mRNA_P-wetherbeei_contig52061.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52061.1.1
Unique NamemRNA_P-wetherbeei_contig52061.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52061.1.1 vs. uniprot
Match: A0A7W0KGH2_9CHLR (Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0KGH2_9CHLR)

HSP 1 Score: 216 bits (549), Expect = 1.320e-68
Identity = 100/165 (60.61%), Postives = 119/165 (72.12%), Query Frame = 1
Query:    1 PDEVVAADRVVFPGDGHARTAMDTLHARGLVEAIHTSVNAGKPFLGVCVGMQLLFEEMEEGPTTGLGLLQGTVRKLPETVKVPQIGWNTVRFRDDSPLAHLDGAYFYFVHSFAPQATHTEDIAGETDYGTRFTSVVMRDNVWGTQFHPEKSGEDGLDLIRTWAAW 495
            PDEV AADRVV PG G+A  AM+ L   GL EA+  +  AGKP LGVC+GMQLLF + EEGPTTGLGLL GTVR LP   KVPQ+GWN   FR  +P++ ++ AYFYFVHS+        DIA +TDYG RF S+V RD +WG QFHPEKSG+DG+ L+RTW  W
Sbjct:   32 PDEVGAADRVVLPGVGNAAAAMNRLRETGLAEAVTEAAEAGKPVLGVCLGMQLLFGDQEEGPTTGLGLLPGTVRSLPAGHKVPQMGWNLAEFRPGTPMSMMNQAYFYFVHSYIVHPEEETDIAADTDYGVRFPSIVARDAIWGFQFHPEKSGDDGIALVRTWVDW 196          
BLAST of mRNA_P-wetherbeei_contig52061.1.1 vs. uniprot
Match: A0A838GHF9_9CHLR (Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A838GHF9_9CHLR)

HSP 1 Score: 207 bits (526), Expect = 4.130e-65
Identity = 97/165 (58.79%), Postives = 115/165 (69.70%), Query Frame = 1
Query:    1 PDEVVAADRVVFPGDGHARTAMDTLHARGLVEAIHTSVNAGKPFLGVCVGMQLLFEEMEEGPTTGLGLLQGTVRKLPETVKVPQIGWNTVRFRDDSPLAHLDGAYFYFVHSFAPQATHTEDIAGETDYGTRFTSVVMRDNVWGTQFHPEKSGEDGLDLIRTWAAW 495
            P EV AADRVV PG G+A  AM  L   GL  A+  +  AGKP LGVC+GMQLLF + EEGPTTGLGLL G VR LP   KVPQ+GWN   FR  +P++ ++ A+FYFVHS+        DIA +TDYG RF S+V RD VWG QFHPEKSG+DGL L++TW  W
Sbjct:   32 PGEVAAADRVVLPGVGNAAAAMSRLRESGLAGAVSDAAKAGKPVLGVCLGMQLLFGDQEEGPTTGLGLLPGAVRSLPAGHKVPQMGWNLADFRAGTPMSSINQAWFYFVHSYIVHPEDESDIAADTDYGVRFPSIVARDAVWGFQFHPEKSGDDGLALVKTWVDW 196          
BLAST of mRNA_P-wetherbeei_contig52061.1.1 vs. uniprot
Match: A0A7W0PNQ0_9CHLR (Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0PNQ0_9CHLR)

HSP 1 Score: 202 bits (514), Expect = 2.750e-63
Identity = 93/165 (56.36%), Postives = 115/165 (69.70%), Query Frame = 1
Query:    1 PDEVVAADRVVFPGDGHARTAMDTLHARGLVEAIHTSVNAGKPFLGVCVGMQLLFEEMEEGPTTGLGLLQGTVRKLPETVKVPQIGWNTVRFRDDSPLAHLDGAYFYFVHSFAPQATHTEDIAGETDYGTRFTSVVMRDNVWGTQFHPEKSGEDGLDLIRTWAAW 495
            PD+V AADRVV PG G+A  AM  L   GL +A+  +    KP LGVC+GMQLLF + EEGPTTGLGLL GTV  LP  +KVPQ+GWN   FR  +P+++L  AYFYFVHS+     +   +A ET+YG RF S+V  + VWG QFHPEKSG+DGL L++TW  W
Sbjct:   32 PDDVRAADRVVLPGVGNAAAAMTRLRESGLADAVTGAAETKKPVLGVCLGMQLLFGDQEEGPTTGLGLLPGTVHALPNELKVPQMGWNMAEFRSGTPMSNLRAAYFYFVHSYIVHPENDAHVAAETNYGVRFPSIVAHNAVWGFQFHPEKSGDDGLALVKTWVDW 196          
BLAST of mRNA_P-wetherbeei_contig52061.1.1 vs. uniprot
Match: A0A7V9VIN6_9CHLR (Imidazole glycerol phosphate synthase subunit HisH n=2 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VIN6_9CHLR)

