG8_9PROT8.990e-637.88Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A6M8SNN4_9NEIS9.660e-643.14Uncharacterized protein n=1 Tax=Deefgea sp. D17 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52286contigP-wetherbeei_contig52286:109..348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1163617.SCD_n01048
Model size240
Max annot lvl28216|Betaproteobacteria
KEGG koko:K08086
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.06e-11
EggNOG OGsCOG3170@1|root,COG3170@2|Bacteria,1RE27@1224|Proteobacteria,2VRNH@28216|Betaproteobacteria
DescriptionTfp pilus assembly protein FimV
Cds size240
COG categoryNU
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186784.067337-CDS-P-wetherbeei_contig52286:108..3481683186784.067337-CDS-P-wetherbeei_contig52286:108..348Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52286 109..348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52286.1.1prot_P-wetherbeei_contig52286.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52286 109..348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52286.1.1

>prot_P-wetherbeei_contig52286.1.1 ID=prot_P-wetherbeei_contig52286.1.1|Name=mRNA_P-wetherbeei_contig52286.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
PEKIEVRADIEELHPRIIERLTGTWRTPELLQYLKRLIVDERGDRAGFSA
AVMSELLMLSAVLEAPEEPDKWNANARVV*
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mRNA from alignment at P-wetherbeei_contig52286:109..348-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52286.1.1 ID=mRNA_P-wetherbeei_contig52286.1.1|Name=mRNA_P-wetherbeei_contig52286.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig52286:109..348- (Phaeothamnion wetherbeei SAG_119_79)
CCGGAGAAGATCGAGGTGCGTGCCGACATTGAGGAATTGCATCCGCGCAT CATCGAGCGGCTCACCGGTACCTGGCGCACCCCGGAACTGCTGCAATACC TGAAGCGCCTGATCGTCGACGAACGCGGAGACCGTGCAGGGTTCTCCGCC GCGGTGATGAGCGAGCTGCTGATGCTCTCGGCGGTGCTCGAAGCGCCGGA AGAACCCGACAAATGGAACGCCAATGCCCGCGTGGTTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52286:109..348-

>mRNA_P-wetherbeei_contig52286.1.1 ID=mRNA_P-wetherbeei_contig52286.1.1|Name=mRNA_P-wetherbeei_contig52286.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig52286:109..348- (Phaeothamnion wetherbeei SAG_119_79)
CCGGAGAAGATCGAGGTGCGTGCCGACATTGAGGAATTGCATCCGCGCAT
CATCGAGCGGCTCACCGGTACCTGGCGCACCCCGGAACTGCTGCAATACC
TGAAGCGCCTGATCGTCGACGAACGCGGAGACCGTGCAGGGTTCTCCGCC
GCGGTGATGAGCGAGCTGCTGATGCTCTCGGCGGTGCTCGAAGCGCCGGA
AGAACCCGACAAATGGAACGCCAATGCCCGCGTGGTTTGA
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