mRNA_P-wetherbeei_contig52236.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52236.1.1
Unique NamemRNA_P-wetherbeei_contig52236.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52236.1.1 vs. uniprot
Match: A0A5C7NKW5_9PROT (Aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NKW5_9PROT)

HSP 1 Score: 218 bits (555), Expect = 2.080e-67
Identity = 103/133 (77.44%), Postives = 117/133 (87.97%), Query Frame = 1
Query:   10 LDTAFVRGQFPPLADGWVFVENAGGTYVPRQVVDRTREYMSETQVQPNWGFASSMLATDRIARGKHLMAEFINADHDEIVLGASTTLHVYLMAQSLRRQFQPGDEIIVSEQDHEANVGAWRELAEFGRVIRDW 408
            LDTAFVR QF PLADGWVFVENAGGTYVPRQVVDR +EYMS+TQVQPNWGFASS  AT+RI  GK LMAEFINA+ DEIV G STT++VYL+AQ++R   +PGDE+IV+EQDHEANVGAWR LAEFG VI++W
Sbjct:    7 LDTAFVRAQFAPLADGWVFVENAGGTYVPRQVVDRVQEYMSQTQVQPNWGFASSERATERIRHGKQLMAEFINAEPDEIVFGPSTTMNVYLLAQAIRPWLKPGDEVIVTEQDHEANVGAWRRLAEFGLVIKEW 139          
BLAST of mRNA_P-wetherbeei_contig52236.1.1 vs. uniprot
Match: A0A5J6MLP4_9PROT (Cysteine desulfurase-like protein n=1 Tax=Hypericibacter terrae TaxID=2602015 RepID=A0A5J6MLP4_9PROT)

HSP 1 Score: 180 bits (456), Expect = 1.400e-52
Identity = 81/135 (60.00%), Postives = 106/135 (78.52%), Query Frame = 1
Query:    7 TLDTAFVRGQFPPLADGWVFVENAGGTYVPRQVVDRTREYMSETQVQPNWGFASSMLATDRIARGKHLMAEFINADHDEIVLGASTTLHVYLMAQSLRRQFQPGDEIIVSEQDHEANVGAWRELAEFGRVIRDWR 411
            +LD  FVR QFPPLA+GW+ +ENAGG+YVP+ V+DR   YMSE Q+QP+W F  S  A  RIA G+ LMAE INA+ +E+ +G ST+L+VYL+ QS+R  F+PGDE++V+ QDHEAN+GAWR LAE G VIR+W+
Sbjct:    5 SLDLDFVRRQFPPLANGWIMLENAGGSYVPQSVIDRVTSYMSEVQIQPSWDFGPSADAAARIATGRRLMAEMINAEPEEVSIGPSTSLNVYLLMQSIRSWFKPGDEVVVTNQDHEANIGAWRRLAEDGVVIREWQ 139          
BLAST of mRNA_P-wetherbeei_contig52236.1.1 vs. uniprot
Match: A0A5J6MX54_9PROT (Cysteine desulfurase-like protein n=1 Tax=Hypericibacter adhaerens TaxID=2602016 RepID=A0A5J6MX54_9PROT)

HSP 1 Score: 172 bits (435), Expect = 1.860e-49
Identity = 77/134 (57.46%), Postives = 102/134 (76.12%), Query Frame = 1
Query:   10 LDTAFVRGQFPPLADGWVFVENAGGTYVPRQVVDRTREYMSETQVQPNWGFASSMLATDRIARGKHLMAEFINADHDEIVLGASTTLHVYLMAQSLRRQFQPGDEIIVSEQDHEANVGAWRELAEFGRVIRDWR 411
            LD  FVR QFPPL +GW+ +ENAGG+YVP+ V+DR   YM E Q+QP+W F  S  A  RIA G+  MAE INA+ +E+ +G STTL+V+L+ Q++R  F+PGDE+IV+ QDHEAN+GAWR LA+ G VIR+W+
Sbjct:    6 LDLDFVRRQFPPLGNGWIMLENAGGSYVPQSVIDRVTAYMREVQIQPSWDFGPSADAAARIAAGRRQMAEMINAEPEEVSIGPSTTLNVFLLMQAIRHWFRPGDEVIVTNQDHEANIGAWRRLADDGVVIREWQ 139          
BLAST of mRNA_P-wetherbeei_contig52236.1.1 vs. uniprot
Match: A0A836TS05_9PROT (Aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Sneathiellales bacterium TaxID=2528251 RepID=A0A836TS05_9PROT)