HSP 1 Score: 201 bits (511), Expect = 9.190e-63
Identity = 95/162 (58.64%), Postives = 115/162 (70.99%), Query Frame = 1
Query:    1 PDEVVAADRVVFPGDGHARTAMDTLHARGLVEAIHTSVNAGKPFLGVCVGMQLLFEEMEEGPTTGLGLLQGTVRKLPETVKVPQIGWNTVRFRDDSPLAHLDGAYFYFVHSFAPQATHTEDIAGETDYGTRFTSVVMRDNVWGTQFHPEKSGEDGLDLIRTW 486
            PD++  AD +VFPG G+AR AMD L A G+ +AI +SVN GKP LGVC+GMQLLF   EEGPTTGLGLLQG    LP T K P +GWNTV F+  + L+HLD   +YFVHS+  +     DIAG T YG  F S+V RD++WGTQFHPEKSG+ G+ LI  W
Sbjct:   32 PDQIAKADGLVFPGVGNARMAMDRLRASGISDAITSSVNKGKPILGVCLGMQLLFGAQEEGPTTGLGLLQGHGVALPATRKTPHMGWNTVNFQQHNVLSHLDAGEYYFVHSYIVEPDDARDIAGITSYGVTFPSIVSRDHIWGTQFHPEKSGDLGIALIGEW 193          
BLAST of mRNA_P-wetherbeei_contig52061.1.1 vs. uniprot
Match: A0A7V8WQJ7_9CHLR (Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8WQJ7_9CHLR)

HSP 1 Score: 186 bits (471), Expect = 1.260e-56
Identity = 93/171 (54.39%), Postives = 107/171 (62.57%), Query Frame = 1
Query:    1 PDEVVAADRVVFPGDGHARTAMDTLHARGLVEAIHTSVNAGKPFLGVCVGMQLLFEEMEEGPTTGLGLLQGTVRKLPETVKVPQIGWNTVRFRDDSPLAHL-DGAYFYFVHSFAPQATHTEDIAGETDYGTRFTSVVMRDNVWGTQFHPEKSGEDGLDLIRTWAAWGGERS 510
            P  V  A RVV PG G A  AM+ L   G+  A+     +G+P LG+C+GMQLLF+  EEGPT GL LL G VR LP   KVP +GWN V FR  SPL    DG YFYFVHS+        DIA  T YG  F SV++RDN+WGTQFHPEKSGE GL LIR W   G + S
Sbjct:   32 PARVRGAQRVVLPGVGAAGAAMERLSESGMDGAVKEVAESGRPLLGICLGMQLLFDHQEEGPTRGLNLLGGEVRALPPERKVPHMGWNRVEFRSPSPLGSAGDGPYFYFVHSYYAHVERPSDIAAVTSYGLSFPSVIVRDNIWGTQFHPEKSGEGGLALIRAWLRSGEDDS 202          
BLAST of mRNA_P-wetherbeei_contig52061.1.1 vs. uniprot
Match: A0A6J4UQK7_9CHLR (Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4UQK7_9CHLR)

