mRNA_P-wetherbeei_contig52160.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52160.1.1
Unique NamemRNA_P-wetherbeei_contig52160.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: A0A6L6AQA0_9ACTN (GAF domain-containing protein n=5 Tax=root TaxID=1 RepID=A0A6L6AQA0_9ACTN)

HSP 1 Score: 303 bits (775), Expect = 8.920e-100
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 1
Query:   79 MGDDVGSSHRARDRALTDDTATAARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
            MGDDV SSHRARDRALT+DTATAARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC
Sbjct:    1 MGDDVRSSHRARDRALTNDTATAARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 156          
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: A0A4Q2RQ87_9ACTN (GAF domain-containing protein n=2 Tax=Nocardioides glacieisoli TaxID=1168730 RepID=A0A4Q2RQ87_9ACTN)

HSP 1 Score: 270 bits (689), Expect = 2.000e-86
Identity = 139/182 (76.37%), Postives = 151/182 (82.97%), Query Frame = 1
Query:    1 HDTPGRRIGGRVAGGCNAGEARPGGTMGDDVGSSHRARDRALTDDTATAARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
            HDTP  RIGGRVA GC     R G  MG D  ++   RD+AL      AARPEISASWRRVRAGGLAPGAEP VAPLSEAE+ +RR++S LAPL+PSITASLEPVVDDGLL+V+TD DGRVLW+RGR GVRRLAD LGFV GSAWTE NVGTNAIGTCLV+GEPVHIRGPEHYVESHTRWSC
Sbjct:   13 HDTPASRIGGRVARGCK----RTGVDMGADARAARPTRDQALAGRPDAAARPEISASWRRVRAGGLAPGAEPAVAPLSEAEIATRRTSSALAPLMPSITASLEPVVDDGLLLVLTDVDGRVLWQRGRAGVRRLADTLGFVPGSAWTEVNVGTNAIGTCLVVGEPVHIRGPEHYVESHTRWSC 190          
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: A0A4V1RPY0_9ACTN (GAF domain-containing protein n=2 Tax=Nocardioides zhouii TaxID=1168729 RepID=A0A4V1RPY0_9ACTN)

HSP 1 Score: 265 bits (677), Expect = 3.840e-85
Identity = 134/157 (85.35%), Postives = 147/157 (93.63%), Query Frame = 1
Query:   79 MGDDVGSSHRARDRALT-DDTATAARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
            MG+DV ++  AR++AL   D+ATAARPEISASWRRVRAGGLAPGAEPEVAPLSE E+ SRR+ S LAPLLPSITASLEPVVDDGLL+VVTD+DGRVLW+RGRTGVRRLADRLGFV+GSAWTEANVGTNAIGTCLV+GEPVHIRGPEHYVESHTRWSC
Sbjct:    1 MGEDVRTARLAREQALGGSDSATAARPEISASWRRVRAGGLAPGAEPEVAPLSEVEIESRRTASELAPLLPSITASLEPVVDDGLLLVVTDTDGRVLWQRGRTGVRRLADRLGFVAGSAWTEANVGTNAIGTCLVVGEPVHIRGPEHYVESHTRWSC 157          
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: A0A1I1B269_9ACTN (GAF domain-containing protein n=1 Tax=Nocardioides alpinus TaxID=748909 RepID=A0A1I1B269_9ACTN)

HSP 1 Score: 265 bits (676), Expect = 5.270e-85
Identity = 133/156 (85.26%), Postives = 142/156 (91.03%), Query Frame = 1
Query:   79 MGDDVGSSHRARDRALTDDTATAARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
            MG+DV +SHRAR+RAL       + PEISASWRRVRAGGLAPGAEPEVAPLSE EV SRR++S LAPLL SITASLEPVVDDGLL+VVTD+DGRVLWRRGRTGVRRLADRLGFV GSAWTEANVGTNAIGTCLV+GEPVHIRGPEHYVESHTRWSC
Sbjct:    1 MGEDVRTSHRARERALATGIPVESSPEISASWRRVRAGGLAPGAEPEVAPLSEVEVESRRTSSALAPLLASITASLEPVVDDGLLLVVTDTDGRVLWRRGRTGVRRLADRLGFVPGSAWTEANVGTNAIGTCLVVGEPVHIRGPEHYVESHTRWSC 156          
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: UPI000D30759D (GAF domain-containing protein n=1 Tax=Nocardioides sediminis TaxID=433648 RepID=UPI000D30759D)

