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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 0 |
| Model size | 1598 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Cds size | 1281 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186780.9558384-CDS-P-wetherbeei_contig5208:779..1129 | 1683186780.9558384-CDS-P-wetherbeei_contig5208:779..1129 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig5208 780..1129 + |
| 1683186780.966486-CDS-P-wetherbeei_contig5208:1432..1755 | 1683186780.966486-CDS-P-wetherbeei_contig5208:1432..1755 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig5208 1433..1755 + |
| 1683186780.9766152-CDS-P-wetherbeei_contig5208:2174..2782 | 1683186780.9766152-CDS-P-wetherbeei_contig5208:2174..2782 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig5208 2175..2782 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186780.9866073-UTR-P-wetherbeei_contig5208:2782..3099 | 1683186780.9866073-UTR-P-wetherbeei_contig5208:2782..3099 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig5208 2783..3099 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5208.2.2 >prot_P-wetherbeei_contig5208.2.2 ID=prot_P-wetherbeei_contig5208.2.2|Name=mRNA_P-wetherbeei_contig5208.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=427bp
CIAGNDDRSVLVQVVYNSFRLFGLVTKFFWFPLVGNCVHPSFTLRLWFWL
IRQLRLTRLPLPRTRCGGLPFHIAAHFQKCSGAERCRPGAERCRSRLSVW
RGSRPRHGWNPQRQLFWRLAAAALRTGGGGCISDDGALHAGGIRRAFLCP
SSFVSRYCSYIIGIFCLQCAGRRLYCCVGFCFSAIRVLSHYPVPCSEDSP
FVTLSAKIVLFNSFSARRWGAGAEHGTDATAEASNSPALLFSNSSAGAQA
AKAAKAGGGRSPPRRRGGPDGYAGAAGAAGTAVDGADAGEDGEAEYDDDD
FDDEDAGAAEDEEGKDVEEEESLKDFDGLHGSVADLPDAVIRGGAPGAGL
STASHPAAAAVWEYGAEDGGGRAADGGISSGGGSGSGGDGDVDSSGEVSE
EDIEVERSGAMHDDVRFQMVEAVEPP* back to topmRNA from alignment at P-wetherbeei_contig5208:780..3099+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig5208.2.2 ID=mRNA_P-wetherbeei_contig5208.2.2|Name=mRNA_P-wetherbeei_contig5208.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2320bp|location=Sequence derived from alignment at P-wetherbeei_contig5208:780..3099+ (Phaeothamnion wetherbeei SAG_119_79)
TGCATCGCCGGCAACGACGACAGATCTGTGCTCGTGCAGGTGGTTTATAA
CAGTTTTCGTTTGTTTGGACTCGTCACAAAGTTTTTTTGGTTTCCCCTGG
TGGGCAACTGCGTTCACCCTTCGTTCACCCTTCGCCTTTGGTTTTGGCTC
ATTAGACAATTGCGCCTCACCCGACTTCCTCTTCCTCGCACGCGGTGCGG
CGGGCTTCCATTTCACATTGCAGCTCATTTCCAAAAGTGTTCCGGCGCCG
AGCGTTGTCGTCCCGGCGCCGAGCGTTGTCGAAGCCGGCTCAGCGTCTGG
CGTGGATCCCGGCCGAGGCACGGATGGAATCCACAGCGGCAACTCTTCTG
GTGAATCCTTGTGCTCGAAATCATACTCTATACAATCGCCCTGCTGCTAC
GGTTCAAGCTATCGTCTCGATCGGTCGCCTTCAGCGACTTTTCCCCAGAC
TGGAAATTAGCATTATGGTGTCACTTTGTGCCGCGGAACTGAAGAAGAGT
CGTATAATTTCAGCTGGCTGCCGCCGAGCCGTCGTTACTCAACTCAAGGC
GTTTACCTTAAAACTCGGCCTCGTGTAGAAACTGCAAGCACGAACGCGCA
CTAATGTTCTCGCGTTTCCCGTTCCTGTTTCTGCACATTTCTCTCGTGCG
TAGGAGGCTCGCCGCCGCGGCGCTACGCACCGGAGGCGGAGGATGCATTT
CGGATGACGGGGCACTTCACGCCGGCGGAATTCGGCGAGCCTTTCTCTGT
CCCTCTTCGTTCGTTTCCCGTTACTGTAGTTACATCATCGGAATATTTTG
CCTTCAGTGTGCTGGCCGACGCTTGTACTGTTGCGTCGGATTCTGCTTTT
CCGCCATAAGAGTTCTCTCCCACTATCCGGTTCCTTGTTCTGAAGATTCG
CCTTTTGTCACACTATCTGCTAAAATCGTTCTATTCAATTCATTTTCGGC
CAGGCGCTGGGGCGCCGGCGCAGAACGCGGAGGAGAGCGGCCAGGACTGG
