mRNA_P-wetherbeei_contig521.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig521.1.1
Unique NamemRNA_P-wetherbeei_contig521.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig521.1.1 vs. uniprot
Match: A0A1I8ACE1_9BILA (RRM domain-containing protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I8ACE1_9BILA)

HSP 1 Score: 102 bits (255), Expect = 4.680e-24
Identity = 46/104 (44.23%), Postives = 70/104 (67.31%), Query Frame = 1
Query:   25 REERPFPTQPPYKAFVGNLKFDCTEEDIAFSLFQDCKVVDVHLAKDRETTMPRGFGYVEFEDADSLRTALSLNGATFIGRTVKVDLAETKQRDRGGGYGGGSGG 336
            R ++P PT+PPYKA+VGNL FDC + D    +F+DC +V++H+ +DRE+   +GF YVEF   + L   LS+NG  F  R +++D+A+  ++   GG+ GG GG
Sbjct:   10 RAQKPLPTEPPYKAYVGNLPFDCVQGDFD-DIFRDCSIVNIHMCRDRESDQFKGFAYVEFATVEDLEKGLSVNGHMFENRPLRIDVADAPRKQDRGGFRGGRGG 112          
BLAST of mRNA_P-wetherbeei_contig521.1.1 vs. uniprot
Match: A0A4V6S1H0_9AGAM (RRM domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4V6S1H0_9AGAM)

HSP 1 Score: 105 bits (263), Expect = 1.060e-23
Identity = 58/112 (51.79%), Postives = 75/112 (66.96%), Query Frame = 1
Query:    7 ERYAPQREERPFPTQPPYKAFVGNLKFDCTEEDIAFSLFQDCKVVDVHLAKDRETTMPRGFGYVEFEDADSLRTALSLNGATFIGRTVKVDLAETKQRDRGGGYGGGSGGRD 342
            +R  P RE+ P PTQPPY AF+GNL FD TE D+  S F D KV  V + KDR+   P+GFGYVEFED D+L+ ALS +G + + RT++V +AE  +   G  +GGG GG D
Sbjct:   55 DRLGPPREDLPLPTQPPYTAFIGNLAFDLTEMDLQ-SFFGDSKVKSVKVIKDRDER-PKGFGYVEFEDLDALKDALSRSGTSLMSRTIRVSVAEPPKERAG--FGGGFGGDD 162          
BLAST of mRNA_P-wetherbeei_contig521.1.1 vs. uniprot
Match: UPI0016029FED (eukaryotic translation initiation factor 4H-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016029FED)

HSP 1 Score: 98.6 bits (244), Expect = 1.260e-23
Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = 1
Query:   37 PFPTQPPYKAFVGNLKFDCTEEDIAFSLFQDCKVVDVHLAKDRETTMPRGFGYVEFEDADSLRTALSLNGATFIGRTVKVDLAETKQRDRGGGYGG 324
            P PT+PPY A+VGNL +   EED+  ++F   KV  V+L +DRET   RGFG+VEFEDA+SL+ AL  +GA+F  R +KV++A ++   RG GY G
Sbjct:    8 PLPTEPPYNAYVGNLPYQIVEEDVR-NIFSGLKVKSVNLVQDRETGRSRGFGFVEFEDAESLKQALEFDGASFGDRNLKVNVARSRPDGRGRGYXG 102          
BLAST of mRNA_P-wetherbeei_contig521.1.1 vs. uniprot
Match: A0A4U5N692_STECR (RRM domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5N692_STECR)

HSP 1 Score: 100 bits (250), Expect = 5.580e-23
Identity = 47/101 (46.53%), Postives = 73/101 (72.28%), Query Frame = 1
Query:   25 REERPFPTQPPYKAFVGNLKFDCTEEDIAFSLFQDCKVVDVHLAKDRETTMPRGFGYVEFEDADSLRTALSLNGATFIGRTVKVDLA-ETKQRDRGGGYGG 324
            R+++P PT+PP+KA+VGNL FDC + D    +F+DC++V+VH+ +DRET   +GF YVEF   + L+  LS++G  F  R +++D+A E +++DRGG  GG
Sbjct:   10 RQQKPLPTEPPFKAYVGNLPFDCVQGDFD-DIFRDCQIVNVHMCRDRETDNFKGFAYVEFGTVEDLQRGLSVHGHMFENRPLRIDVADEPRKKDRGGFRGG 109          
BLAST of mRNA_P-wetherbeei_contig521.1.1 vs. uniprot
Match: B3RJK9_TRIAD (Eukaryotic translation initiation factor 4H n=2 Tax=Trichoplax TaxID=10227 RepID=B3RJK9_TRIAD)

