mRNA_P-wetherbeei_contig5210.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5210.2.1
Unique NamemRNA_P-wetherbeei_contig5210.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5210.2.1 vs. uniprot
Match: A0A2T1ED40_9CYAN (Uncharacterized protein n=1 Tax=Stenomitos frigidus ULC18 TaxID=2107698 RepID=A0A2T1ED40_9CYAN)

HSP 1 Score: 65.5 bits (158), Expect = 2.380e-7
Identity = 61/232 (26.29%), Postives = 102/232 (43.97%), Query Frame = 3 
Query:  210 FAKIYKHQSVNPVDYERWCFQRWFVILEYFEQLNDVSPVHCVVGLDADILLLKDPAQLLLANVPVDAVEAFHVSHDLAVRSLGAFMYWSLPGLERFTAFLTGVYQAPNPSFIKAGAIHIPGVQPDEFNSQLVPLKDAEGVMWHWSDMCVAVEFMKEDSPRRPRIVEVDVENVDINVGATSPASSMVTVLNG--NVHIW--QPPGTVIGGGDNMTRRVALIHFQGSSKFIVND 893
            FA +Y+H S NP++YE +CFQRWF++ ++  +      +     LD+D++L +D        +  D     +V   L      A        LERF +F+  +YQ P+   I   A          F +QL        +    SDM    E+ ++   +   ++E+  ++   + G T+  S    +LNG   +H    QP G  +    + T R  ++HFQG SK  + D
Sbjct:   60 FAHVYRHLSTNPIEYELFCFQRWFILKDFMSR----QALEQCFYLDSDVMLYED--------ITRDQQRLKNVQIALTADVPSAVFVNDFASLERFCSFVFNLYQNPDSFQIIEAA----------FKAQL-----QNNLATSISDMFAFAEYRRQYPHQVGDLLEIKDDST-YDAGMTT--SDGFELLNGVKAIHFQHQQPFGKHLDS--DKTIRFKVLHFQGRSKRSIKD 259
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BLAST of mRNA_P-wetherbeei_contig5210.2.1 vs. uniprot
Match: A0A3R6TG92_9BACT (Uncharacterized protein n=1 Tax=Parabacteroides sp. AF14-59 TaxID=2292240 RepID=A0A3R6TG92_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 2.760e-7
Identity = 66/291 (22.68%), Postives = 118/291 (40.55%), Query Frame = 3 
Query:   30 LSMSSRSLSSYVPEIQQAMRICGSDCRVHMLSNDLTVLNHSAALGLHTAEIKDFSRMGDRFAKIYKHQSVNPVDYERWCFQRWFVILEYFEQLNDVSPVHCVVGLDADILLLKDPAQLL---LANVPVDAVEAFHVSHDLAVRSLGAFMYWSLPGLERFTAFLTGVYQAPNPSFIKAGAIHIPGVQPDEFNSQLVPLKDAEGVMWHWSDMCVAVEFMKEDSPRRPRIVEVDVENVDINVGATSPASSMVTVLNGNVHI-WQPPGTVIG-GGDNMTRRVALIHFQGSSKFIV 887
            L  + R    Y+  + +  R    D  +++L ++    NH      H   I D+    + F K+Y+H S N  +YE +CFQRWF+IL++         +   V LD+D+LL  D   +L   +          +H   +L          +++  L++F  ++  +Y  P+ SF K           + + S ++  K          DM  A+E+  ++ P     + +  E++  + G  S +  +  + NG   I WQ          D    RV  +H  G  KF +
Sbjct:    7 LIFTHRGNDFYLNYVLRQARYFNGDADIYLLGDET---NHRYNFVNHVM-ISDYMSSANEFKKVYEHMSSNLYEYELFCFQRWFIILDFVRN----KKIENFVCLDSDVLLYCDMTSVLSSYIGKYDFTICNGYHPGFNL----------FNIESLDKFCHYMKMLYIEPS-SFCKLK---------ERYQSFILEKKPGGNC-----DM-TAIEYYVKEYPNAVLDIAIPKEHICFD-GGISGSFGLFEMYNGVKKIYWQQNIPYFRLSKDGSYIRVGGLHLDGKQKFAI 262
