mRNA_P-wetherbeei_contig52055.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52055.1.1
Unique NamemRNA_P-wetherbeei_contig52055.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52055.1.1 vs. uniprot
Match: A0A7C6VM62_9RHOO (MBL fold metallo-hydrolase n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A7C6VM62_9RHOO)

HSP 1 Score: 207 bits (526), Expect = 1.740e-63
Identity = 102/173 (58.96%), Postives = 131/173 (75.72%), Query Frame = 1
Query:   13 VADGVYAFIGDTGELSAANHGFVGNSGFIVGPSGVVVIDTGTSYKHGRLILDAIARLTDKPVELVIITHAVQEFLFGNAAFDERGVPILAHRETTNLMKARCDHCLENLKPVLG-DELAGTRLVLPQREIDATTTITAGGRRLKLYYLGWASTPGDVIVLDLDSGVMFAGGMV 528
            VA GV+ F+GDTGE S +N G VGN GF+VG SG V+I+ G SY+HGR +L A  R+  +PV LV+IT  VQEF+ G AAF +RG+P+LAHR +  L+ ARC++CL NL+ VLG DELAG+R+ +P + I+ TTTI  GGRRL L + GWASTPGD++V DL SGVMFAG +V
Sbjct:   36 VAAGVHVFVGDTGEPSPSNRGRVGNIGFVVGDSGTVMINAGASYRHGRALLAAAERIGGRPVVLVVITQPVQEFVMGAAAFADRGIPVLAHRASAELIAARCENCLHNLRSVLGEDELAGSRVQVPDQLIEGTTTIEPGGRRLALIHPGWASTPGDIVVRDLQSGVMFAGALV 208          
BLAST of mRNA_P-wetherbeei_contig52055.1.1 vs. uniprot
Match: A0A069PDS3_9BURK (Lactamase_B domain-containing protein n=3 Tax=Caballeronia TaxID=1827195 RepID=A0A069PDS3_9BURK)

HSP 1 Score: 202 bits (515), Expect = 5.330e-62
Identity = 101/176 (57.39%), Postives = 129/176 (73.30%), Query Frame = 1
Query:    4 PQKVADGVYAFIGDTGELSAANHGFVGNSGFIVGPSGVVVIDTGTSYKHGRLILDAIARLTDKPVELVIITHAVQEFLFGNAAFDERGVPILAHRETTNLMKARCDHCLENLKPVLG-DELAGTRLVLPQREIDATTTITAGGRRLKLYYLGWASTPGDVIVLDLDSGVMFAGGMV 528
            P  +A GVYAFIG    ++ ANHG VGN+GFIVGPSGV VIDTG SY++GR +++AI ++T  PV LVIITH   EF+FG  AF +R VPILAH  T  L++ RC  CL NL+  LG DE+AG+R+ +P R ID TT I +GGR+L+L + G ASTPGD+ VLD  +GV+FAG +V
Sbjct:   26 PVAIAPGVYAFIGTGDAVAPANHGIVGNNGFIVGPSGVTVIDTGPSYRYGRAMIEAIRKVTPLPVRLVIITHQAPEFVFGAGAFRDRDVPILAHVRTAQLIRERCSICLANLRKTLGEDEMAGSRVTVPDRTIDGTTEIDSGGRKLQLLHFGPASTPGDLAVLDTQTGVLFAGSLV 201          
BLAST of mRNA_P-wetherbeei_contig52055.1.1 vs. uniprot
Match: A0A1L6I902_9BURK (MBL fold metallo-hydrolase n=4 Tax=Paraburkholderia TaxID=1822464 RepID=A0A1L6I902_9BURK)

HSP 1 Score: 201 bits (511), Expect = 2.770e-61
Identity = 96/177 (54.24%), Postives = 131/177 (74.01%), Query Frame = 1
Query:    1 QPQKVADGVYAFIGDTGELSAANHGFVGNSGFIVGPSGVVVIDTGTSYKHGRLILDAIARLTDKPVELVIITHAVQEFLFGNAAFDERGVPILAHRETTNLMKARCDHCLENLKPVLG-DELAGTRLVLPQREIDATTTITAGGRRLKLYYLGWASTPGDVIVLDLDSGVMFAGGMV 528
            +P ++A GVY  +G    ++ ANHG V N+GF+VGPSGV VIDTG+SY++GR +LDAI ++T  PV+LV+ITH   EF+FG +AF +RGVPIL+ R T  L++ RC  CL+NL   LG DE+AG+R+ +P R +D  T + +GGR L+L Y G ASTPGD+ VLD  +GV+FAGG+V
Sbjct:   28 EPNEIASGVYVMMGSGEAVTLANHGIVANNGFVVGPSGVTVIDTGSSYRYGRAMLDAIHKITPLPVQLVVITHQGPEFVFGASAFRDRGVPILSQRRTAELIRERCAICLKNLNRTLGADEMAGSRVTVPDRTVDGNTQLESGGRTLRLLYFGPASTPGDLAVLDTSTGVLFAGGLV 204          
BLAST of mRNA_P-wetherbeei_contig52055.1.1 vs. uniprot
Match: UPI001FD2463F (MBL fold metallo-hydrolase n=1 Tax=Caballeronia sp. TF1N1 TaxID=2878153 RepID=UPI001FD2463F)