HSP 1 Score: 99.0 bits (245), Expect = 1.650e-22
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 1
Query:   25 REERPFPTQPPYKAFVGNLKFDCTEEDIAFSLFQDCKVVDVHLAKDRETTMPRGFGYVEFEDADSLRTALSLNGATFIGRTVKVDLAETKQRDRGGGYG 321
            R  +PFP +PPY A+VGNL F+C + D+   +F+   VV V L +DRET   RGF YVEF   + L+ AL  NG+ F  R +KVD+A  K+ DRGGG G
Sbjct:   22 RVRKPFPEEPPYTAYVGNLPFNCVQRDLE-QIFKHLDVVSVRLVRDRETDKFRGFCYVEFSSPEGLKEALEYNGSEFENRNIKVDIAGGKRNDRGGGNG 119          
BLAST of mRNA_P-wetherbeei_contig521.1.1 vs. uniprot
Match: A0A146IPT6_MYCCL (Translation initiation factor 4B n=2 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146IPT6_MYCCL)

HSP 1 Score: 100 bits (250), Expect = 5.980e-22
Identity = 50/100 (50.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:   19 PQREERPFPTQPPYKAFVGNLKFDCTEEDIAFSLFQDCKVVDVHLAKDRETTMPRGFGYVEFEDADSLRTALSLNGATFIGRTVKVDLAETKQRDRGGGY 318
            P RE+ P PTQPPY AF+GNL FD T+ ++    F   K+  V + KDRE   P+GFGY+EFED +SL+ AL+ +GA+F GRT++V +AE  +  +GGG+
Sbjct:   66 PPREDLPLPTQPPYTAFIGNLAFDLTDLELG-DFFGSEKIKTVKIIKDREEK-PKGFGYIEFEDLESLKDALAKSGASFSGRTIRVSVAEPPKERQGGGF 163          
BLAST of mRNA_P-wetherbeei_contig521.1.1 vs. uniprot
Match: A0A0C9XDH0_9AGAR (RRM domain-containing protein n=2 Tax=Laccaria TaxID=29882 RepID=A0A0C9XDH0_9AGAR)

HSP 1 Score: 100 bits (249), Expect = 7.880e-22
Identity = 53/104 (50.96%), Postives = 73/104 (70.19%), Query Frame = 1
Query:   19 PQREERPFPTQPPYKAFVGNLKFDCTEEDIAFSLFQDCKVVDVHLAKDRETTMPRGFGYVEFEDADSLRTALSLNGATFIGRTVKVDLAET-KQRDRGGGYGGG 327
            P RE+ P P+QPPY AF+GNL FD TE+D+  S F+  K   + + KD++   P+GFGYVEFED D L+ A++ +G+ F GRTV+V +AE  K+R   GG+GGG
Sbjct:   63 PPREDIPLPSQPPYTAFIGNLAFDLTEDDLG-SFFEGSKTKSIKIIKDKDDK-PKGFGYVEFEDLDGLKDAITKSGSNFSGRTVRVSVAEPPKER---GGFGGG 161          
BLAST of mRNA_P-wetherbeei_contig521.1.1 vs. uniprot
Match: UPI0006B07FA8 (eukaryotic translation initiation factor 4H-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B07FA8)

HSP 1 Score: 97.4 bits (241), Expect = 8.000e-22
Identity = 53/121 (43.80%), Postives = 73/121 (60.33%), Query Frame = 1
Query:    1 YQERYAPQREERPFPTQPPYKAFVGNLKFDCTEEDIAFSLFQDCKVVDVHLAKDRETTMPRGFGYVEFEDADSLRTALSLNGATFIGRTVKVDLAETKQRDRGGGY-----GGGSGGRDRG 348
            Y   Y  +   RP PT+PPY  F+GNL     + DI   +F   KV  + L +DRET   +G+ YVEF+D +SL++AL LNGA F+G  ++VD+AE ++ DR GG+     GG   G DRG
Sbjct:    5 YYNNYGSRGPSRPLPTEPPYTVFLGNLPQGIVQGDID-EIFSGLKVRSIRLVRDRETDRFKGYCYVEFDDLESLKSALELNGADFVGNLIRVDVAEGRRNDRSGGFTNRGRGGSGPGYDRG 124          
BLAST of mRNA_P-wetherbeei_contig521.1.1 vs. uniprot
Match: A0A5C3M8B2_9AGAR (RRM domain-containing protein n=1 Tax=Crucibulum laeve TaxID=68775 RepID=A0A5C3M8B2_9AGAR)

