mRNA_P-wetherbeei_contig52129.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52129.2.1
Unique NamemRNA_P-wetherbeei_contig52129.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52129.2.1 vs. uniprot
Match: UPI0019969E4B (DUF4281 domain-containing protein n=1 Tax=Sandarakinorhabdus sp. TaxID=1916663 RepID=UPI0019969E4B)

HSP 1 Score: 65.9 bits (159), Expect = 1.020e-11
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   16 MNLEQIFSAMSLLAMVGWLCLALAPLRRPMLIAAARVIAAVLALAYVILIVRGLLQP-GRPEGGGFDSLAKVMILLSVPATML 261
            M LEQ+FS  S  A+VGW+ L LAP+RR   +  AR++AA+L  AY+  +V GL    G P G GF+SLA V +LLS P  +L
Sbjct:    1 MTLEQVFSLASAAALVGWVLLVLAPVRRRAAVTGARLVAALLCGAYLAFLVTGLTGGNGPPAGAGFNSLAGVRLLLSSPQALL 83          
BLAST of mRNA_P-wetherbeei_contig52129.2.1 vs. uniprot
Match: A0A2W4VDI1_9PROT (DUF4281 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2W4VDI1_9PROT)

HSP 1 Score: 59.7 bits (143), Expect = 2.710e-9
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   16 MNLEQIFSAMSLLAMVGWLCLALAPLRRPMLIAAARVIAAVLALAYVILIVRGLLQPGRPEGGGFDSLAKVMILLSVPATML 261
            M  +++F   +L+A++GW+ LA APL R  L+ AARVI   LAL Y  L++  +   G  EGGGF SL  V  L + P  +L
Sbjct:    1 MTTDRLFDIANLIALLGWIALAFAPLARDRLVLAARVIGVALALTYAGLLIGSIAGGGMSEGGGFTSLEGVTALFARPEAVL 82          
BLAST of mRNA_P-wetherbeei_contig52129.2.1 vs. uniprot
Match: UPI001C628134 (DUF4281 domain-containing protein n=1 Tax=Aquisediminimonas profunda TaxID=1550733 RepID=UPI001C628134)

HSP 1 Score: 56.2 bits (134), Expect = 5.480e-8
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   16 MNLEQIFSAMSLLAMVGWLCLALAPLRRPMLIAAARVIAAVLALAYVILIVRGLLQPGRPEGGGFDSLAKVMILLSVPATML 261
            M+LE I+S  S LAM+GWL LALAPL+R   IA AR++A +LA+AY+    +        +G GF SLA++  L + P  ++
Sbjct:    1 MHLEGIYSGTSALAMIGWLVLALAPLQRDSSIAFARILALLLAVAYLA---QFFFTTETIDGAGFGSLAEITALFTSPGNVM 79          
BLAST of mRNA_P-wetherbeei_contig52129.2.1 vs. uniprot
Match: A0A258FH18_9CAUL (Uncharacterized protein n=1 Tax=Brevundimonas subvibrioides TaxID=74313 RepID=A0A258FH18_9CAUL)

HSP 1 Score: 55.8 bits (133), Expect = 7.290e-8
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   16 MNLEQIFSAMSLLAMVGWLCLALAPLRRPMLIAAARVIAAVLALAYVILIVRGLLQPGRPEGGGFD 213
            M+LE  FS  + +A+VGW+ LALAPLRRP+ IAAAR I   LA+AY  L++R +       GGGF+
Sbjct:    1 MSLETQFSLANAVALVGWIILALAPLRRPLAIAAARTIGVALAVAYSALLIRAV------TGGGFE 60          
BLAST of mRNA_P-wetherbeei_contig52129.2.1 vs. uniprot
Match: A0A1S6EY41_9CAUL (Uncharacterized protein n=1 Tax=Brevundimonas sp. LM2 TaxID=1938605 RepID=A0A1S6EY41_9CAUL)