HSP 1 Score: 246 bits (629), Expect = 7.500e-78
Identity = 129/161 (80.12%), Postives = 139/161 (86.34%), Query Frame = 1
Query:   79 MGDDVGSSHRA----RDRALTDD-TATAARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
            MG D G   RA    R+RAL+   TA AARPEISASWRRVRAGGLAPGAEP V PLSE EV +RR++S LAPLLPSIT SL PVVDDGLL+VVTD+DGRVLWRRGR+GV+RLADRLGFV GSAWTEANVGTNAIGTCLV+GEPVHI GPEHYVESHTRWSC
Sbjct:    1 MGRDEGQHERAARLTRERALSGTGTAEAARPEISASWRRVRAGGLAPGAEPAVPPLSEGEVEARRASSALAPLLPSITTSLSPVVDDGLLVVVTDTDGRVLWRRGRSGVQRLADRLGFVRGSAWTEANVGTNAIGTCLVVGEPVHIHGPEHYVESHTRWSC 161          
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: A0A0Q9Q9D2_9ACTN (GAF domain-containing protein n=2 Tax=Nocardioides TaxID=1839 RepID=A0A0Q9Q9D2_9ACTN)

HSP 1 Score: 246 bits (628), Expect = 1.060e-77
Identity = 128/161 (79.50%), Postives = 138/161 (85.71%), Query Frame = 1
Query:   79 MGDDVGSSHRA----RDRALTDDTATA-ARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
            MG+D     RA    R+R L+   AT  ARPEISASWRRVRAGGLAPGAEP VAPL+E EV SRR++S L+PLLPSITASL PVVDDGLL+VVTD+DGRVLWRRGR GVRRLADRLGFV GSAWTEANVGTNAIGTCLV+GEPVHI GPEHYVESHTRWSC
Sbjct:    1 MGEDRRQGERAARLTRERVLSGGAATGVARPEISASWRRVRAGGLAPGAEPAVAPLTEGEVESRRASSALSPLLPSITASLSPVVDDGLLVVVTDTDGRVLWRRGRAGVRRLADRLGFVQGSAWTEANVGTNAIGTCLVVGEPVHIHGPEHYVESHTRWSC 161          
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: A0A0Q9T466_9ACTN (GAF domain-containing protein n=1 Tax=Nocardioides sp. Soil805 TaxID=1736416 RepID=A0A0Q9T466_9ACTN)

HSP 1 Score: 242 bits (618), Expect = 2.880e-76
Identity = 122/146 (83.56%), Postives = 130/146 (89.04%), Query Frame = 1
Query:  112 RDRALTDDTATA-ARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
            RDR L+       ARPEISASWRRVRAGGLAPGAEP VAPLSE EV SRR++S L PLLPSIT+SL PVVDDGLL+VVTD+DGRVLWRRGR+GVRRLADRLGFV GSAWTEANVGTNAIGTCLV+GEPVHI GPEHYVESHTRWSC
Sbjct:   16 RDRVLSGGAPVEEARPEISASWRRVRAGGLAPGAEPAVAPLSEGEVESRRASSALGPLLPSITSSLSPVVDDGLLVVVTDTDGRVLWRRGRSGVRRLADRLGFVQGSAWTEANVGTNAIGTCLVVGEPVHIHGPEHYVESHTRWSC 161          
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: A0A2R7YUW1_9ACTN (Diguanylate cyclase n=1 Tax=Nocardioides currus TaxID=2133958 RepID=A0A2R7YUW1_9ACTN)