CGCCGCCCGAGCTACACAGGCGCTGCATCGGAGTCGGACCGCGGCAGGTC
CGTTTCGCTTCCGCCGCGGATCTGTTGCGGCATGCAAAACGGGTTCCCCG
CAGAGCTGTGGAGCCGCTAGCCGCCATGCTGCGCGCGTTTAGATAGTTCT
CTTGTGCTGTATGAATTGAAAAATGAAACTCAATTCGTTCACCATTTTGG
TCCACTTTCGCACTTGGGAAATATCGTGGACCGACAGCGCGGCAGGGGTT
GCGCCAAAAAATGCGGCGTCTTACGGCGGGAGCGGCGGCATCGGCGATGG
CAGCGACGGCAATGGCACCACCGGCGACGGCAGTGGCGGCAGCGGCGGCG
GCAGCGGCGGCGGCAGCGGCGGGTACTTTGAGCGCGAGGGCCGAGACGGG
ACCGATGCGACGGCGGAGGCCTCCAACAGCCCGGCGCTTCTCTTTTCCAA
CAGCAGCGCCGGTGCACAAGCCGCGAAGGCCGCTAAGGCCGGCGGTGGAC
GCAGCCCTCCTCGCCGTCGTGGCGGGCCGGACGGGTATGCCGGTGCGGCG
GGGGCGGCGGGGACGGCGGTGGACGGAGCCGACGCCGGCGAGGACGGCGA
GGCAGAATACGACGACGACGATTTCGACGACGAAGACGCCGGCGCGGCAG
AAGACGAAGAAGGAAAAGATGTGGAAGAAGAGGAGAGCCTCAAAGACTTC
GATGGCCTCCATGGTAGCGTGGCGGACCTTCCGGACGCTGTCATCCGAGG
CGGCGCGCCCGGAGCCGGCCTCAGCACGGCGTCCCATCCGGCGGCGGCGG
CCGTATGGGAGTACGGTGCGGAAGACGGCGGCGGCAGAGCGGCGGACGGC
GGCATCAGCAGCGGCGGCGGCAGCGGTAGTGGCGGTGACGGCGATGTGGA
CAGCTCTGGAGAGGTGTCGGAAGAGGACATTGAGGTGGAGCGCAGCGGAG
CGATGCACGACGACGTGCGCTTCCAAATGGTTGAGGCGGTTGAGCCGCCG
TAACGGTCTTTCCGCCGAATAAACGATTCGAGAAGAGAGGAAGGAGCGGG
GCAATCGCTCTGCTATTCGGTCCGGCGTGGCCATGCTTTTGGCTCCCAGG
ACGTGCCCACCGGGCAGCAATTGATGAAGCGGCGCGGACAGGTCGGCCGC
CTCCTTGCAGCCATTTCGCACAATCGTGGGGCGGAGTGCTCGTAAGCTTG
CGACCCGGGAGAAGGGCAGCACAGTTGAAACAGAAGCGCAGTGGCAGGTC
AGACGGCGCATGCGCTCGACAGAGGAAGCAGGCAGATTCAGATTTGTAAC
ATTTAAAGCTTAAACTTAAA back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig5208:780..3099+ >mRNA_P-wetherbeei_contig5208.2.2 ID=mRNA_P-wetherbeei_contig5208.2.2|Name=mRNA_P-wetherbeei_contig5208.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1281bp|location=Sequence derived from alignment at P-wetherbeei_contig5208:780..3099+ (Phaeothamnion wetherbeei SAG_119_79)
TGCATCGCCGGCAACGACGACAGATCTGTGCTCGTGCAGGTGGTTTATAA
CAGTTTTCGTTTGTTTGGACTCGTCACAAAGTTTTTTTGGTTTCCCCTGG
TGGGCAACTGCGTTCACCCTTCGTTCACCCTTCGCCTTTGGTTTTGGCTC
ATTAGACAATTGCGCCTCACCCGACTTCCTCTTCCTCGCACGCGGTGCGG
CGGGCTTCCATTTCACATTGCAGCTCATTTCCAAAAGTGTTCCGGCGCCG
AGCGTTGTCGTCCCGGCGCCGAGCGTTGTCGAAGCCGGCTCAGCGTCTGG
CGTGGATCCCGGCCGAGGCACGGATGGAATCCACAGCGGCAACTCTTCTG
GAGGCTCGCCGCCGCGGCGCTACGCACCGGAGGCGGAGGATGCATTTCGG
ATGACGGGGCACTTCACGCCGGCGGAATTCGGCGAGCCTTTCTCTGTCCC
TCTTCGTTCGTTTCCCGTTACTGTAGTTACATCATCGGAATATTTTGCCT
TCAGTGTGCTGGCCGACGCTTGTACTGTTGCGTCGGATTCTGCTTTTCCG
CCATAAGAGTTCTCTCCCACTATCCGGTTCCTTGTTCTGAAGATTCGCCT
TTTGTCACACTATCTGCTAAAATCGTTCTATTCAATTCATTTTCGGCCAG
GCGCTGGGGCGCCGGCGCAGAACACGGGACCGATGCGACGGCGGAGGCCT
CCAACAGCCCGGCGCTTCTCTTTTCCAACAGCAGCGCCGGTGCACAAGCC
GCGAAGGCCGCTAAGGCCGGCGGTGGACGCAGCCCTCCTCGCCGTCGTGG
CGGGCCGGACGGGTATGCCGGTGCGGCGGGGGCGGCGGGGACGGCGGTGG
ACGGAGCCGACGCCGGCGAGGACGGCGAGGCAGAATACGACGACGACGAT
TTCGACGACGAAGACGCCGGCGCGGCAGAAGACGAAGAAGGAAAAGATGT
GGAAGAAGAGGAGAGCCTCAAAGACTTCGATGGCCTCCATGGTAGCGTGG
CGGACCTTCCGGACGCTGTCATCCGAGGCGGCGCGCCCGGAGCCGGCCTC
AGCACGGCGTCCCATCCGGCGGCGGCGGCCGTATGGGAGTACGGTGCGGA
AGACGGCGGCGGCAGAGCGGCGGACGGCGGCATCAGCAGCGGCGGCGGCA
GCGGTAGTGGCGGTGACGGCGATGTGGACAGCTCTGGAGAGGTGTCGGAA
GAGGACATTGAGGTGGAGCGCAGCGGAGCGATGCACGACGACGTGCGCTT
CCAAATGGTTGAGGCGGTTGAGCCGCCGTAA back to top
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