mRNA_P-wetherbeei_contig5205.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5205.2.1
Unique NamemRNA_P-wetherbeei_contig5205.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5205.2.1 vs. uniprot
Match: A0A3Q3B436_KRYMA (Reverse transcriptase domain-containing protein n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q3B436_KRYMA)

HSP 1 Score: 119 bits (299), Expect = 4.030e-28
Identity = 72/172 (41.86%), Postives = 100/172 (58.14%), Query Frame = 1
Query:    7 NYRLIALLNVDYKILANAWSQKLALWLPAAIGLDQTGFVPGRDIATNITLLRDLAAQSGAQASKNFSAAILFLAFAKAYETVEHDFLWRALEARGLPKSFVLNVQLLYRGASATLQINGRAAAPLLPGRGVRQGCLLSSPLFLLVLECLLDVLREDEGLKGVLLKGRPSRVV 522
            N+R ++LL  DYKIL+ A + +L   +   I  DQT  VPGR +  NI L+RD+   SG   S      ++ L   KA++ VEHDFLW+ +   G  +  +  +Q+LY GA + L+ING   AP   GRGVRQGC LS  L+ L LE LL  LR    ++G++L G  S +V
Sbjct:  553 NWRPVSLLCTDYKILSKALAARLGKAMEQVIHRDQTYCVPGRSMVDNIYLIRDVLEVSG---SLGLQTGLISLDQEKAFDRVEHDFLWKTMRGFGFSEGLIAKMQVLYSGAESLLKINGGLCAPFRVGRGVRQGCALSGMLYALSLEPLLQKLRSS--IRGLVLPGFSSNMV 719          
BLAST of mRNA_P-wetherbeei_contig5205.2.1 vs. uniprot
Match: A0A672HUD6_SALFA (Reverse transcriptase domain-containing protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672HUD6_SALFA)

HSP 1 Score: 115 bits (287), Expect = 7.590e-28
Identity = 69/166 (41.57%), Postives = 97/166 (58.43%), Query Frame = 1
Query:    7 NYRLIALLNVDYKILANAWSQKLALWLPAAIGLDQTGFVPGRDIATNITLLRDLAAQSGAQASKNFSAAILFLAFAKAYETVEHDFLWRALEARGLPKSFVLNVQLLYRGASATLQINGRAAAPLLPGRGVRQGCLLSSPLFLLVLECLLDVLREDEGLKGVLLKG 504
            N+R ++LL VDYK+L+   + +L   +   I  DQT  VPGR +  N+ L+RD+   S    S +  A ++ +   KA++ VEH FLWR +E+ G    F+  +Q+LYR   + L+ING   AP    RGVRQGC LS  L+ L LE LL  LR    L+G+LL G
Sbjct:   74 NWRPVSLLCVDYKLLSKVLASRLGRAMEQVIHRDQTYCVPGRSMVDNVHLIRDVLEVSS---SLDIDAGLISVDQEKAFDRVEHSFLWRVMESFGFSAGFIAKIQVLYRDIESVLKINGSLCAPFRVCRGVRQGCALSGMLYALSLEPLLSKLRSS--LQGLLLPG 234          
BLAST of mRNA_P-wetherbeei_contig5205.2.1 vs. uniprot
Match: A0A146I3T2_MYCCL (Uncharacterized protein n=2 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146I3T2_MYCCL)

HSP 1 Score: 115 bits (288), Expect = 1.300e-26
Identity = 73/173 (42.20%), Postives = 98/173 (56.65%), Query Frame = 1
Query:    7 NYRLIALLNVDYKILANAWSQKLALWLPAAIGLDQTGFVPGRDIATNITLLRDLAAQSGAQASKNFSAAILFLAFAKAYETVEHDFLWRALEARGLPKSFVLNVQLLYRGASATLQING-RAAAPLLPGRGVRQGCLLSSPLFLLVLECLLDVLREDEGLKGVLLKGRPSRVV 522
            NYR I+LLN DYKI   A + KLA   P  I  DQ GFVPGR I   + L + +   + A      + AI+ L   KAY+ +EHD+LWR L   G+P  F+  ++ LY  A   + +NG R+  P    RGVRQG  LS  LF L +E L + LR+ + LKG+ LK R  R++
Sbjct:  782 NYRPISLLNTDYKIFTKALTIKLAAVAPKLIHKDQAGFVPGRQIRDQVWLTKRIIELAEAT---EMNGAIVALDQEKAYDKIEHDYLWRVLAKFGIPNEFINTIKALYSDAQTFVMVNGERSRYPFRVTRGVRQGDPLSCLLFDLAIEPLAEALRKSD-LKGIQLKNRRERII 950          
BLAST of mRNA_P-wetherbeei_contig5205.2.1 vs. uniprot
Match: A0A665TRI9_ECHNA (Reverse transcriptase domain-containing protein n=1 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665TRI9_ECHNA)

