mRNA_P-wetherbeei_contig5223.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5223.1.1
Unique NamemRNA_P-wetherbeei_contig5223.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5223.1.1 vs. uniprot
Match: A0A6H5LQU7_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LQU7_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.090e-18
Identity = 39/54 (72.22%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 FWPAVIRSSLSVRGVLGLLKAGPSTIRGAFAMALMVRGFKKGLMKFVIITGRKP 162
            FWPAVIRSS+S +G++GLLK+GP TIRGA AM LMVRG+K+GL+KF +ITG+KP
Sbjct:  342 FWPAVIRSSVSFQGIVGLLKSGPVTIRGAVAMLLMVRGYKRGLVKFALITGKKP 395
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BLAST of mRNA_P-wetherbeei_contig5223.1.1 vs. uniprot
Match: A0A7S2UZA4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZA4_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.610e-16
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 FWPAVIRSSLSVRGVLGLLKAGPSTIRGAFAMALMVRGFKKGLMKFVIITGRKPA 165
            FWPAVIRSSLS RG+ GL ++GP T RGA AM LM+RG+ KGL+KF +IT  KPA
Sbjct:  135 FWPAVIRSSLSFRGLRGLWRSGPRTSRGALAMILMIRGYNKGLIKFGLITAAKPA 189
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BLAST of mRNA_P-wetherbeei_contig5223.1.1 vs. uniprot
Match: A0A388L934_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L934_CHABU)

HSP 1 Score: 76.6 bits (187), Expect = 1.840e-16
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 FWPAVIRSSLSVRGVLGLLKAGPSTIRGAFAMALMVRGFKKGLMKFVIITGRKP 162
            FWPAVI S++SV+G++GLL++G  TIRGA  M LMV G+KKGL+KF +IT RKP
Sbjct:   81 FWPAVIESAISVQGLVGLLRSGLKTIRGALVMRLMVEGYKKGLIKFALITCRKP 134
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BLAST of mRNA_P-wetherbeei_contig5223.1.1 vs. uniprot
Match: A0A2G9H9V6_9LAMI (Tocopherol O-methyltransferase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9H9V6_9LAMI)

HSP 1 Score: 78.6 bits (192), Expect = 2.020e-16
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 FWPAVIRSSLSVRGVLGLLKAGPSTIRGAFAMALMVRGFKKGLMKFVIITGRKPA 165
            FWPAVI+S+L+ +G+  LL++G  TIRGAFAM LM++G+KKGL+KF IIT RKPA
Sbjct:  179 FWPAVIKSALTWKGITSLLRSGWKTIRGAFAMPLMIKGYKKGLIKFAIITCRKPA 233
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BLAST of mRNA_P-wetherbeei_contig5223.1.1 vs. uniprot
Match: A0A836C920_9STRA (Gamma-tocopherol methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C920_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.790e-16
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 FWPAVIRSSLSVRGVLGLLKAGPSTIRGAFAMALMVRGFKKGLMKFVIITGRKP 162
            FWPAVI+SSLS RG+ GL++AGP  IRGA AM LMVRGFK  L+KF +IT RKP
Sbjct:  260 FWPAVIKSSLSGRGIRGLVRAGPGIIRGALAMLLMVRGFKLNLVKFGLITARKP 313
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BLAST of mRNA_P-wetherbeei_contig5223.1.1 vs. uniprot
Match: A0A2G9GU38_9LAMI (SAM-dependent methyltransferase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GU38_9LAMI)

HSP 1 Score: 78.6 bits (192), Expect = 7.940e-16
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 FWPAVIRSSLSVRGVLGLLKAGPSTIRGAFAMALMVRGFKKGLMKFVIITGRKPA 165
            FWPAVI+S+L+ +G+  LL++G  TIRGAFAM LM++G+KKGL+KF IIT RKPA
Sbjct:  307 FWPAVIKSALTWKGITSLLRSGWKTIRGAFAMPLMIKGYKKGLIKFAIITCRKPA 361
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BLAST of mRNA_P-wetherbeei_contig5223.1.1 vs. uniprot
Match: A0A2G9GTZ1_9LAMI (SAM-dependent methyltransferase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GTZ1_9LAMI)

HSP 1 Score: 77.8 bits (190), Expect = 1.600e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 FWPAVIRSSLSVRGVLGLLKAGPSTIRGAFAMALMVRGFKKGLMKFVIITGRKPA 165
            FWPAVI+S+L+ +G+  LL++G  TIRGAFAM LM+ G+KKGL+KF IIT RKPA
Sbjct:  317 FWPAVIKSALTWKGITSLLRSGWKTIRGAFAMPLMIEGYKKGLIKFAIITCRKPA 371
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BLAST of mRNA_P-wetherbeei_contig5223.1.1 vs. uniprot
Match: A0A0D6QZ18_ARACU (Methyltransf_11 domain-containing protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6QZ18_ARACU)

HSP 1 Score: 77.4 bits (189), Expect = 2.170e-15
Identity = 34/55 (61.82%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 FWPAVIRSSLSVRGVLGLLKAGPSTIRGAFAMALMVRGFKKGLMKFVIITGRKPA 165
            FWPAVIRS+ S R + G+L++G  T++GAFAM LMV+G+K+GL+KF +IT RKPA
Sbjct:  314 FWPAVIRSAFSWRAIAGVLRSGWKTLKGAFAMTLMVKGYKQGLIKFAVITARKPA 368
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BLAST of mRNA_P-wetherbeei_contig5223.1.1 vs. uniprot
Match: UPI000C1CDAFA (probable tocopherol O-methyltransferase, chloroplastic n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CDAFA)