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BLAST of mRNA_P-wetherbeei_contig5210.2.1 vs. uniprot
Match: A0A846FS94_9CYAN (Uncharacterized protein n=1 Tax=Cyanothece sp. SIO1E1 TaxID=2607788 RepID=A0A846FS94_9CYAN)

HSP 1 Score: 63.5 bits (153), Expect = 3.900e-7
Identity = 60/248 (24.19%), Postives = 104/248 (41.94%), Query Frame = 3 
Query:  210 FAKIYKHQSVNPVDYERWCFQRWFVILEYFEQLNDVSPVHCVVGLDADILLLKDPAQLLLANVPVDAVEAFHVSHDLAVRSLGAFMYWS-LPGLERFTAFLTGVYQAPNPSFIKAGAIHIPGVQPDEFNSQLVPLKDAEGVMWHWSDMCVAVEFMKEDSPRRPRIVEVDVENVD-INVGATSPASSMVTVLNGNVHIWQPPGTVI----GGGDNMT-------RRVALIHFQGSSKFIVNDVVLALLR 914
            F   YKH S+N   +ER+CF+RWF++L     L   + +H  V +D+D  LL  P +LL      D  + F             F+++  L  L  F  ++  +Y   + + +K    +   +      S         G  +H+SDM   ++F +       +I +   +    + +    P +S+      N+H +    + I    G G  ++       +RV +IHFQG+SK  + D  L  LR
Sbjct:   68 FIDNYKHFSINKFSHERFCFERWFILLN----LAKTTQLHKFVYIDSDNFLLVPPNRLLETYTDYDYGQTFDPFAP-------EFIFFERLDALREFCNYIDNLYANDHETVLKVVLKNTAKIWGGTHPS---------GSSFHFSDMWAMLDFWENTQGNENQIYQFQTQKFKHVCLQECMPDASI------NIHSFNEYKSNIYRFDGKGSEVSVLHKGKWKRVNMIHFQGNSKRYIGDFYLQFLR 289
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BLAST of mRNA_P-wetherbeei_contig5210.2.1 vs. uniprot
Match: A0A5C6CUU9_9BACT (Uncharacterized protein n=1 Tax=Novipirellula galeiformis TaxID=2528004 RepID=A0A5C6CUU9_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.830e-6
Identity = 58/237 (24.47%), Postives = 99/237 (41.77%), Query Frame = 3 
Query:  177 EIKDFSRMGDRFAKIYKHQSVNPVDYERWCFQRWFVILEYFEQLNDVSPVHCVVGLDADILLLKDPAQLLLANVPVDAVEAFHVSHDLAVRSLGAFMYWSLPGLERFTAFLTGVYQAPNPSFIKAGAIHIPGVQPDEFNSQLVPLKDAEGVMWHWSDMCVAVEFMKEDSPRRPRIVEVDVENVDINVGATSPASSMVTVLNGNVHIWQ---PPGTVIGGGDNMTRRVALIHFQGSSK 878
            ++ D       F K+YKH+S N + +E +CFQRWFV+L++ ++   +    C    D+D+++  D ++L      VD V      H L V++          GLE F  ++  +Y                    D   +     + +EG +   SDM +A E+   + P R        E   I+ G        V  +  ++H W+   P G +  G + +  R   +HFQG +K
Sbjct:   51 DVADHFDSAKEFEKVYKHRSTNGIKFELFCFQRWFVLLQWMKE-QGIERCWCH---DSDVMIYSDMSELAEQYSDVDLVICAKSGHSLLVQNR--------QGLEDFCNYVLRMYTDETL---------------DAKLNAFFEQRQSEGGLGGISDM-LAFEYFAHEFPERVASSHQSYERGIIDPGM-HVTGDFVGDVRKSIH-WKNALPYGRLKDGNEAV--RFHSLHFQGGNK 255
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5210.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2T1ED40_9CYAN2.380e-726.29Uncharacterized protein n=1 Tax=Stenomitos frigidu... [more]
A0A3R6TG92_9BACT2.760e-722.68Uncharacterized protein n=1 Tax=Parabacteroides sp... [more]