HSP 1 Score: 53.9 bits (128), Expect = 4.260e-7
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   16 MNLEQIFSAMSLLAMVGWLCLALAPLRRPMLIAAARVIAAVLALAYVILIVRGLLQPGRPEGGGFDSLAKVMILLSVPATML 261
            M L+ +F+  + +A+VGW+ LALAPLRRP+ IAAAR I   LA+AY +L+V+ +   G   GG   +LA +    S P  +L
Sbjct:    1 MTLDALFNLANAVALVGWVILALAPLRRPLAIAAARSIGVGLAVAYAVLLVQAVASGGL--GGDLTTLAGLTEGFSRPEAVL 80          
BLAST of mRNA_P-wetherbeei_contig52129.2.1 vs. uniprot
Match: A0A552UFI1_9SPHN (DUF4281 domain-containing protein n=1 Tax=Glacieibacterium frigidum TaxID=2593303 RepID=A0A552UFI1_9SPHN)

HSP 1 Score: 53.5 bits (127), Expect = 5.880e-7
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   16 MNLEQIFSAMSLLAMVGWLCLALAPLRRPMLIAAARVIAAVLALAYVILIVRGLLQPGRPEGGGFDSLAKVMILLSVPATML 261
            M L+Q+F   S + +VGWL LALAPL+RP ++  AR++AA+L   YV ++   L     P G  F +L  +  L S    +L
Sbjct:    1 MPLDQLFRIASTVVLVGWLALALAPLKRPAMVTTARLVAALLCGGYVAIVGHALATGPAPSGASFMTLDGIASLFSSRTALL 82          
BLAST of mRNA_P-wetherbeei_contig52129.2.1 vs. uniprot
Match: UPI0004959BC7 (ABA4-like family protein n=1 Tax=Brevundimonas bacteroides TaxID=74311 RepID=UPI0004959BC7)

HSP 1 Score: 53.1 bits (126), Expect = 8.420e-7
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   16 MNLEQIFSAMSLLAMVGWLCLALAPLRRPMLIAAARVIAAVLALAYVILIVRGLLQPGRPEGGGFD 213
            M+ E +FS  + +A+VGW+ LALAP+RR + IAAARVI   LA+ Y +L++R L+      GGGF+
Sbjct:    1 MSPETLFSVANAVALVGWIILALAPVRRLLAIAAARVIGVGLAVTYAVLLIRSLI------GGGFE 60          
BLAST of mRNA_P-wetherbeei_contig52129.2.1 vs. uniprot
Match: UPI001ADF79B6 (DUF4281 domain-containing protein n=1 Tax=Brevundimonas sp. AJA228-03 TaxID=2752515 RepID=UPI001ADF79B6)

HSP 1 Score: 53.1 bits (126), Expect = 8.720e-7
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   16 MNLEQIFSAMSLLAMVGWLCLALAPLRRPMLIAAARVIAAVLALAYVILIVRGLLQPGRPEGGGFDSLAKVMILLSVPATML 261
            M L+ +F+  + +A+VGW+ LALAPLRR ++IAAAR IA  LA+ Y +L+VR +   G   GG   +L+ +    S P  +L
Sbjct:    1 MTLDALFNIANTVALVGWIILALAPLRRDLVIAAARCIAIALAVTYTVLLVRAVAGGGL--GGDLTTLSGLTEGFSKPEAVL 80          
BLAST of mRNA_P-wetherbeei_contig52129.2.1 vs. uniprot
Match: D9QP53_BRESC (Putative integral membrane protein n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) TaxID=633149 RepID=D9QP53_BRESC)