HSP 1 Score: 171 bits (433), Expect = 4.780e-49
Identity = 81/133 (60.90%), Postives = 99/133 (74.44%), Query Frame = 1
Query:   10 LDTAFVRGQFPPLADGWVFVENAGGTYVPRQVVDRTREYMSETQVQPNWGFASSMLATDRIARGKHLMAEFINADHDEIVLGASTTLHVYLMAQSLRRQFQPGDEIIVSEQDHEANVGAWRELAEFGRVIRDW 408
            LD  FVR QFPPL +GW F ENAGG+YVPRQV+DR   YMSETQVQP   +  S  A +R+   + LMA+ INA  +EIV+G STTL+VY++A +LR  F  GDEI+V+ QDHEAN GAWR L+EFG VIR+W
Sbjct:   15 LDMEFVRAQFPPLDNGWAFFENAGGSYVPRQVIDRMTTYMSETQVQPGAAYGPSASAFERVDGARRLMADMINAREEEIVIGPSTTLNVYVLANALRPLFHEGDEIVVTNQDHEANGGAWRRLSEFGMVIREW 147          
BLAST of mRNA_P-wetherbeei_contig52236.1.1 vs. uniprot
Match: A0A418WGF5_9PROT (Aminotransferase class V-fold PLP-dependent enzyme n=2 Tax=Oleomonas cavernae TaxID=2320859 RepID=A0A418WGF5_9PROT)

HSP 1 Score: 162 bits (411), Expect = 6.780e-46
Identity = 77/133 (57.89%), Postives = 96/133 (72.18%), Query Frame = 1
Query:   10 LDTAFVRGQFPPLADGWVFVENAGGTYVPRQVVDRTREYMSETQVQPNWGFASSMLATDRIARGKHLMAEFINADHDEIVLGASTTLHVYLMAQSLRRQFQPGDEIIVSEQDHEANVGAWRELAEFGRVIRDW 408
            LD  F R QFPPL +G  F+ENAGGTYVPRQV+DR   YM+  QVQP WGFA+S  A   I  G+ L A F+NAD DE+++G STT++V ++AQ++R    PGDEI+V+ QDHEAN GAWR LA  G  IR+W
Sbjct:   12 LDVGFARSQFPPLDNGVAFLENAGGTYVPRQVIDRVTHYMTALQVQPAWGFAASAQAARLICEGQALAAAFLNADADEVLVGPSTTVNVLVLAQAMRPLLAPGDEIVVTNQDHEANSGAWRRLAGEGVAIREW 144          
BLAST of mRNA_P-wetherbeei_contig52236.1.1 vs. uniprot
Match: A0A523KH60_9GAMM (Cysteine desulfurase-like protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523KH60_9GAMM)

HSP 1 Score: 159 bits (402), Expect = 1.370e-44
Identity = 78/136 (57.35%), Postives = 95/136 (69.85%), Query Frame = 1
Query:    4 TTLDTAFVRGQFPPLADGWVFVENAGGTYVPRQVVDRTREYMSETQVQPNWGFASSMLATDRIARGKHLMAEFINADHDEIVLGASTTLHVYLMAQSLRRQFQPGDEIIVSEQDHEANVGAWRELAEFGRVIRDWR 411
            T LD  F R  FPPL+ G V+ ENAGG+Y PRQV+D    +M E Q QP W FASS  A +R+ R + LMAE INAD DEIV+G STTL+VY++A +L     PG EI+V+ QDHEAN GAWR LAE G  +R+WR
Sbjct:    4 TRLDVDFCRSFFPPLSSGEVYFENAGGSYAPRQVIDSLTAFMRECQCQPGWQFASSRSARERLERAQALMAEAINADCDEIVIGPSTTLNVYVLAHALAPLLAPGSEIVVTNQDHEANGGAWRRLAETGVKVREWR 139          
BLAST of mRNA_P-wetherbeei_contig52236.1.1 vs. uniprot
Match: A0A317EAT8_9PROT (Uncharacterized protein n=2 Tax=Zavarzinia compransoris TaxID=1264899 RepID=A0A317EAT8_9PROT)

