mRNA_P-wetherbeei_contig52255.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52255.1.1
Unique NamemRNA_P-wetherbeei_contig52255.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52255.1.1 vs. uniprot
Match: A0A7C1MJD4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Omnitrophica bacterium TaxID=2035772 RepID=A0A7C1MJD4_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 5.150e-7
Identity = 33/85 (38.82%), Postives = 46/85 (54.12%), Query Frame = 1 
Query:    4 CSGSCKDATFNFPRLLWNPAWPDDEG--WESLDTHRGYYDLALTSFLIIAKEHMGDELQLW-DSEP-YWLDARELCQQHLGYGRE 246
            C G C   +F F R+        + G  ++   T    YDLA+ +FLIIAK H+G  +++  D E  +W D + LCQQ LGYG E
Sbjct:  106 CDGDCSYESFIFERIFNGKFLQKENGLYFDFCKTAFRPYDLAVITFLIIAKHHLGKGIKVSSDGEDCHWFDGKLLCQQFLGYGFE 190
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BLAST of mRNA_P-wetherbeei_contig52255.1.1 vs. uniprot
Match: A0A419DWU5_9BACT (Uncharacterized protein n=1 Tax=Candidatus Omnitrophica bacterium TaxID=2035772 RepID=A0A419DWU5_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 1.850e-6
Identity = 32/84 (38.10%), Postives = 47/84 (55.95%), Query Frame = 1 
Query:    4 CSGSCKDATFNFPRLLWNPAWPDDEGWESLD-THRGY--YDLALTSFLIIAKEHMGDELQLW-DSEP-YWLDARELCQQHLGYG 240
            C G C   TF F R+L    + + +     D T   +  YDLA+ +FLIIAK ++ D++++  D E  +W D + LCQ  LGYG
Sbjct:  107 CDGDCSYETFLFDRILNLSDYSEPKNGRYFDCTKTAFRPYDLAVITFLIIAKHYLKDKIKVVSDGEDCHWFDGKILCQMELGYG 190
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BLAST of mRNA_P-wetherbeei_contig52255.1.1 vs. uniprot
Match: A0A662T9H1_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Geothermarchaeota archaeon TaxID=2250273 RepID=A0A662T9H1_9ARCH)

HSP 1 Score: 52.4 bits (124), Expect = 6.330e-6
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:  112 YDLALTSFLIIAKEHMGDELQLWDSEPY--WLDARELCQQHLGYGRE 246
            YDLA+ SFLIIAK ++GDE+ +     Y  W+D   LCQ  LGYG E
Sbjct:  164 YDLAVISFLIIAKHYLGDEIIIHTDGEYQHWMDGFYLCQDQLGYGAE 210
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52255.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7C1MJD4_9BACT5.150e-738.82Uncharacterized protein n=1 Tax=Candidatus Omnitro... [more]
A0A419DWU5_9BACT1.850e-638.10Uncharacterized protein n=1 Tax=Candidatus Omnitro... [more]
A0A662T9H1_9ARCH6.330e-653.19Uncharacterized protein n=1 Tax=Candidatus Geother... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52255contigP-wetherbeei_contig52255:178..459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size282
Hectar predicted targeting categoryother localisation
Exons1
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186783.6144342-CDS-P-wetherbeei_contig52255:177..4591683186783.6144342-CDS-P-wetherbeei_contig52255:177..459Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52255 178..459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52255.1.1prot_P-wetherbeei_contig52255.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52255 178..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52255.1.1

>prot_P-wetherbeei_contig52255.1.1 ID=prot_P-wetherbeei_contig52255.1.1|Name=mRNA_P-wetherbeei_contig52255.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
SCSGSCKDATFNFPRLLWNPAWPDDEGWESLDTHRGYYDLALTSFLIIAK
EHMGDELQLWDSEPYWLDARELCQQHLGYGRELPLFASVQDELI
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mRNA from alignment at P-wetherbeei_contig52255:178..459-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52255.1.1 ID=mRNA_P-wetherbeei_contig52255.1.1|Name=mRNA_P-wetherbeei_contig52255.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig52255:178..459- (Phaeothamnion wetherbeei SAG_119_79)
AGCTGTTCAGGGAGTTGTAAGGACGCAACCTTCAATTTCCCTCGCTTGCT
CTGGAATCCGGCCTGGCCCGACGACGAGGGTTGGGAGAGTCTGGATACCC
ACCGTGGCTACTACGACCTGGCTCTGACCTCATTCCTCATCATCGCCAAA
GAGCACATGGGCGACGAGTTGCAACTGTGGGATTCCGAACCCTATTGGTT
GGATGCGCGGGAGCTCTGCCAGCAACATCTCGGCTACGGGCGGGAACTGC
CGCTTTTCGCCTCCGTGCAAGACGAGCTTATT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52255:178..459-

>mRNA_P-wetherbeei_contig52255.1.1 ID=mRNA_P-wetherbeei_contig52255.1.1|Name=mRNA_P-wetherbeei_contig52255.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig52255:178..459- (Phaeothamnion wetherbeei SAG_119_79)
AGCTGTTCAGGGAGTTGTAAGGACGCAACCTTCAATTTCCCTCGCTTGCT
CTGGAATCCGGCCTGGCCCGACGACGAGGGTTGGGAGAGTCTGGATACCC
ACCGTGGCTACTACGACCTGGCTCTGACCTCATTCCTCATCATCGCCAAA
GAGCACATGGGCGACGAGTTGCAACTGTGGGATTCCGAACCCTATTGGTT
GGATGCGCGGGAGCTCTGCCAGCAACATCTCGGCTACGGGCGGGAACTGC
CGCTTTTCGCCTCCGTGCAAGACGAGCTTATT
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