A0A846FS94_9CYAN3.900e-724.19Uncharacterized protein n=1 Tax=Cyanothece sp. SIO... [more]
A0A5C6CUU9_9BACT1.830e-624.47Uncharacterized protein n=1 Tax=Novipirellula gale... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5210contigP-wetherbeei_contig5210:1603..3851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1150600.ADIARSV_2807
Model size2081
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.24e-08
EggNOG OGs2C7E6@1|root,32JF5@2|Bacteria,4NSF7@976|Bacteroidetes
Cds size1887
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186781.4315622-UTR-P-wetherbeei_contig5210:1602..16191683186781.4315622-UTR-P-wetherbeei_contig5210:1602..1619Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5210 1603..1619 +
1683186781.472248-UTR-P-wetherbeei_contig5210:3674..38511683186781.472248-UTR-P-wetherbeei_contig5210:3674..3851Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5210 3675..3851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186781.4424808-CDS-P-wetherbeei_contig5210:1619..18201683186781.4424808-CDS-P-wetherbeei_contig5210:1619..1820Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5210 1620..1820 +
1683186781.45247-CDS-P-wetherbeei_contig5210:1965..34991683186781.45247-CDS-P-wetherbeei_contig5210:1965..3499Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5210 1966..3499 +
1683186781.462355-CDS-P-wetherbeei_contig5210:3522..36741683186781.462355-CDS-P-wetherbeei_contig5210:3522..3674Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5210 3523..3674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5210.2.1prot_P-wetherbeei_contig5210.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5210 1620..3674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5210.2.1

>prot_P-wetherbeei_contig5210.2.1 ID=prot_P-wetherbeei_contig5210.2.1|Name=mRNA_P-wetherbeei_contig5210.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=629bp
MMGGLSMSSRSLSSYVPEIQQAMRICGSDCRVHMLSNDLTVLNHSAALGL
HTAEIKDFSRMGDRFAKIYKHQSVNPVDYERWCFQRWFVILEYFEQLNDV
SPVHCVVGLDADILLLKDPAQLLLANVPVDAVEAFHVSHDLAVRSLGAFM
YWSLPGLERFTAFLTGVYQAPNPSFIKAGAIHIPGVQPDEFNSQLVPLKD
AEGVMWHWSDMCVAVEFMKEDSPRRPRIVEVDVENVDINVGATSPASSMV
TVLNGNVHIWQPPGTVIGGGDNMTRRVALIHFQGSSKFIVNDVVLALLRR
GWDPTERASQVGGDTSIPPLSERTAACLDSMGEAAAQEQWAVGLCHSLFF
FVGGLEALDARFLGDFVADHPVMLRIQSADSRPHGDREGGQHLQTVYPID
ALRQNGSEATCGCNWDGCWYTCPALTKTVSATLSNRQLLYESWMQHSAGN
RDYSMFVETDPDLLLKFKCGMFPDVSTGVVVVRHPLCRGGKGSPEQWANV
WIEFLTRQLPEIASPVWLVRVEDAVRDPTRMREELHAVLGLPVLLSAYLD
NIHPLADGAVVSTYKDARSNDDCVALREHPSSWDDTPVAKLASALGYSLD
SEEPSERHSILLFSKTELLGISRELLTT*