HSP 1 Score: 200 bits (508), Expect = 6.070e-61
Identity = 99/176 (56.25%), Postives = 129/176 (73.30%), Query Frame = 1
Query:    4 PQKVADGVYAFIGDTGELSAANHGFVGNSGFIVGPSGVVVIDTGTSYKHGRLILDAIARLTDKPVELVIITHAVQEFLFGNAAFDERGVPILAHRETTNLMKARCDHCLENLKPVLG-DELAGTRLVLPQREIDATTTITAGGRRLKLYYLGWASTPGDVIVLDLDSGVMFAGGMV 528
            P  VA GVYAFIGD   ++ ANHG V N+GFIVGPSGV VIDTG SY++GR +++AI ++T  PV LVIITH   EF+FG AAF ++GVPILAH  T  L++ RC  CL NL+  LG DE+AG+R+ +P R ++ TT +  G R+L+L + G ASTPGD+ VLD  SGV+FAG ++
Sbjct:   26 PVAVAPGVYAFIGDGDAVAPANHGMVANNGFIVGPSGVTVIDTGASYRYGRAMIEAIRKVTPLPVTLVIITHQGPEFVFGAAAFRDQGVPILAHYRTAQLIRERCPICLANLRKTLGEDEMAGSRVTVPDRTVEGTTEVVNGDRKLQLLHFGPASTPGDLAVLDTQSGVLFAGSLI 201          
BLAST of mRNA_P-wetherbeei_contig52055.1.1 vs. uniprot
Match: A0A656QE51_9BURK (Lactamase_B domain-containing protein n=10 Tax=Caballeronia TaxID=1827195 RepID=A0A656QE51_9BURK)

HSP 1 Score: 200 bits (508), Expect = 7.000e-61
Identity = 97/176 (55.11%), Postives = 130/176 (73.86%), Query Frame = 1
Query:    4 PQKVADGVYAFIGDTGELSAANHGFVGNSGFIVGPSGVVVIDTGTSYKHGRLILDAIARLTDKPVELVIITHAVQEFLFGNAAFDERGVPILAHRETTNLMKARCDHCLENLKPVLG-DELAGTRLVLPQREIDATTTITAGGRRLKLYYLGWASTPGDVIVLDLDSGVMFAGGMV 528
            P  +A GVYAFIGD   ++ ANHG V N+GFIVG  GV VIDTG+SY++GR +++AI ++T  PV+LVIITH   EF+FG AAF + GVPILAH     L++ RC  CL NL+  LG DE+AG+R+ +P + ++ TT I +GGR+L+L + G ASTPGD+ VLD  +GV+FAGG+V
Sbjct:   31 PVAIAPGVYAFIGDNDAVAPANHGIVANNGFIVGQDGVTVIDTGSSYRYGRAMIEAIRKVTPLPVKLVIITHQAPEFVFGAAAFRDEGVPILAHARAAQLIRERCSICLANLRKTLGEDEMAGSRVTVPDQTVNGTTEIESGGRKLQLLHFGPASTPGDLAVLDTQTGVLFAGGLV 206          
BLAST of mRNA_P-wetherbeei_contig52055.1.1 vs. uniprot
Match: A0A158EW83_9BURK (Beta-lactamase domain-containing protein n=2 Tax=Caballeronia TaxID=1827195 RepID=A0A158EW83_9BURK)