HSP 1 Score: 100 bits (248), Expect = 1.160e-21
Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 1
Query:    7 ERYAPQREERPFPTQPPYKAFVGNLKFDCTEEDIAFSLFQDCKVVDVHLAKDRETTMPRGFGYVEFEDADSLRTALSLNGATFIGRTVKVDLAET-KQRDRGGGYGG 324
            +R  P RE+ P PTQPPY AFVGNL FD TE+D+    F D K   + + KDR+   P+GFGYVEFED + L+ AL  +G+ F GRTV++ +AE  K+R    G+GG
Sbjct:   61 DRLGPPREDIPIPTQPPYTAFVGNLAFDLTEQDLE-QFFGDTKTKSIKIIKDRDEK-PKGFGYVEFEDVEGLKDALQKSGSNFSGRTVRISVAEPPKERS---GFGG 162          
BLAST of mRNA_P-wetherbeei_contig521.1.1 vs. uniprot
Match: UPI000440EBF8 (hypothetical protein n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000440EBF8)

HSP 1 Score: 100 bits (248), Expect = 1.260e-21
Identity = 56/108 (51.85%), Postives = 74/108 (68.52%), Query Frame = 1
Query:   19 PQREERPFPTQPPYKAFVGNLKFDCTEEDIAFSLFQDCKVVDVHLAKDRETTMPRGFGYVEFEDADSLRTALSLNGATFIGRTVKVDLAETKQRDRGGGYGGGSGGRD 342
            P RE+ P PTQPPY AF+GNL FD TE+D+  S F   +V +V + KDR+   P+GFGYVEFE  D L+ AL+ +G +  GRT++V +AE   ++RGG  GGG GG D
Sbjct:   64 PPREDIPLPTQPPYTAFIGNLAFDLTEQDLE-SFFGSFQVKNVKVIKDRDER-PKGFGYVEFEGLDDLKGALAQSGTSLSGRTIRVSVAEPP-KERGGFGGGGFGGDD 168          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig521.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I8ACE1_9BILA4.680e-2444.23RRM domain-containing protein n=1 Tax=Steinernema ... [more]
A0A4V6S1H0_9AGAM1.060e-2351.79RRM domain-containing protein n=1 Tax=Bondarzewia ... [more]
UPI0016029FED1.260e-2351.04eukaryotic translation initiation factor 4H-like n... [more]
A0A4U5N692_STECR5.580e-2346.53RRM domain-containing protein n=1 Tax=Steinernema ... [more]
B3RJK9_TRIAD1.650e-2249.49Eukaryotic translation initiation factor 4H n=2 Ta... [more]
A0A146IPT6_MYCCL5.980e-2250.00Translation initiation factor 4B n=2 Tax=Mycena ch... [more]
A0A0C9XDH0_9AGAR7.880e-2250.96RRM domain-containing protein n=2 Tax=Laccaria Tax... [more]
UPI0006B07FA88.000e-2243.80eukaryotic translation initiation factor 4H-like n... [more]
A0A5C3M8B2_9AGAR1.160e-2150.47RRM domain-containing protein n=1 Tax=Crucibulum l... [more]
UPI000440EBF81.260e-2151.85hypothetical protein n=1 Tax=Stereum hirsutum (str... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig521contigP-wetherbeei_contig521:120..781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5059.CADAFLAP00010410
Preferred nameTIF3
PFAMsRRM_1
Model size482
Max annot lvl4751|Fungi
KEGG koko:K03258
KEGG Pathwayko03013,ko04150,ko04151,ko05205,map03013,map04150,map04151,map05205
Hectar predicted targeting categoryother localisation
GOsGO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003727,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005844,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016043,GO:0016281,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0033592,GO:0034057,GO:0034622,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0043021,GO:0043024,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0065003,GO:0071704,GO:0071826,GO:0071840,GO:0097010,GO:0097159,GO:0097617,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons2
Evalue4.46e-24
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota,39V3F@33154|Opisthokonta,3NWTV@4751|Fungi,3QM1D@4890|Ascomycota,20DN7@147545|Eurotiomycetes,3S3V5@5042|Eurotiales
Ec32 ortholog descriptioneukaryotic initiation factor 4B
Ec32 orthologEc-23_000760.1
DescriptionTranslation initiation factor 4B
Cds size480
COG categoryA
BRITEko00000,ko00001,ko03012,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186781.176247-CDS-P-wetherbeei_contig521:121..5381683186781.176247-CDS-P-wetherbeei_contig521:121..538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig521 122..538 -
1683186781.18796-CDS-P-wetherbeei_contig521:718..7811683186781.18796-CDS-P-wetherbeei_contig521:718..781Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig521 719..781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig521.1.1prot_P-wetherbeei_contig521.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig521 122..781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig521.1.1