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mRNA from alignment at P-wetherbeei_contig5210:1603..3851+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5210.2.1 ID=mRNA_P-wetherbeei_contig5210.2.1|Name=mRNA_P-wetherbeei_contig5210.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2249bp|location=Sequence derived from alignment at P-wetherbeei_contig5210:1603..3851+ (Phaeothamnion wetherbeei SAG_119_79)
TAGATCTCGTTTTTACGATGATGGGCGGCCTTAGCATGTCTTCGCGTTCG
CTCAGCAGCTACGTTCCAGAAATCCAGCAGGCCATGCGTATCTGCGGGAG
CGATTGCAGAGTTCACATGCTCAGCAATGACCTTACGGTGTTAAACCACT
CTGCGGCGCTCGGCCTTCATACGGCCGAAATCAAAGACTTTTCGAGGATG
GGCGATCGCTTCGCGAAGGCAAGTATTTTGGTGCAGCGCACGTGCATTCC
TTGGTGTACCTTGCCATCCTGTCTCTTTCTGTCTAAGCTTTTCCTCGAAC
ATTTTATGGTTCTAAAGTCTTTCTTCCGCCCCGCTGCCGCCTTGTTGGAC
CAACCCCGATCAGATTTACAAGCATCAATCCGTCAACCCTGTTGACTATG
AGCGTTGGTGCTTTCAGCGCTGGTTCGTCATTCTCGAGTACTTCGAACAA
CTGAATGACGTTTCGCCGGTGCACTGCGTCGTCGGCCTCGATGCGGACAT
TCTCCTGCTAAAAGACCCGGCACAGCTGCTTCTTGCCAACGTTCCTGTTG
ATGCGGTGGAGGCCTTCCATGTTTCTCACGATCTGGCGGTGCGGAGCCTG
GGTGCATTCATGTACTGGTCATTGCCCGGCTTGGAGCGCTTCACCGCCTT
CCTCACAGGTGTTTATCAGGCGCCGAATCCATCTTTCATCAAAGCAGGCG
CAATTCACATTCCTGGAGTGCAGCCAGACGAATTTAACAGCCAGCTCGTC
CCTTTGAAGGACGCTGAAGGGGTCATGTGGCACTGGTCGGACATGTGCGT
GGCAGTTGAATTTATGAAAGAGGACTCACCGCGAAGACCCCGCATCGTGG
AAGTCGACGTGGAAAATGTTGACATCAACGTCGGCGCTACATCTCCGGCC
TCCTCTATGGTCACCGTTCTTAATGGCAATGTCCACATTTGGCAGCCGCC
CGGTACCGTTATTGGAGGCGGAGATAATATGACGCGAAGGGTGGCATTGA
TACATTTTCAAGGCTCGAGCAAATTTATTGTCAACGACGTCGTGCTCGCC
CTTCTTCGGCGTGGTTGGGACCCGACTGAGCGTGCTAGCCAGGTGGGAGG
TGACACTTCGATTCCGCCGTTAAGCGAGCGCACGGCGGCATGCCTAGACA
GCATGGGTGAGGCGGCCGCCCAAGAGCAGTGGGCTGTGGGGCTGTGCCAC
TCGCTCTTCTTCTTTGTCGGCGGCTTAGAGGCTTTGGATGCCCGATTCCT
TGGAGACTTCGTCGCCGACCATCCAGTAATGCTTCGCATCCAATCCGCGG
ACAGCAGACCTCACGGCGACCGCGAAGGAGGGCAGCATCTGCAAACGGTG
TATCCCATCGATGCGCTCCGGCAGAACGGCAGCGAGGCCACCTGCGGTTG
CAACTGGGACGGCTGCTGGTACACGTGCCCAGCACTAACCAAGACCGTGT
CCGCGACGCTGTCCAACAGGCAGCTGCTATACGAGAGCTGGATGCAGCAT
TCTGCAGGCAATCGAGACTACTCCATGTTTGTGGAGACCGACCCCGATTT
ACTTTTGAAGTTCAAATGTGGCATGTTTCCCGATGTCTCGACAGGGGTCG
TGGTGGTGCGGCATCCGCTTTGCCGCGGTGGCAAAGGTTCCCCGGAGCAG
TGGGCCAATGTCTGGATCGAATTCTTGACCAGGCAGCTGCCGGAAATCGC
CAGCCCCGTCTGGCTGGTCCGGGTGGAAGACGCAGTGCGCGATCCCACCA
GGATGCGGGAAGAGCTACACGCTGTCCTTGGCCTTCCCGTGCTTCTCTCC
GCCTATCTGGACAACATCCATCCTCTCGCAGACGGGGCAGTTGTTTCGAC
GTACAAGGATGCGAGGTCGAATGACGATTGCGTCGCTTTGCGGGAACAGA
ACAGTTATTTGTCCGTGGGAACCCTTCGTCCTGGGACGACACCCCGGTTG
CGAAACTAGCTTCTGCTTTAGGCTACTCTCTGGACTCCGAGGAGCCCTCA
GAGCGTCATTCCATCCTCCTTTTCAGCAAAACAGAGCTGCTAGGAATATC