HSP 1 Score: 157 bits (398), Expect = 6.670e-44
Identity = 75/133 (56.39%), Postives = 96/133 (72.18%), Query Frame = 1
Query:   10 LDTAFVRGQFPPLADGWVFVENAGGTYVPRQVVDRTREYMSETQVQPNWGFASSMLATDRIARGKHLMAEFINADHDEIVLGASTTLHVYLMAQSLRRQFQPGDEIIVSEQDHEANVGAWRELAEFGRVIRDW 408
            LD  F R QFPPLA+G  F+ENAGGTYVPRQV+DR   YM+E QVQP +GFA+S  A   IA G+ + A F+NA  DE+++G STT++V ++A +LR    PGDEI+V+ QDHEAN   WR LAE G  +R+W
Sbjct:   19 LDVGFARAQFPPLANGTAFLENAGGTYVPRQVIDRVTRYMTELQVQPAYGFAASAEAARLIAEGQAVAAAFLNAGTDEVLVGPSTTVNVMVLAAALRPLLAPGDEIVVTNQDHEANSTPWRRLAETGASVREW 151          
BLAST of mRNA_P-wetherbeei_contig52236.1.1 vs. uniprot
Match: A0A317EGC9_9PROT (Aminotran_5 domain-containing protein n=2 Tax=Zavarzinia aquatilis TaxID=2211142 RepID=A0A317EGC9_9PROT)

HSP 1 Score: 156 bits (395), Expect = 1.680e-43
Identity = 74/133 (55.64%), Postives = 95/133 (71.43%), Query Frame = 1
Query:   10 LDTAFVRGQFPPLADGWVFVENAGGTYVPRQVVDRTREYMSETQVQPNWGFASSMLATDRIARGKHLMAEFINADHDEIVLGASTTLHVYLMAQSLRRQFQPGDEIIVSEQDHEANVGAWRELAEFGRVIRDW 408
            LD AF R QFPP+ +G  F+ENAGGTYVPRQVV+R   YMS  QVQP WGF +S  A   I  G  + A F+NAD +++ +G STT++  ++AQ++R   QPGDEI+V+ QDHEAN G+WR LA  G VIR+W
Sbjct:   13 LDVAFARDQFPPMTNGTAFLENAGGTYVPRQVVERVTHYMSALQVQPAWGFTASAEAAGLIRDGVAVAAAFLNADPEDVFVGPSTTVNTLVLAQAVRPLLQPGDEIVVTNQDHEANSGSWRRLAGEGVVIREW 145          
BLAST of mRNA_P-wetherbeei_contig52236.1.1 vs. uniprot
Match: UPI001F3CFAF2 (aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Zavarzinia compransoris TaxID=1264899 RepID=UPI001F3CFAF2)

HSP 1 Score: 155 bits (391), Expect = 5.930e-43
Identity = 73/133 (54.89%), Postives = 95/133 (71.43%), Query Frame = 1
Query:   10 LDTAFVRGQFPPLADGWVFVENAGGTYVPRQVVDRTREYMSETQVQPNWGFASSMLATDRIARGKHLMAEFINADHDEIVLGASTTLHVYLMAQSLRRQFQPGDEIIVSEQDHEANVGAWRELAEFGRVIRDW 408
            LD  F R QFPP  +G  F+ENAGGTYVPRQV+DR   YMS  QVQP +GF +S+ ATD IA G  + A F+NA+ DE+++G STT++V ++AQ+ R    PGDEI+V+ QDHEAN   WR LA+ G  +R+W
Sbjct:   11 LDAGFARAQFPPAENGIAFLENAGGTYVPRQVIDRVGHYMSRVQVQPAYGFPASIEATDLIADGVAIAAAFLNAEPDEVLVGPSTTVNVLVLAQAARPLLAPGDEIVVTNQDHEANSTPWRRLAQEGVTVREW 143          
BLAST of mRNA_P-wetherbeei_contig52236.1.1 vs. uniprot
Match: A0A7V2ADZ3_9GAMM (Aminotransferase class V-fold PLP-dependent enzyme (Fragment) n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7V2ADZ3_9GAMM)

