mRNA_P-wetherbeei_contig5208.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5208.1.1
Unique NamemRNA_P-wetherbeei_contig5208.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5208.1.1 vs. uniprot
Match: UPI001601B752 (centrosomal protein 43-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601B752)

HSP 1 Score: 75.1 bits (183), Expect = 9.200e-16
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    4 NLKEVVMDALEAKGVLGQIRASLRAAVFTCIDEYGA-----GLLGEDVPKPRDTEEGALAVQLVRDFLSHFGLGQTLSVFMAEVNMVSL 255
             L+++V   LE  GVLG+IRA LRA+VF  ++E GA      L+ +D+ K  +T+EG +   LVR+FL HF L  +L+VF  E N+V L
Sbjct:    8 ELRDLVAQTLETNGVLGKIRAQLRASVFLALEEQGALESKSQLVNQDLKKFLNTKEGRMVAALVREFLIHFNLDYSLAVFDPETNIVRL 96
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BLAST of mRNA_P-wetherbeei_contig5208.1.1 vs. uniprot
Match: A0A6H5JFJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.660e-14
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    4 NLKEVVMDALEAKGVLGQIRASLRAAVFTCIDEYGAGLLGEDVPKP-----RDTEEGALAVQLVRDFLSHFGLGQTLSVFMAEVNMVS 252
            +L++VV  ALE KGVL QIRASLRAAVFT +DE+     G  VP P     +    G LA+Q+V DFL H+ L QTLSV   E +M +
Sbjct:    6 DLRDVVKKALEGKGVLAQIRASLRAAVFTVVDEHER-TAGVHVPNPAALVVKHDTVGRLALQVVADFLEHWELHQTLSVLKLETDMAT 92
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BLAST of mRNA_P-wetherbeei_contig5208.1.1 vs. uniprot
Match: A0A6P5AV26_BRABE (FGFR1 oncogene partner-like isoform X4 n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5AV26_BRABE)

HSP 1 Score: 72.0 bits (175), Expect = 4.730e-13
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:    4 NLKEVVMDALEAKGVLGQIRASLRAAVFTCIDEYGA-----GLLGEDVPKPRDTEEGALAVQLVRDFLSHFGLGQTLSVFMAEVN 243
             L+++V   LE  GVLG+IRA LRA+VF  ++E GA      L+ +D+ K  +T+EG +   LVR+FL HF L  +L+VF  E N
Sbjct:    8 ELRDLVAQTLETNGVLGKIRAQLRASVFLALEEQGALESKSQLVNQDLKKFLNTKEGRMVAALVREFLIHFNLDYSLAVFDPETN 92
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BLAST of mRNA_P-wetherbeei_contig5208.1.1 vs. uniprot
Match: A0A6P5AL39_BRABE (FGFR1 oncogene partner-like isoform X1 n=10 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5AL39_BRABE)

HSP 1 Score: 72.0 bits (175), Expect = 8.000e-13
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:    4 NLKEVVMDALEAKGVLGQIRASLRAAVFTCIDEYGA-----GLLGEDVPKPRDTEEGALAVQLVRDFLSHFGLGQTLSVFMAEVN 243
             L+++V   LE  GVLG+IRA LRA+VF  ++E GA      L+ +D+ K  +T+EG +   LVR+FL HF L  +L+VF  E N
Sbjct:    8 ELRDLVAQTLETNGVLGKIRAQLRASVFLALEEQGALESKSQLVNQDLKKFLNTKEGRMVAALVREFLIHFNLDYSLAVFDPETN 92
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BLAST of mRNA_P-wetherbeei_contig5208.1.1 vs. uniprot
Match: UPI0003F08A7F (FGFR1 oncogene partner-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F08A7F)

HSP 1 Score: 72.0 bits (175), Expect = 8.030e-13
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:    4 NLKEVVMDALEAKGVLGQIRASLRAAVFTCIDEY-----GAGLLGEDVPKPRDTEEGALAVQLVRDFLSHFGLGQTLSVFMAEVNMVS 252
             L+++V   LE  GVLG+IRA LRA+VF  ++E      GA L+  D+ K   T+EG L + LVR+FL +F L  TL+VF  E N+ S
Sbjct:    8 ELRDLVAQTLENNGVLGKIRAQLRASVFLALEEQESIENGAPLINHDLKKFISTKEGVLTLSLVREFLQYFNLDFTLAVFDPETNIGS 95
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BLAST of mRNA_P-wetherbeei_contig5208.1.1 vs. uniprot
Match: UPI001455B94C (FGFR1 oncogene partner-like isoform X1 n=2 Tax=Asterias rubens TaxID=7604 RepID=UPI001455B94C)