HSP 1 Score: 199 bits (507), Expect = 9.910e-61
Identity = 96/176 (54.55%), Postives = 132/176 (75.00%), Query Frame = 1
Query:    4 PQKVADGVYAFIGDTGELSAANHGFVGNSGFIVGPSGVVVIDTGTSYKHGRLILDAIARLTDKPVELVIITHAVQEFLFGNAAFDERGVPILAHRETTNLMKARCDHCLENLKPVLGDE-LAGTRLVLPQREIDATTTITAGGRRLKLYYLGWASTPGDVIVLDLDSGVMFAGGMV 528
            PQ++A GVYA +GD   ++ AN G V N+GFIVG SGV V+DTG+SY++GR +++AI  +T  PVELV+ITH   EF+FG +AF +RGVPILAHR    L++ RC  CL+NL+  LGDE ++G+R+ +P R +DA+T I +GGR L+L + G ASTPGD+ VLD  +G +FAGG+V
Sbjct:   30 PQQIAPGVYAMLGDADAVAPANRGIVANNGFIVGKSGVTVVDTGSSYRYGRAMIEAIRAVTPLPVELVVITHQAPEFVFGASAFRDRGVPILAHRRAAELIRERCAICLKNLQRTLGDEEMSGSRVTVPDRTVDASTRIESGGRELQLLHFGPASTPGDLAVLDTATGAVFAGGLV 205          
BLAST of mRNA_P-wetherbeei_contig52055.1.1 vs. uniprot
Match: A0A1M6SMB0_9BURK (Glyoxylase, beta-lactamase superfamily II n=3 Tax=Paraburkholderia terricola TaxID=169427 RepID=A0A1M6SMB0_9BURK)

HSP 1 Score: 200 bits (509), Expect = 1.150e-60
Identity = 96/177 (54.24%), Postives = 133/177 (75.14%), Query Frame = 1
Query:    1 QPQKVADGVYAFIGDTGELSAANHGFVGNSGFIVGPSGVVVIDTGTSYKHGRLILDAIARLTDKPVELVIITHAVQEFLFGNAAFDERGVPILAHRETTNLMKARCDHCLENLKPVLG-DELAGTRLVLPQREIDATTTITAGGRRLKLYYLGWASTPGDVIVLDLDSGVMFAGGMV 528
            +P ++A GVYA +G+   ++  NHG V N+GF+VGPSGVVVIDTG+SY++GR +++AI R+T  P+ELVI+TH   EF+FG AAF + GVPILAHR T  L+ ARC  CL+NL+  LG DE+AG+R+ +P R +D +T +  GGR L+L Y G A+TPGD+ V D+ +GV+FAG +V
Sbjct:   59 KPVELAPGVYAMLGNGDAVAPRNHGIVANNGFLVGPSGVVVIDTGSSYRYGRAMIEAIHRVTPLPIELVILTHQAPEFVFGAAAFRDAGVPILAHRRTAELIAARCAICLKNLRRTLGEDEMAGSRVTVPDRTVDDSTRLQVGGRELELLYFGTAATPGDLAVRDVQTGVLFAGALV 235          
BLAST of mRNA_P-wetherbeei_contig52055.1.1 vs. uniprot
Match: A0A6J5DDV0_9BURK (Lactamase_B domain-containing protein n=2 Tax=Paraburkholderia solisilvae TaxID=624376 RepID=A0A6J5DDV0_9BURK)

HSP 1 Score: 200 bits (509), Expect = 2.940e-60
Identity = 100/176 (56.82%), Postives = 129/176 (73.30%), Query Frame = 1
Query:    4 PQKVADGVYAFIGDTGELSAANHGFVGNSGFIVGPSGVVVIDTGTSYKHGRLILDAIARLTDKPVELVIITHAVQEFLFGNAAFDERGVPILAHRETTNLMKARCDHCLENLKPVLG-DELAGTRLVLPQREIDATTTITAGGRRLKLYYLGWASTPGDVIVLDLDSGVMFAGGMV 528
            P ++A GVY   G    ++ ANHG V N+GFIVGPSGV VIDTG+SY++GR +LDAI  +T  PVELV+ITH   EF+FG +AF +RGVPILA R T  L++ RC  CL+NL   LG DE+AG+R+ +P R +D  T I +GGR+L+L Y G ASTPGD+ VLD  +GV+FAGG+V
Sbjct:   90 PVEIAPGVYVMFGSGDAVTPANHGIVANNGFIVGPSGVTVIDTGSSYRYGRAMLDAIHNVTRLPVELVVITHQGPEFVFGASAFRDRGVPILAQRRTAELIRERCAICLKNLIRTLGEDEMAGSRVTVPDRTVDGATEIDSGGRKLRLLYFGPASTPGDLAVLDPSTGVLFAGGLV 265          
BLAST of mRNA_P-wetherbeei_contig52055.1.1 vs. uniprot
Match: A0A158E4Q5_9BURK (Oxidoreductase n=1 Tax=Caballeronia ptereochthonis TaxID=1777144 RepID=A0A158E4Q5_9BURK)