HSP 1 Score: 49.3 bits (116), Expect = 2.690e-5
Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   16 MNLEQIFSAMSLLAMVGWLCLALAPLRRPMLIAAARVIAAVLALAYVILIVRGLLQPGRPEGGGFDSLAKVMILLSVPATML 261
            M L+ +F+  + +A+VGW+ LALAPL R ++IAAAR IA  LA+ Y +L+V+ +   G   GG   +L+ +    S P  +L
Sbjct:    1 MTLDTLFNVANTVALVGWIVLALAPLLRGLVIAAARCIAVALAVTYSVLLVQAVANGGL--GGDLTTLSGLTEGFSKPEAVL 80          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52129.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI0019969E4B1.020e-1149.40DUF4281 domain-containing protein n=1 Tax=Sandarak... [more]
A0A2W4VDI1_9PROT2.710e-942.68DUF4281 domain-containing protein n=1 Tax=Alphapro... [more]
UPI001C6281345.480e-843.90DUF4281 domain-containing protein n=1 Tax=Aquisedi... [more]
A0A258FH18_9CAUL7.290e-851.52Uncharacterized protein n=1 Tax=Brevundimonas subv... [more]
A0A1S6EY41_9CAUL4.260e-743.90Uncharacterized protein n=1 Tax=Brevundimonas sp. ... [more]
A0A552UFI1_9SPHN5.880e-739.02DUF4281 domain-containing protein n=1 Tax=Glacieib... [more]
UPI0004959BC78.420e-748.48ABA4-like family protein n=1 Tax=Brevundimonas bac... [more]
UPI001ADF79B68.720e-742.68DUF4281 domain-containing protein n=1 Tax=Brevundi... [more]
D9QP53_BRESC2.690e-540.24Putative integral membrane protein n=1 Tax=Brevund... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52129contigP-wetherbeei_contig52129:285..545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1123240.ATVO01000004_gene1144
PFAMsDUF4281
Model size261
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.17e-11
EggNOG OGs2DNUQ@1|root,32Z94@2|Bacteria,1N0X4@1224|Proteobacteria,2UD63@28211|Alphaproteobacteria,2K6AA@204457|Sphingomonadales
DescriptionDomain of unknown function (DUF4281)
Cds size246
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186781.6400602-UTR-P-wetherbeei_contig52129:284..2991683186781.6400602-UTR-P-wetherbeei_contig52129:284..299Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52129 285..299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186781.649802-CDS-P-wetherbeei_contig52129:299..5451683186781.649802-CDS-P-wetherbeei_contig52129:299..545Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52129 300..545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52129.2.1prot_P-wetherbeei_contig52129.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52129 300..545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52129.2.1

>prot_P-wetherbeei_contig52129.2.1 ID=prot_P-wetherbeei_contig52129.2.1|Name=mRNA_P-wetherbeei_contig52129.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
MNLEQIFSAMSLLAMVGWLCLALAPLRRPMLIAAARVIAAVLALAYVILI
VRGLLQPGRPEGGGFDSLAKVMILLSVPATML
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mRNA from alignment at P-wetherbeei_contig52129:285..545+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52129.2.1 ID=mRNA_P-wetherbeei_contig52129.2.1|Name=mRNA_P-wetherbeei_contig52129.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig52129:285..545+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGAGGGACCACCGATGAACCTCGAACAAATCTTCTCGGCCATGAGCCT GCTGGCCATGGTCGGCTGGCTGTGTCTGGCGCTGGCGCCGCTGCGGCGGC CGATGCTGATCGCGGCGGCCCGGGTGATCGCGGCGGTTCTGGCCCTGGCC TATGTGATCCTGATCGTGCGCGGTCTCCTCCAGCCCGGCAGACCGGAAGG CGGCGGCTTCGATTCCCTGGCCAAGGTGATGATCCTGCTGTCGGTTCCGG CGACCATGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52129:285..545+

>mRNA_P-wetherbeei_contig52129.2.1 ID=mRNA_P-wetherbeei_contig52129.2.1|Name=mRNA_P-wetherbeei_contig52129.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig52129:285..545+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCTCGAACAAATCTTCTCGGCCATGAGCCTGCTGGCCATGGTCGG
CTGGCTGTGTCTGGCGCTGGCGCCGCTGCGGCGGCCGATGCTGATCGCGG
CGGCCCGGGTGATCGCGGCGGTTCTGGCCCTGGCCTATGTGATCCTGATC
GTGCGCGGTCTCCTCCAGCCCGGCAGACCGGAAGGCGGCGGCTTCGATTC
CCTGGCCAAGGTGATGATCCTGCTGTCGGTTCCGGCGACCATGCTG
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