HSP 1 Score: 68.2 bits (165), Expect = 1.840e-11
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:    4 NLKEVVMDALEAKGVLGQIRASLRAAVFTCIDEYGA-----GLLGEDVPKPRDTEEGALAVQLVRDFLSHFGLGQTLSVFMAEVN 243
             L+++V   LE+ GVLG+IRA LRA+VF  ++E  A       + +D+ K   T+EG L   LV++FL HF L  TL+VF  E N
Sbjct:    8 ELRDLVAQTLESSGVLGKIRAELRASVFLALEEQDAVQNKTPFINQDLKKFLSTKEGFLIASLVQEFLEHFRLDFTLAVFNPETN 92
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BLAST of mRNA_P-wetherbeei_contig5208.1.1 vs. uniprot
Match: A0A8J6CEF2_DIALT (FOP_dimer domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CEF2_DIALT)

HSP 1 Score: 67.8 bits (164), Expect = 2.550e-11
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    4 NLKEVVMDALEAKGVLGQIRASLRAAVFTCIDEYGAGLLGED--VPKPRDTEEGALAVQLVRDFLSHFGLGQTLSVFMAEVNM 246
             LK +V   LEAKGVLG+IRA LR++VF+ I E  A L GE   + + + + EG  A++LVR+FL   GL  T +V++ E N+
Sbjct:    9 ELKGIVQKTLEAKGVLGKIRAELRSSVFSAIQEEQADLSGESPVLRELKRSAEGRAALELVREFLVVCGLDYTTAVYVPEANL 91
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BLAST of mRNA_P-wetherbeei_contig5208.1.1 vs. uniprot
Match: F0WR59_9STRA (PREDICTED: similar to predicted protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WR59_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.970e-11
Identity = 30/78 (38.46%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:    4 NLKEVVMDALEAKGVLGQIRASLRAAVFTCIDEYGAGLLGEDVPKPRDTEEGALAVQLVRDFLSHFGLGQTLSVFMAE 237
             LKEV+ D LE++G LGQI+A +RA +F+ +D+       + +PKP  + E  +  +L+R++L + G    LSVF+ E
Sbjct:   11 ELKEVLKDTLESRGALGQIKARIRAEIFSALDD-------QSIPKPELSNENLILNELIREYLEYNGYRHALSVFLPE 81
[Close]
BLAST of mRNA_P-wetherbeei_contig5208.1.1 vs. uniprot
Match: A0A2D4BX57_PYTIN (LisH domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BX57_PYTIN)