HSP 1 Score: 236 bits (603), Expect = 8.830e-74
Identity = 119/148 (80.41%), Postives = 133/148 (89.86%), Query Frame = 1
Query:  106 RARDRALTDDTATAA-RPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
            R+RDR L+    +   RPEISASWRRVRAGGLAPGAEPEVAPL+E EV SRRSTS LAPLLPSIT+SL PVVDDGLL+VVTD++GRVLWR+G +GVRRLADRLGFV GSAWTE+NVGTNAIGT LV+GEPVHI+GPEHYV+SHTRWSC
Sbjct:    9 RSRDRVLSGGAPSPGIRPEISASWRRVRAGGLAPGAEPEVAPLTEGEVESRRSTSALAPLLPSITSSLAPVVDDGLLVVVTDTEGRVLWRQGSSGVRRLADRLGFVPGSAWTESNVGTNAIGTSLVVGEPVHIQGPEHYVDSHTRWSC 156          
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: R7XVY8_9ACTN (Transcriptional regulator n=2 Tax=Nocardioides TaxID=1839 RepID=R7XVY8_9ACTN)

HSP 1 Score: 234 bits (596), Expect = 6.090e-73
Identity = 117/148 (79.05%), Postives = 129/148 (87.16%), Query Frame = 1
Query:  106 RARDRALTDD-TATAARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
            RAR+R L+ D +    RPEISASWRRVRA GLAPGAEP VAPL+E+EV SRRSTS + PLLP IT SL P VDDGLL+VVTD+DGRVLWRRG +GVRRLAD LGFV GSAWTEANVGTNAIGTCLVLG+PVHI+GPEHYV+SHTRWSC
Sbjct:    9 RARERVLSGDGSPQEVRPEISASWRRVRASGLAPGAEPAVAPLTESEVESRRSTSAMVPLLPGITGSLSPAVDDGLLVVVTDTDGRVLWRRGGSGVRRLADGLGFVPGSAWTEANVGTNAIGTCLVLGQPVHIQGPEHYVQSHTRWSC 156          
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: A0A0K1JHW9_9MICO (GAF domain-containing protein n=1 Tax=Luteipulveratus mongoliensis TaxID=571913 RepID=A0A0K1JHW9_9MICO)

HSP 1 Score: 201 bits (511), Expect = 4.200e-60
Identity = 100/156 (64.10%), Postives = 120/156 (76.92%), Query Frame = 1
Query:   79 MGDDVGSSHRARDRALTDDTATAARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
            M D   +  R R+R L+     AARPEI+ASWRR+RA GL PG+ PEVAPL  +++  RR+TS L PLLP +T++L+ VVD G L+V+TD +GRVLWR+G + VRR ADRLGFVSGSAWTE NVGTNAIGTCLVL  PV IRG EHYVESHT+W C
Sbjct:    1 MDDQDRAQRRTRERVLSGGHGAAARPEIAASWRRLRASGLDPGSNPEVAPLDRSDIEERRTTSGLLPLLPHLTSALKSVVDAGQLVVITDREGRVLWRQGGSQVRRFADRLGFVSGSAWTEGNVGTNAIGTCLVLNAPVQIRGGEHYVESHTQWGC 156          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L6AQA0_9ACTN8.920e-10098.72GAF domain-containing protein n=5 Tax=root TaxID=1... [more]
A0A4Q2RQ87_9ACTN2.000e-8676.37GAF domain-containing protein n=2 Tax=Nocardioides... [more]
A0A4V1RPY0_9ACTN3.840e-8585.35GAF domain-containing protein n=2 Tax=Nocardioides... [more]
A0A1I1B269_9ACTN5.270e-8585.26GAF domain-containing protein n=1 Tax=Nocardioides... [more]
UPI000D30759D7.500e-7880.12GAF domain-containing protein n=1 Tax=Nocardioides... [more]
A0A0Q9Q9D2_9ACTN1.060e-7779.50GAF domain-containing protein n=2 Tax=Nocardioides... [more]
A0A0Q9T466_9ACTN2.880e-7683.56GAF domain-containing protein n=1 Tax=Nocardioides... [more]
A0A2R7YUW1_9ACTN8.830e-7480.41Diguanylate cyclase n=1 Tax=Nocardioides currus Ta... [more]
R7XVY8_9ACTN6.090e-7379.05Transcriptional regulator n=2 Tax=Nocardioides Tax... [more]
A0A0K1JHW9_9MICO4.200e-6064.10GAF domain-containing protein n=1 Tax=Luteipulvera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52160contigP-wetherbeei_contig52160:2..547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog110319.CF8_2554
PFAMsGAF
Model size546
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.98e-74
EggNOG OGsCOG3284@1|root,COG3284@2|Bacteria,2GJV4@201174|Actinobacteria,4DNT4@85009|Propionibacteriales
DescriptionGAF domain
Cds size546
COG categoryKQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186782.3699465-CDS-P-wetherbeei_contig52160:1..5471683186782.3699465-CDS-P-wetherbeei_contig52160:1..547Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52160 2..547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52160.1.1prot_P-wetherbeei_contig52160.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52160 2..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52160.1.1