HSP 1 Score: 151 bits (381), Expect = 5.930e-43
Identity = 73/133 (54.89%), Postives = 95/133 (71.43%), Query Frame = 1
Query:   13 DTAFVRGQFPPLADGWVFVENAGGTYVPRQVVDRTREYMSETQVQPNWGFASSMLATDRIARGKHLMAEFINADHDEIVLGASTTLHVYLMAQSLRRQFQPGDEIIVSEQDHEANVGAWRELAEFGRVIRDWR 411
            DTA+ R  FP L  GW   ENAGGT VP  V+DR   YM E+QVQP  G+A+S LA  R+A G  +MAE +NA  +E+++G STT++VYL+AQ+LR  F+ GDEIIV++ DHEAN GAWR LAE G  + +W+
Sbjct:    8 DTAYARTFFPALGAGWALFENAGGTLVPTTVLDRLNAYMRESQVQPGAGYAASELAAQRMAHGHRMMAELLNAAPEEVMVGPSTTMNVYLLAQALRPGFRDGDEIIVTDLDHEANNGAWRRLAETGLRMVEWK 140          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52236.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C7NKW5_9PROT2.080e-6777.44Aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A5J6MLP4_9PROT1.400e-5260.00Cysteine desulfurase-like protein n=1 Tax=Hyperici... [more]
A0A5J6MX54_9PROT1.860e-4957.46Cysteine desulfurase-like protein n=1 Tax=Hyperici... [more]
A0A836TS05_9PROT4.780e-4960.90Aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A418WGF5_9PROT6.780e-4657.89Aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A523KH60_9GAMM1.370e-4457.35Cysteine desulfurase-like protein n=1 Tax=Gammapro... [more]
A0A317EAT8_9PROT6.670e-4456.39Uncharacterized protein n=2 Tax=Zavarzinia compran... [more]
A0A317EGC9_9PROT1.680e-4355.64Aminotran_5 domain-containing protein n=2 Tax=Zava... [more]
UPI001F3CFAF25.930e-4354.89aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A7V2ADZ3_9GAMM5.930e-4354.89Aminotransferase class V-fold PLP-dependent enzyme... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52236contigP-wetherbeei_contig52236:2..412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1380391.JIAS01000003_gene1778
PFAMsAminotran_5
Model size411
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.99e-59
EggNOG OGsCOG0520@1|root,COG0520@2|Bacteria,1MUPD@1224|Proteobacteria,2TRNY@28211|Alphaproteobacteria,2JPRG@204441|Rhodospirillales
DescriptionCatalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
Cds size411
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186783.4256637-CDS-P-wetherbeei_contig52236:1..4121683186783.4256637-CDS-P-wetherbeei_contig52236:1..412Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52236 2..412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52236.1.1prot_P-wetherbeei_contig52236.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52236 2..412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52236.1.1

>prot_P-wetherbeei_contig52236.1.1 ID=prot_P-wetherbeei_contig52236.1.1|Name=mRNA_P-wetherbeei_contig52236.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
MTTLDTAFVRGQFPPLADGWVFVENAGGTYVPRQVVDRTREYMSETQVQP
NWGFASSMLATDRIARGKHLMAEFINADHDEIVLGASTTLHVYLMAQSLR
RQFQPGDEIIVSEQDHEANVGAWRELAEFGRVIRDWR
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mRNA from alignment at P-wetherbeei_contig52236:2..412-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52236.1.1 ID=mRNA_P-wetherbeei_contig52236.1.1|Name=mRNA_P-wetherbeei_contig52236.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig52236:2..412- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCACGCTCGATACCGCGTTTGTGCGCGGACAGTTTCCGCCGCTCGC CGATGGCTGGGTGTTCGTCGAGAATGCCGGCGGCACCTATGTGCCGCGCC AGGTGGTCGACCGCACCCGCGAATATATGAGCGAGACGCAGGTGCAGCCG AACTGGGGCTTCGCCTCCTCCATGCTGGCGACAGACCGCATCGCGCGCGG CAAGCATCTGATGGCGGAGTTCATCAACGCCGATCACGATGAGATCGTGC TGGGCGCCTCGACGACCTTGCACGTCTACCTGATGGCGCAGTCCTTGCGC CGGCAGTTCCAGCCGGGCGACGAGATCATCGTCAGCGAGCAGGATCACGA AGCCAATGTCGGCGCCTGGCGCGAGCTGGCGGAATTCGGCCGGGTGATCC GGGATTGGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52236:2..412-

>mRNA_P-wetherbeei_contig52236.1.1 ID=mRNA_P-wetherbeei_contig52236.1.1|Name=mRNA_P-wetherbeei_contig52236.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig52236:2..412- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCACGCTCGATACCGCGTTTGTGCGCGGACAGTTTCCGCCGCTCGC
CGATGGCTGGGTGTTCGTCGAGAATGCCGGCGGCACCTATGTGCCGCGCC
AGGTGGTCGACCGCACCCGCGAATATATGAGCGAGACGCAGGTGCAGCCG
AACTGGGGCTTCGCCTCCTCCATGCTGGCGACAGACCGCATCGCGCGCGG
CAAGCATCTGATGGCGGAGTTCATCAACGCCGATCACGATGAGATCGTGC
TGGGCGCCTCGACGACCTTGCACGTCTACCTGATGGCGCAGTCCTTGCGC
CGGCAGTTCCAGCCGGGCGACGAGATCATCGTCAGCGAGCAGGATCACGA
AGCCAATGTCGGCGCCTGGCGCGAGCTGGCGGAATTCGGCCGGGTGATCC
GGGATTGGCGG
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