HSP 1 Score: 63.2 bits (152), Expect = 6.760e-11
Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    4 NLKEVVMDALEAKGVLGQIRASLRAAVFTCIDEYGAGLLGEDVPKPRDTEEGALAVQLVRDFLSHFGLGQTLSVFMAE 237
            +LK V+ D LEA+G LGQI+A +RA +F+ +D++        VPKP+ + E  +  +L+R++L + G     SVF+AE
Sbjct:   18 DLKAVLKDTLEARGSLGQIKARIRAEIFSALDDHS-------VPKPKLSNENLIINELIREYLEYNGYRHAHSVFLAE 88
[Close]
BLAST of mRNA_P-wetherbeei_contig5208.1.1 vs. uniprot
Match: A0A2R5GRB5_9STRA (FGFR1 onco partner n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRB5_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 9.080e-11
Identity = 39/82 (47.56%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:    4 NLKEVVMDALEAKGVLGQIRASLRAAVFTCIDEY----GAGLLGEDVPKPRDTEEGALAVQLVRDFLSHFGLGQTLSVFMAE 237
             LK +V   LEAKGVLG IRA LRAAVFT +DE     G  L    V K + + E  L + L+ +F   + L +TLSVFM E
Sbjct:   22 QLKHIVSRTLEAKGVLGTIRAQLRAAVFTALDEQERANGVYLENYRVQKIKSSPESKLLLALMHEFFEFYELDRTLSVFMPE 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5208.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001601B7529.200e-1644.94centrosomal protein 43-like n=1 Tax=Branchiostoma ... [more]
A0A6H5JFJ8_9PHAE2.660e-1451.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6P5AV26_BRABE4.730e-1344.71FGFR1 oncogene partner-like isoform X4 n=3 Tax=Bra... [more]
A0A6P5AL39_BRABE8.000e-1344.71FGFR1 oncogene partner-like isoform X1 n=10 Tax=Br... [more]
UPI0003F08A7F8.030e-1345.45FGFR1 oncogene partner-like n=1 Tax=Saccoglossus k... [more]
UPI001455B94C1.840e-1143.53FGFR1 oncogene partner-like isoform X1 n=2 Tax=Ast... [more]
A0A8J6CEF2_DIALT2.550e-1145.78FOP_dimer domain-containing protein n=1 Tax=Diacro... [more]
F0WR59_9STRA5.970e-1138.46PREDICTED: similar to predicted protein putative n... [more]
A0A2D4BX57_PYTIN6.760e-1139.74LisH domain-containing protein n=1 Tax=Pythium ins... [more]
A0A2R5GRB5_9STRA9.080e-1147.56FGFR1 onco partner n=1 Tax=Hondaea fermentalgiana ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5208contigP-wetherbeei_contig5208:342..599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog10224.XP_006815156.1
Preferred nameFGFR1OP
PFAMsFOP_dimer
Model size258
Max annot lvl33208|Metazoa
KEGG koko:K16546
Hectar predicted targeting categoryother localisation
GOsGO:0000086,GO:0000278,GO:0001558,GO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004672,GO:0004713,GO:0004857,GO:0004860,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006464,GO:0006468,GO:0006469,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007049,GO:0007346,GO:0008150,GO:0008152,GO:0008284,GO:0009892,GO:0009987,GO:0010389,GO:0010563,GO:0010564,GO:0010605,GO:0015630,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018108,GO:0018193,GO:0018212,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0030234,GO:0030292,GO:0030307,GO:0030334,GO:0030335,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0032879,GO:0033673,GO:0036211,GO:0040008,GO:0040012,GO:0040017,GO:0042127,GO:0042325,GO:0042326,GO:0042802,GO:0042803,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043549,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0045859,GO:0045927,GO:0045936,GO:0046983,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050730,GO:0050732,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051246,GO:0051248,GO:0051270,GO:0051272,GO:0051338,GO:0051348,GO:0051640,GO:0051641,GO:0051726,GO:0060255,GO:0060271,GO:0061097,GO:0061099,GO:0065007,GO:0065009,GO:0070925,GO:0071704,GO:0071840,GO:0080090,GO:0097711,GO:0098772,GO:0120031,GO:0120036,GO:0140056,GO:0140096,GO:1901564,GO:1901987,GO:1901990,GO:1902749,GO:1903047,GO:2000145,GO:2000147
Exons1
Evalue1.32e-13
EggNOG OGs28IVC@1|root,2QR70@2759|Eukaryota,39RDW@33154|Opisthokonta,3B9PH@33208|Metazoa,3CWVZ@33213|Bilateria
Descriptionmicrotubule anchoring
Cds size258
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186781.0164108-CDS-P-wetherbeei_contig5208:341..5991683186781.0164108-CDS-P-wetherbeei_contig5208:341..599Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5208 342..599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5208.1.1prot_P-wetherbeei_contig5208.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5208 342..599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5208.1.1

>prot_P-wetherbeei_contig5208.1.1 ID=prot_P-wetherbeei_contig5208.1.1|Name=mRNA_P-wetherbeei_contig5208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
MNLKEVVMDALEAKGVLGQIRASLRAAVFTCIDEYGAGLLGEDVPKPRDT
EEGALAVQLVRDFLSHFGLGQTLSVFMAEVNMVSL*
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mRNA from alignment at P-wetherbeei_contig5208:342..599+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5208.1.1 ID=mRNA_P-wetherbeei_contig5208.1.1|Name=mRNA_P-wetherbeei_contig5208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig5208:342..599+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCTCAAAGAGGTGGTCATGGATGCACTCGAGGCCAAGGGAGTGCT
TGGGCAGATTCGTGCCTCCTTGCGGGCAGCCGTCTTCACCTGCATCGACG
AATATGGCGCCGGGCTCCTCGGGGAAGACGTGCCAAAGCCTCGAGACACC
GAGGAAGGGGCACTCGCCGTCCAGCTAGTGCGGGATTTTCTCAGTCACTT
TGGACTGGGGCAAACGCTCTCGGTCTTCATGGCCGAAGTCAACATGGTAA
GTCTTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5208:342..599+

>mRNA_P-wetherbeei_contig5208.1.1 ID=mRNA_P-wetherbeei_contig5208.1.1|Name=mRNA_P-wetherbeei_contig5208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig5208:342..599+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCTCAAAGAGGTGGTCATGGATGCACTCGAGGCCAAGGGAGTGCT
TGGGCAGATTCGTGCCTCCTTGCGGGCAGCCGTCTTCACCTGCATCGACG
AATATGGCGCCGGGCTCCTCGGGGAAGACGTGCCAAAGCCTCGAGACACC
GAGGAAGGGGCACTCGCCGTCCAGCTAGTGCGGGATTTTCTCAGTCACTT
TGGACTGGGGCAAACGCTCTCGGTCTTCATGGCCGAAGTCAACATGGTAA
GTCTTTGA
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