>prot_P-wetherbeei_contig521.1.1 ID=prot_P-wetherbeei_contig521.1.1|Name=mRNA_P-wetherbeei_contig521.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
YQERYAPQREERPFPTQPPYKAFVGNLKFDCTEEDIAFSLFQDCKVVDVH
LAKDRETTMPRGFGYVEFEDADSLRTALSLNGATFIGRTVKVDLAETKQR
DRGGGYGGGSGGRDRGYGGDRDRGYGGGGDRDRGGYGGDRDRGYGGDRDR
GVYAGDRDRG
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mRNA from alignment at P-wetherbeei_contig521:120..781-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig521.1.1 ID=mRNA_P-wetherbeei_contig521.1.1|Name=mRNA_P-wetherbeei_contig521.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=662bp|location=Sequence derived from alignment at P-wetherbeei_contig521:120..781- (Phaeothamnion wetherbeei SAG_119_79)
TACCAAGAGCGATACGCGCCGCAGCGGGAGGAGCGACCTTTTCCGACCCA GCCACCCTACAAGGTGACTCATTTTTGCCGGCATTGATAAGTTCTCTCTC CTTCTTATGTCAAAAATGGAGCGTCTGGATATCCTTCGCTTAGACGCCCT TGCTGAGCTCTCCTTGGACTTCTTTTAACCTGCTCTTCCATTTCTTAATT CATCTGCTCGCGCCGGTCCTTTTGTACTGCAACCGAAATAAAGGCCTTTG TTGGCAACCTGAAGTTTGATTGTACCGAAGAGGACATCGCGTTCAGCCTC TTTCAGGACTGCAAGGTCGTCGACGTGCACCTGGCGAAGGACAGGGAGAC CACCATGCCGCGGGGTTTCGGCTACGTGGAGTTTGAAGATGCAGACAGCC TGCGGACTGCGCTAAGTTTGAATGGCGCCACCTTCATTGGTCGGACAGTC AAGGTCGACCTTGCTGAAACGAAGCAGCGCGACCGCGGTGGCGGCTACGG TGGCGGTAGCGGCGGCCGCGATCGAGGCTACGGCGGGGACCGTGATCGGG GCTACGGTGGCGGCGGCGACCGCGACCGTGGCGGCTATGGCGGCGACCGC GACCGGGGCTACGGCGGCGACCGTGACCGCGGGGTCTATGCCGGAGACCG CGACCGTGGGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig521:120..781-

>mRNA_P-wetherbeei_contig521.1.1 ID=mRNA_P-wetherbeei_contig521.1.1|Name=mRNA_P-wetherbeei_contig521.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig521:120..781- (Phaeothamnion wetherbeei SAG_119_79)
TACCAAGAGCGATACGCGCCGCAGCGGGAGGAGCGACCTTTTCCGACCCA
GCCACCCTACAAGGCCTTTGTTGGCAACCTGAAGTTTGATTGTACCGAAG
AGGACATCGCGTTCAGCCTCTTTCAGGACTGCAAGGTCGTCGACGTGCAC
CTGGCGAAGGACAGGGAGACCACCATGCCGCGGGGTTTCGGCTACGTGGA
GTTTGAAGATGCAGACAGCCTGCGGACTGCGCTAAGTTTGAATGGCGCCA
CCTTCATTGGTCGGACAGTCAAGGTCGACCTTGCTGAAACGAAGCAGCGC
GACCGCGGTGGCGGCTACGGTGGCGGTAGCGGCGGCCGCGATCGAGGCTA
CGGCGGGGACCGTGATCGGGGCTACGGTGGCGGCGGCGACCGCGACCGTG
GCGGCTATGGCGGCGACCGCGACCGGGGCTACGGCGGCGACCGTGACCGC
GGGGTCTATGCCGGAGACCGCGACCGTGGG
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