HSP 1 Score: 174 bits (441), Expect = 5.990e-52
Identity = 92/171 (53.80%), Postives = 111/171 (64.91%), Query Frame = 1
Query:    1 PDEVVAADRVVFPGDGHARTAMDTLHARGLVEAIHTSVNAGKPFLGVCVGMQLLFEEMEEGPTTGLGLLQGTVRKL-PETV-KVPQIGWNTVRFRDDSPL-AHLDGAYFYFVHSFAPQATHTEDIAGETDYGTRFTSVVMRDNVWGTQFHPEKSGEDGLDLIRTWAAWGGE 504
            P  V  AD VV PG G A  AMD L+  G+   +  +V AGKPFLG+C+GMQ+LFE  EEG + GLGLL+G VR L P+   KVP IGWN  R     PL A  D  ++YFVHS+  +     D+A ETDYG  F SVV+R+N+WGTQFHPEKSG DGL LI  + A  GE
Sbjct:   32 PAVVAQADAVVLPGVGAAAHAMDRLNELGMTPVVRDAVAAGKPFLGICLGMQILFEHQEEGDSHGLGLLRGRVRSLVPDAATKVPHIGWNRSRVVAPGPLGAAGDERHYYFVHSYVVEPDDPADVAAETDYGVPFPSVVVRNNIWGTQFHPEKSGPDGLALIAAFVAVAGE 202          
BLAST of mRNA_P-wetherbeei_contig52061.1.1 vs. uniprot
Match: A0A7C6ERZ0_9BACT (Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C6ERZ0_9BACT)

HSP 1 Score: 168 bits (426), Expect = 6.280e-50
Identity = 81/165 (49.09%), Postives = 111/165 (67.27%), Query Frame = 1
Query:    1 PDEVVAADRVVFPGDGHARTAMDTLHARGLVEAIHTSVNAGKPFLGVCVGMQLLFEEMEEGPTT-GLGLLQGTVRKLPETVKVPQIGWNTVRFRDDSPL--AHLDGAYFYFVHSFAPQATHTEDIAGETDYGTRFTSVVMRDNVWGTQFHPEKSGEDGLDLIRTW 486
            P+ V  A+RVV PG G    AM+ L + GL EA+  ++ AGKPFLG+C+G+QLLFE+ EE P   GLGLL+G+VR+LPE VKVP +GWN V FR+   +  +  +G+YFYF HS+  +    + + G+T+YG  F S V  +NVW  QFHPEKS + GL  +R +
Sbjct:   32 PEAVRRAERVVLPGVGAFGEAMERLRSSGLDEAVMAAIRAGKPFLGICLGLQLLFEQSEESPRARGLGLLRGSVRRLPEAVKVPHLGWNIVAFREGERMFGSIPEGSYFYFAHSYYAEPADPKLVTGQTEYGISFASAVRMENVWAVQFHPEKSQKWGLQFLRNF 196          
BLAST of mRNA_P-wetherbeei_contig52061.1.1 vs. uniprot
Match: A0A7W0TXR0_9CHLR (Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0TXR0_9CHLR)

HSP 1 Score: 168 bits (426), Expect = 1.330e-49
Identity = 87/163 (53.37%), Postives = 101/163 (61.96%), Query Frame = 1
Query:    1 PDEVVAADRVVFPGDGHARTAMDTLHARGLVEAIHTSVNAGKPFLGVCVGMQLLFEEMEEGPTTGLGLLQGTVRKLPETVKVPQIGWNTVRFRDDSPLAHLDGAY-FYFVHSFAPQATHTEDIAGETDYGTRFTSVVMRDNVWGTQFHPEKSGEDGLDLIRTW 486
            P  V  AD VV PG G A  +M+ L    LV  +H ++ AGKPFLGVC+GMQLL+   EEG T GLG+L G VR L   VKVPQIGWN VR   D PL      Y  YFVHSF  +     D+   + YG  F SVV R  VWGTQFHPEKSG+ GL ++RTW
Sbjct:   38 PLAVRTADGVVLPGVGAAGASMERLRESALVAPLHAALAAGKPFLGVCLGMQLLYGHQEEGDTEGLGVLPGRVRSLGPGVKVPQIGWNRVRLVADGPLGRAGDDYDAYFVHSFIAEGVDPVDVVALSRYGEVFPSVVARGAVWGTQFHPEKSGDAGLGIVRTW 200          
BLAST of mRNA_P-wetherbeei_contig52061.1.1 vs. uniprot
Match: A0A101G9J7_9FIRM (Imidazole glycerol phosphate synthase subunit HisH n=2 Tax=unclassified Desulfotomaculum TaxID=2632609 RepID=A0A101G9J7_9FIRM)