>prot_P-wetherbeei_contig52160.1.1 ID=prot_P-wetherbeei_contig52160.1.1|Name=mRNA_P-wetherbeei_contig52160.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp
HDTPGRRIGGRVAGGCNAGEARPGGTMGDDVGSSHRARDRALTDDTATAA
RPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITA
SLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANV
GTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC
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mRNA from alignment at P-wetherbeei_contig52160:2..547+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52160.1.1 ID=mRNA_P-wetherbeei_contig52160.1.1|Name=mRNA_P-wetherbeei_contig52160.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig52160:2..547+ (Phaeothamnion wetherbeei SAG_119_79)
CACGACACACCCGGTCGTAGGATCGGCGGGAGGGTTGCAGGAGGTTGCAA CGCCGGGGAGGCCAGGCCGGGAGGCACGATGGGCGACGACGTCGGCAGCT CGCACCGCGCTCGCGACCGGGCACTGACCGACGACACCGCGACTGCTGCC CGTCCGGAGATCAGCGCCTCCTGGCGCCGGGTCCGCGCGGGTGGCCTGGC GCCTGGGGCCGAGCCCGAGGTGGCGCCGCTGTCGGAGGCCGAGGTGGTGT CCCGCCGCTCGACGAGCACGCTCGCTCCCCTGCTGCCGAGCATCACCGCC TCCCTGGAGCCCGTCGTCGACGACGGGCTGCTGATGGTGGTGACCGACTC GGACGGTCGGGTCCTGTGGCGCCGCGGGCGCACCGGCGTACGCCGTCTCG CCGACCGACTCGGCTTCGTGTCCGGGTCGGCCTGGACCGAGGCCAACGTC GGCACCAACGCGATCGGCACCTGTCTCGTCCTCGGCGAACCCGTGCACAT CCGGGGGCCCGAGCACTACGTCGAGTCGCACACACGGTGGAGCTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52160:2..547+

>mRNA_P-wetherbeei_contig52160.1.1 ID=mRNA_P-wetherbeei_contig52160.1.1|Name=mRNA_P-wetherbeei_contig52160.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig52160:2..547+ (Phaeothamnion wetherbeei SAG_119_79)
CACGACACACCCGGTCGTAGGATCGGCGGGAGGGTTGCAGGAGGTTGCAA
CGCCGGGGAGGCCAGGCCGGGAGGCACGATGGGCGACGACGTCGGCAGCT
CGCACCGCGCTCGCGACCGGGCACTGACCGACGACACCGCGACTGCTGCC
CGTCCGGAGATCAGCGCCTCCTGGCGCCGGGTCCGCGCGGGTGGCCTGGC
GCCTGGGGCCGAGCCCGAGGTGGCGCCGCTGTCGGAGGCCGAGGTGGTGT
CCCGCCGCTCGACGAGCACGCTCGCTCCCCTGCTGCCGAGCATCACCGCC
TCCCTGGAGCCCGTCGTCGACGACGGGCTGCTGATGGTGGTGACCGACTC
GGACGGTCGGGTCCTGTGGCGCCGCGGGCGCACCGGCGTACGCCGTCTCG
CCGACCGACTCGGCTTCGTGTCCGGGTCGGCCTGGACCGAGGCCAACGTC
GGCACCAACGCGATCGGCACCTGTCTCGTCCTCGGCGAACCCGTGCACAT
CCGGGGGCCCGAGCACTACGTCGAGTCGCACACACGGTGGAGCTGC
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