HSP 1 Score: 198 bits (503), Expect = 4.090e-60
Identity = 97/176 (55.11%), Postives = 130/176 (73.86%), Query Frame = 1
Query:    4 PQKVADGVYAFIGDTGELSAANHGFVGNSGFIVGPSGVVVIDTGTSYKHGRLILDAIARLTDKPVELVIITHAVQEFLFGNAAFDERGVPILAHRETTNLMKARCDHCLENLKPVLGD-ELAGTRLVLPQREIDATTTITAGGRRLKLYYLGWASTPGDVIVLDLDSGVMFAGGMV 528
            P  +A GVYAFIG+   ++ ANHG V N+GFIVGP GV VIDTG SY++GR +++AI ++T  PV+LVIITH   EF+FG AAF +  VPILAH  T  L++ RC  CL NL+  LGD E+AG+R+ +P + ++ TT + +GGR+L+L + G ASTPGD+ VLD  SGV+FAGG+V
Sbjct:   31 PVAIAPGVYAFIGNGEAVAPANHGIVANNGFIVGPEGVTVIDTGPSYRYGRAMIEAIRKVTPLPVKLVIITHQAPEFVFGAAAFRDDDVPILAHARTAQLIRERCSICLANLRKTLGDDEMAGSRVTVPDKTVNGTTEMESGGRKLQLLHFGPASTPGDLAVLDTQSGVLFAGGLV 206          
BLAST of mRNA_P-wetherbeei_contig52055.1.1 vs. uniprot
Match: R4X190_9BURK (Lactamase_B domain-containing protein n=2 Tax=Caballeronia insecticola TaxID=758793 RepID=R4X190_9BURK)

HSP 1 Score: 197 bits (502), Expect = 4.100e-60
Identity = 96/176 (54.55%), Postives = 129/176 (73.30%), Query Frame = 1
Query:    4 PQKVADGVYAFIGDTGELSAANHGFVGNSGFIVGPSGVVVIDTGTSYKHGRLILDAIARLTDKPVELVIITHAVQEFLFGNAAFDERGVPILAHRETTNLMKARCDHCLENLKPVLG-DELAGTRLVLPQREIDATTTITAGGRRLKLYYLGWASTPGDVIVLDLDSGVMFAGGMV 528
            P  +A GVYA IGD   ++ ANHG V N+GFIVG  GV VIDTG+SY++GR +++AI ++T  PV+LVIITH   EF+FG AAF + GVPILAH     L++ RC  CL NL+  LG DE+AG+R+ +P + I+ TT I +GGR+L+L + G ASTPGD+ +LD  +GV+FAGG+V
Sbjct:   20 PVAIAPGVYALIGDNDAVAPANHGIVANNGFIVGTDGVTVIDTGSSYRYGRAMIEAIRKVTPLPVKLVIITHQAPEFVFGAAAFRDEGVPILAHARAAQLIRERCSICLANLRKTLGEDEMAGSRVTVPDQTINGTTEIESGGRKLQLLHFGPASTPGDLAILDTQTGVLFAGGLV 195          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52055.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C6VM62_9RHOO1.740e-6358.96MBL fold metallo-hydrolase n=1 Tax=Rhodocyclaceae ... [more]
A0A069PDS3_9BURK5.330e-6257.39Lactamase_B domain-containing protein n=3 Tax=Caba... [more]
A0A1L6I902_9BURK2.770e-6154.24MBL fold metallo-hydrolase n=4 Tax=Paraburkholderi... [more]
UPI001FD2463F6.070e-6156.25MBL fold metallo-hydrolase n=1 Tax=Caballeronia sp... [more]
A0A656QE51_9BURK7.000e-6155.11Lactamase_B domain-containing protein n=10 Tax=Cab... [more]
A0A158EW83_9BURK9.910e-6154.55Beta-lactamase domain-containing protein n=2 Tax=C... [more]
A0A1M6SMB0_9BURK1.150e-6054.24Glyoxylase, beta-lactamase superfamily II n=3 Tax=... [more]
A0A6J5DDV0_9BURK2.940e-6056.82Lactamase_B domain-containing protein n=2 Tax=Para... [more]
A0A158E4Q5_9BURK4.090e-6055.11Oxidoreductase n=1 Tax=Caballeronia ptereochthonis... [more]
R4X190_9BURK4.100e-6054.55Lactamase_B domain-containing protein n=2 Tax=Caba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52055contigP-wetherbeei_contig52055:13..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1071679.BG57_30180
PFAMsLactamase_B
Model size528
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.73e-63
EggNOG OGsCOG0491@1|root,COG0491@2|Bacteria,1MX4H@1224|Proteobacteria,2VI82@28216|Betaproteobacteria,1K352@119060|Burkholderiaceae
DescriptionPFAM beta-lactamase domain protein
Cds size528
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186780.8120928-CDS-P-wetherbeei_contig52055:12..5401683186780.8120928-CDS-P-wetherbeei_contig52055:12..540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52055 13..540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52055.1.1prot_P-wetherbeei_contig52055.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52055 13..540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52055.1.1