HSP 1 Score: 166 bits (419), Expect = 1.480e-48
Identity = 81/156 (51.92%), Postives = 110/156 (70.51%), Query Frame = 1
Query:   28 VVFPGDGHARTAMDTLHARGLVEAIHTSVNAGKPFLGVCVGMQLLFEEMEE-GPTTGLGLLQGTVRKLPETVKVPQIGWNTVRFRDDSPLAH--LDGAYFYFVHSFAPQATHTEDIAGETDYGTRFTSVVMRDNVWGTQFHPEKSGEDGLDLIRTW 486
            +V PG G    A++ L   GL EAI + ++AGKPFLG+C+G+QLLFE  EE G T G+G+L G V+KLP+++KVP +GWN V F+ +SPL     DG+YFYFVHSF  +A   + IAG T+YG  F S+V RD+V+G QFHPEKS   GL +++ +
Sbjct:   55 IVLPGVGAFARAVENLKRTGLFEAIISEISAGKPFLGICLGLQLLFEVSEEWGLTDGMGILPGRVKKLPDSIKVPHMGWNQVFFKKESPLMEGITDGSYFYFVHSFYVEAKIPDQIAGITEYGLNFASMVQRDSVFGIQFHPEKSSALGLRILKNF 210          
BLAST of mRNA_P-wetherbeei_contig52061.1.1 vs. uniprot
Match: A0A3A6NA33_9FIRM (Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Candidatus Desulforudis sp. TaxID=2093368 RepID=A0A3A6NA33_9FIRM)

HSP 1 Score: 164 bits (416), Expect = 2.610e-48
Identity = 83/168 (49.40%), Postives = 109/168 (64.88%), Query Frame = 1
Query:    1 PDEVVAADRVVFPGDGHARTAMDTLHARGLVEAIHTSVNAGKPFLGVCVGMQLLFEEMEE-GPTTGLGLLQGTVRKLPETVKVPQIGWNTVRFRDDSPLAH--LDGAYFYFVHSFAPQATHTEDIAGETDYGTRFTSVVMRDNVWGTQFHPEKSGEDGLDLIRTWAAW 495
            P+ V  AD V+ PG G    AM  L   G+V+AI+ +++ GKPFLG+C+G QLLFE  EE G TTGLG+  GTVR+LP  + VP +GWN +  R   PL     +GA FYFVHS+    +  E I  ET+YG RF SVV R+NV+G QFHPEKS + GL+++  +  W
Sbjct:   36 PEGVDRADGVILPGVGAFADAMRNLREAGMVDAIYRAIDEGKPFLGICLGQQLLFEHSEEFGLTTGLGVFPGTVRRLPPGLIVPHMGWNEIEIRQPVPLLDGVTEGARFYFVHSYFVAPSTPEVIVAETEYGIRFASVVGRENVFGIQFHPEKSSKLGLNILNNFGKW 203          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52061.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W0KGH2_9CHLR1.320e-6860.61Imidazole glycerol phosphate synthase subunit HisH... [more]
A0A838GHF9_9CHLR4.130e-6558.79Imidazole glycerol phosphate synthase subunit HisH... [more]
A0A7W0PNQ0_9CHLR2.750e-6356.36Imidazole glycerol phosphate synthase subunit HisH... [more]
A0A7V9VIN6_9CHLR9.190e-6358.64Imidazole glycerol phosphate synthase subunit HisH... [more]
A0A7V8WQJ7_9CHLR1.260e-5654.39Imidazole glycerol phosphate synthase subunit HisH... [more]
A0A6J4UQK7_9CHLR5.990e-5253.80Imidazole glycerol phosphate synthase subunit HisH... [more]
A0A7C6ERZ0_9BACT6.280e-5049.09Imidazole glycerol phosphate synthase subunit HisH... [more]
A0A7W0TXR0_9CHLR1.330e-4953.37Imidazole glycerol phosphate synthase subunit HisH... [more]
A0A101G9J7_9FIRM1.480e-4851.92Imidazole glycerol phosphate synthase subunit HisH... [more]
A0A3A6NA33_9FIRM2.610e-4849.40Imidazole glycerol phosphate synthase subunit HisH... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52061contigP-wetherbeei_contig52061:24..548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog477974.Daud_1624
Preferred namehisH
PFAMsGATase
Model size525
Max annot lvl186801|Clostridia
KEGG rclassRC00010,RC01190,RC01943
KEGG koko:K02501
KEGG ReactionR04558
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.26e-48
EggNOG OGsCOG0118@1|root,COG0118@2|Bacteria,1TQT0@1239|Firmicutes,248SH@186801|Clostridia,260M0@186807|Peptococcaceae
DescriptionIGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
Cds size525
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186780.8755383-CDS-P-wetherbeei_contig52061:23..5481683186780.8755383-CDS-P-wetherbeei_contig52061:23..548Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52061 24..548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52061.1.1prot_P-wetherbeei_contig52061.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52061 24..548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52061.1.1