HSP 1 Score: 73.9 bits (180), Expect = 2.400e-15
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 FWPAVIRSSLSVRGVLGLLKAGPSTIRGAFAMALMVRGFKKGLMKFVIITGRKP 162
            FWPAVI+S+L+ +G+  LL++G  TI+GA AM LM+ G+KKGL+KF IIT RKP
Sbjct:   94 FWPAVIKSALTWKGITSLLRSGWKTIKGALAMPLMIEGYKKGLIKFAIITSRKP 147
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BLAST of mRNA_P-wetherbeei_contig5223.1.1 vs. uniprot
Match: A0A0S3SEE1_PHAAN (Methyltransf_11 domain-containing protein n=8 Tax=Phaseoleae TaxID=163735 RepID=A0A0S3SEE1_PHAAN)

HSP 1 Score: 75.5 bits (184), Expect = 6.810e-15
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 FWPAVIRSSLSVRGVLGLLKAGPSTIRGAFAMALMVRGFKKGLMKFVIITGRKP 162
            FWPAVIRS+L+  G+  LL++G  TI+GA AM LM++G+KKGL+KFVIIT RKP
Sbjct:  245 FWPAVIRSALTWNGLTSLLRSGVKTIKGALAMPLMIKGYKKGLIKFVIITCRKP 298
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5223.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LQU7_9PHAE1.090e-1872.22Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A7S2UZA4_9STRA1.610e-1667.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A388L934_CHABU1.840e-1664.81Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A2G9H9V6_9LAMI2.020e-1665.45Tocopherol O-methyltransferase n=1 Tax=Handroanthu... [more]
A0A836C920_9STRA4.790e-1670.37Gamma-tocopherol methyltransferase n=1 Tax=Tribone... [more]
A0A2G9GU38_9LAMI7.940e-1665.45SAM-dependent methyltransferase n=1 Tax=Handroanth... [more]
A0A2G9GTZ1_9LAMI1.600e-1565.45SAM-dependent methyltransferase n=1 Tax=Handroanth... [more]
A0A0D6QZ18_ARACU2.170e-1561.82Methyltransf_11 domain-containing protein n=2 Tax=... [more]
UPI000C1CDAFA2.400e-1561.11probable tocopherol O-methyltransferase, chloropla... [more]
A0A0S3SEE1_PHAAN6.810e-1564.81Methyltransf_11 domain-containing protein n=8 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5223contigP-wetherbeei_contig5223:130..294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHY0
Preferred nameTMT
PFAMsCMAS,Methyltransf_11
Model size165
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC01662
KEGG koko:K05928
KEGG ReactionR07236,R07504,R10491,R10492
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00112
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006766,GO:0006775,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0009058,GO:0009110,GO:0009507,GO:0009536,GO:0009987,GO:0010189,GO:0016740,GO:0016741,GO:0018130,GO:0032259,GO:0042360,GO:0042362,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050342,GO:0071704,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617
Exons1
Evalue2.46e-19
EggNOG OGsCOG0500@1|root,KOG1269@2759|Eukaryota
EC2.1.1.95
Descriptionsterol 24-C-methyltransferase activity
Cds size165
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186783.1947558-CDS-P-wetherbeei_contig5223:129..2941683186783.1947558-CDS-P-wetherbeei_contig5223:129..294Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5223 130..294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5223.1.1prot_P-wetherbeei_contig5223.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5223 130..294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5223.1.1

>prot_P-wetherbeei_contig5223.1.1 ID=prot_P-wetherbeei_contig5223.1.1|Name=mRNA_P-wetherbeei_contig5223.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp
FWPAVIRSSLSVRGVLGLLKAGPSTIRGAFAMALMVRGFKKGLMKFVIIT
GRKPA
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mRNA from alignment at P-wetherbeei_contig5223:130..294+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5223.1.1 ID=mRNA_P-wetherbeei_contig5223.1.1|Name=mRNA_P-wetherbeei_contig5223.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig5223:130..294+ (Phaeothamnion wetherbeei SAG_119_79)
TTTTGGCCGGCGGTGATCCGCTCGTCCCTGTCAGTGCGGGGCGTGCTCGG
CCTCCTGAAGGCCGGCCCGTCCACCATTCGCGGCGCCTTCGCCATGGCGC
TCATGGTGCGCGGCTTCAAAAAGGGCTTGATGAAATTCGTCATCATCACC
GGCAGGAAGCCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5223:130..294+

>mRNA_P-wetherbeei_contig5223.1.1 ID=mRNA_P-wetherbeei_contig5223.1.1|Name=mRNA_P-wetherbeei_contig5223.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig5223:130..294+ (Phaeothamnion wetherbeei SAG_119_79)
TTTTGGCCGGCGGTGATCCGCTCGTCCCTGTCAGTGCGGGGCGTGCTCGG
CCTCCTGAAGGCCGGCCCGTCCACCATTCGCGGCGCCTTCGCCATGGCGC
TCATGGTGCGCGGCTTCAAAAAGGGCTTGATGAAATTCGTCATCATCACC
GGCAGGAAGCCCGCC
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