>prot_P-wetherbeei_contig52055.1.1 ID=prot_P-wetherbeei_contig52055.1.1|Name=mRNA_P-wetherbeei_contig52055.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp
QPQKVADGVYAFIGDTGELSAANHGFVGNSGFIVGPSGVVVIDTGTSYKH
GRLILDAIARLTDKPVELVIITHAVQEFLFGNAAFDERGVPILAHRETTN
LMKARCDHCLENLKPVLGDELAGTRLVLPQREIDATTTITAGGRRLKLYY
LGWASTPGDVIVLDLDSGVMFAGGMV
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mRNA from alignment at P-wetherbeei_contig52055:13..540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52055.1.1 ID=mRNA_P-wetherbeei_contig52055.1.1|Name=mRNA_P-wetherbeei_contig52055.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig52055:13..540+ (Phaeothamnion wetherbeei SAG_119_79)
CAACCGCAGAAAGTCGCTGACGGCGTCTATGCCTTCATCGGCGACACCGG TGAGCTCTCGGCGGCCAACCATGGCTTCGTCGGCAATAGCGGGTTCATTG TCGGTCCAAGCGGCGTAGTCGTCATCGACACCGGCACGTCCTATAAGCAT GGCCGGCTCATTCTGGACGCGATTGCGCGCCTGACCGACAAGCCTGTCGA ACTGGTGATCATCACGCATGCCGTGCAGGAATTCCTGTTCGGCAATGCCG CGTTCGACGAGCGTGGCGTCCCGATCCTCGCGCACCGCGAAACGACGAAC CTGATGAAAGCGCGCTGCGACCATTGCCTGGAAAACCTGAAGCCGGTCCT GGGCGATGAGCTCGCGGGAACGCGGCTGGTTCTGCCGCAACGTGAAATCG ATGCCACCACCACTATCACGGCAGGCGGGCGCAGGCTCAAGCTCTACTAT CTGGGCTGGGCCAGCACGCCTGGCGATGTGATCGTCCTCGACCTGGACAG CGGGGTTATGTTCGCGGGCGGGATGGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52055:13..540+

>mRNA_P-wetherbeei_contig52055.1.1 ID=mRNA_P-wetherbeei_contig52055.1.1|Name=mRNA_P-wetherbeei_contig52055.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig52055:13..540+ (Phaeothamnion wetherbeei SAG_119_79)
CAACCGCAGAAAGTCGCTGACGGCGTCTATGCCTTCATCGGCGACACCGG
TGAGCTCTCGGCGGCCAACCATGGCTTCGTCGGCAATAGCGGGTTCATTG
TCGGTCCAAGCGGCGTAGTCGTCATCGACACCGGCACGTCCTATAAGCAT
GGCCGGCTCATTCTGGACGCGATTGCGCGCCTGACCGACAAGCCTGTCGA
ACTGGTGATCATCACGCATGCCGTGCAGGAATTCCTGTTCGGCAATGCCG
CGTTCGACGAGCGTGGCGTCCCGATCCTCGCGCACCGCGAAACGACGAAC
CTGATGAAAGCGCGCTGCGACCATTGCCTGGAAAACCTGAAGCCGGTCCT
GGGCGATGAGCTCGCGGGAACGCGGCTGGTTCTGCCGCAACGTGAAATCG
ATGCCACCACCACTATCACGGCAGGCGGGCGCAGGCTCAAGCTCTACTAT
CTGGGCTGGGCCAGCACGCCTGGCGATGTGATCGTCCTCGACCTGGACAG
CGGGGTTATGTTCGCGGGCGGGATGGTT
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