>prot_P-wetherbeei_contig52061.1.1 ID=prot_P-wetherbeei_contig52061.1.1|Name=mRNA_P-wetherbeei_contig52061.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
PDEVVAADRVVFPGDGHARTAMDTLHARGLVEAIHTSVNAGKPFLGVCVG
MQLLFEEMEEGPTTGLGLLQGTVRKLPETVKVPQIGWNTVRFRDDSPLAH
LDGAYFYFVHSFAPQATHTEDIAGETDYGTRFTSVVMRDNVWGTQFHPEK
SGEDGLDLIRTWAAWGGERSRGEK*
back to top

mRNA from alignment at P-wetherbeei_contig52061:24..548-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52061.1.1 ID=mRNA_P-wetherbeei_contig52061.1.1|Name=mRNA_P-wetherbeei_contig52061.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig52061:24..548- (Phaeothamnion wetherbeei SAG_119_79)
CCCGACGAAGTCGTCGCGGCGGATCGCGTCGTCTTCCCCGGCGATGGCCA CGCCAGGACCGCGATGGACACCCTCCACGCCCGCGGCCTCGTCGAGGCCA TCCATACCAGCGTGAATGCCGGCAAACCATTCCTCGGCGTCTGCGTCGGC ATGCAACTTCTGTTCGAGGAGATGGAGGAAGGCCCGACCACCGGCCTCGG ACTCCTTCAAGGCACCGTTCGCAAGCTGCCAGAGACCGTGAAGGTCCCGC AGATCGGCTGGAACACCGTCCGCTTCCGCGACGATTCCCCCCTCGCCCAC CTCGACGGCGCCTACTTCTACTTCGTCCACTCCTTCGCCCCCCAGGCCAC CCACACCGAGGACATCGCGGGGGAGACCGACTACGGCACCCGCTTCACCA GTGTGGTGATGCGCGACAACGTCTGGGGCACGCAGTTCCACCCCGAGAAG AGCGGCGAGGATGGGCTCGACCTGATCCGCACCTGGGCCGCCTGGGGAGG GGAGAGGTCGAGAGGGGAGAAGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig52061:24..548-

>mRNA_P-wetherbeei_contig52061.1.1 ID=mRNA_P-wetherbeei_contig52061.1.1|Name=mRNA_P-wetherbeei_contig52061.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig52061:24..548- (Phaeothamnion wetherbeei SAG_119_79)
CCCGACGAAGTCGTCGCGGCGGATCGCGTCGTCTTCCCCGGCGATGGCCA
CGCCAGGACCGCGATGGACACCCTCCACGCCCGCGGCCTCGTCGAGGCCA
TCCATACCAGCGTGAATGCCGGCAAACCATTCCTCGGCGTCTGCGTCGGC
ATGCAACTTCTGTTCGAGGAGATGGAGGAAGGCCCGACCACCGGCCTCGG
ACTCCTTCAAGGCACCGTTCGCAAGCTGCCAGAGACCGTGAAGGTCCCGC
AGATCGGCTGGAACACCGTCCGCTTCCGCGACGATTCCCCCCTCGCCCAC
CTCGACGGCGCCTACTTCTACTTCGTCCACTCCTTCGCCCCCCAGGCCAC
CCACACCGAGGACATCGCGGGGGAGACCGACTACGGCACCCGCTTCACCA
GTGTGGTGATGCGCGACAACGTCTGGGGCACGCAGTTCCACCCCGAGAAG
AGCGGCGAGGATGGGCTCGACCTGATCCGCACCTGGGCCGCCTGGGGAGG
GGAGAGGTCGAGAGGGGAGAAGTGA
back to top