TCGAGAGCTCCTTACCACGTGACGTTTGAATTGTGGCAAGAATGGCAGCC
GATTCGACCTGAAGTCCTGGGAAGCGACTGTGGTCGGCACCAGACCAGAA
AATGGCCTGGAGCCGGCATCTCCGAGGAACTGCCCCACTGTGACAAAAGC
AAAACCAATTGGAGAAGTGTGTTTTGGTCCTGTTAATACTTACCGAGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5210:1603..3851+

>mRNA_P-wetherbeei_contig5210.2.1 ID=mRNA_P-wetherbeei_contig5210.2.1|Name=mRNA_P-wetherbeei_contig5210.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1887bp|location=Sequence derived from alignment at P-wetherbeei_contig5210:1603..3851+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGGGCGGCCTTAGCATGTCTTCGCGTTCGCTCAGCAGCTACGTTCC
AGAAATCCAGCAGGCCATGCGTATCTGCGGGAGCGATTGCAGAGTTCACA
TGCTCAGCAATGACCTTACGGTGTTAAACCACTCTGCGGCGCTCGGCCTT
CATACGGCCGAAATCAAAGACTTTTCGAGGATGGGCGATCGCTTCGCGAA
GATTTACAAGCATCAATCCGTCAACCCTGTTGACTATGAGCGTTGGTGCT
TTCAGCGCTGGTTCGTCATTCTCGAGTACTTCGAACAACTGAATGACGTT
TCGCCGGTGCACTGCGTCGTCGGCCTCGATGCGGACATTCTCCTGCTAAA
AGACCCGGCACAGCTGCTTCTTGCCAACGTTCCTGTTGATGCGGTGGAGG
CCTTCCATGTTTCTCACGATCTGGCGGTGCGGAGCCTGGGTGCATTCATG
TACTGGTCATTGCCCGGCTTGGAGCGCTTCACCGCCTTCCTCACAGGTGT
TTATCAGGCGCCGAATCCATCTTTCATCAAAGCAGGCGCAATTCACATTC
CTGGAGTGCAGCCAGACGAATTTAACAGCCAGCTCGTCCCTTTGAAGGAC
GCTGAAGGGGTCATGTGGCACTGGTCGGACATGTGCGTGGCAGTTGAATT
TATGAAAGAGGACTCACCGCGAAGACCCCGCATCGTGGAAGTCGACGTGG
AAAATGTTGACATCAACGTCGGCGCTACATCTCCGGCCTCCTCTATGGTC
ACCGTTCTTAATGGCAATGTCCACATTTGGCAGCCGCCCGGTACCGTTAT
TGGAGGCGGAGATAATATGACGCGAAGGGTGGCATTGATACATTTTCAAG
GCTCGAGCAAATTTATTGTCAACGACGTCGTGCTCGCCCTTCTTCGGCGT
GGTTGGGACCCGACTGAGCGTGCTAGCCAGGTGGGAGGTGACACTTCGAT
TCCGCCGTTAAGCGAGCGCACGGCGGCATGCCTAGACAGCATGGGTGAGG
CGGCCGCCCAAGAGCAGTGGGCTGTGGGGCTGTGCCACTCGCTCTTCTTC
TTTGTCGGCGGCTTAGAGGCTTTGGATGCCCGATTCCTTGGAGACTTCGT
CGCCGACCATCCAGTAATGCTTCGCATCCAATCCGCGGACAGCAGACCTC
ACGGCGACCGCGAAGGAGGGCAGCATCTGCAAACGGTGTATCCCATCGAT
GCGCTCCGGCAGAACGGCAGCGAGGCCACCTGCGGTTGCAACTGGGACGG
CTGCTGGTACACGTGCCCAGCACTAACCAAGACCGTGTCCGCGACGCTGT
CCAACAGGCAGCTGCTATACGAGAGCTGGATGCAGCATTCTGCAGGCAAT
CGAGACTACTCCATGTTTGTGGAGACCGACCCCGATTTACTTTTGAAGTT
CAAATGTGGCATGTTTCCCGATGTCTCGACAGGGGTCGTGGTGGTGCGGC
ATCCGCTTTGCCGCGGTGGCAAAGGTTCCCCGGAGCAGTGGGCCAATGTC
TGGATCGAATTCTTGACCAGGCAGCTGCCGGAAATCGCCAGCCCCGTCTG
GCTGGTCCGGGTGGAAGACGCAGTGCGCGATCCCACCAGGATGCGGGAAG
AGCTACACGCTGTCCTTGGCCTTCCCGTGCTTCTCTCCGCCTATCTGGAC
AACATCCATCCTCTCGCAGACGGGGCAGTTGTTTCGACGTACAAGGATGC
GAGGTCGAATGACGATTGCGTCGCTTTGCGGGAACACCCTTCGTCCTGGG
ACGACACCCCGGTTGCGAAACTAGCTTCTGCTTTAGGCTACTCTCTGGAC
TCCGAGGAGCCCTCAGAGCGTCATTCCATCCTCCTTTTCAGCAAAACAGA
GCTGCTAGGAATATCTCGAGAGCTCCTTACCACGTGA
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