HSP 1 Score: 112 bits (280), Expect = 1.350e-25
Identity = 68/172 (39.53%), Postives = 100/172 (58.14%), Query Frame = 1
Query:    7 NYRLIALLNVDYKILANAWSQKLALWLPAAIGLDQTGFVPGRDIATNITLLRDLAAQSGAQASKNFSAAILFLAFAKAYETVEHDFLWRALEARGLPKSFVLNVQLLYRGASATLQINGRAAAPLLPGRGVRQGCLLSSPLFLLVLECLLDVLREDEGLKGVLLKGRPSRVV 522
            N+R ++LL  DYK+LA A +++L   +   + +DQ+  VPGR I+ N+TL+R +   SG   S +    ++ +   KA++ VEH +LW+ L A G    F+  +Q+LYR  ++ L+ING  AAP    RGVRQGC LS  L+ L +E LL  LR   G  G+    R S  V
Sbjct:  523 NWRPVSLLCGDYKVLAKALARRLREVMAEVVHVDQSYCVPGRTISDNVTLIRHVLELSG---SLDMDTGLISIDQEKAFDRVEHRYLWQTLGAFGFGPGFIAGIQVLYRDVASILKINGGLAAPFSVQRGVRQGCPLSGMLYSLAIEPLLHRLRGGAGGSGLPWMSRSSEAV 691          
BLAST of mRNA_P-wetherbeei_contig5205.2.1 vs. uniprot
Match: A0A3Q2ZXK0_KRYMA (Reverse transcriptase domain-containing protein n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q2ZXK0_KRYMA)

HSP 1 Score: 111 bits (277), Expect = 3.670e-25
Identity = 67/172 (38.95%), Postives = 97/172 (56.40%), Query Frame = 1
Query:    7 NYRLIALLNVDYKILANAWSQKLALWLPAAIGLDQTGFVPGRDIATNITLLRDLAAQSGAQASKNFSAAILFLAFAKAYETVEHDFLWRALEARGLPKSFVLNVQLLYRGASATLQINGRAAAPLLPGRGVRQGCLLSSPLFLLVLECLLDVLREDEGLKGVLLKGRPSRVV 522
            N+R ++LL  DYKIL+ A + +L   +   I  DQT  VPGR +  N+ L+RD+   SG   S      ++ L   KA++ VEH FLW+ +   G  +  +  +Q+LY G  + L+ING   AP    RGVRQGC LS  L+ L LE LL  LR    ++G++L G  + +V
Sbjct:  209 NWRPVSLLCTDYKILSKALAARLGKAMEQVIHRDQTYCVPGRSMVDNVYLIRDVLEVSG---SLGLRTGLISLDQEKAFDRVEHGFLWKTMGGFGFSEGLIAKIQVLYSGVESLLKINGSLCAPFRVCRGVRQGCALSGMLYALSLEPLLQKLRSS--IRGLVLPGFSNNIV 375          
BLAST of mRNA_P-wetherbeei_contig5205.2.1 vs. uniprot
Match: A0A3Q3H443_9LABR (Reverse transcriptase domain-containing protein n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3H443_9LABR)

HSP 1 Score: 110 bits (275), Expect = 6.770e-25
Identity = 70/162 (43.21%), Postives = 96/162 (59.26%), Query Frame = 1
Query:    7 NYRLIALLNVDYKILANAWSQKLALWLPAAIGLDQTGFVPGRDIATNITLLRDLAAQSGAQASKNFSAAILFLAFAKAYETVEHDFLWRALEARGLPKSFVLNVQLLYRGASATLQINGRAAAPLLPGRGVRQGCLLSSPLFLLVLECLLDVLREDEGLKGV 492
            N+R ++LL  DYKIL+   + +L   + + I  DQT  VPGR I+ NITL+R +   SG+ A       ++ L   KA++ VEH +LWR L A G    F+  +Q+LYR  ++ L+ING  +AP    RGVRQGC LS  L+ L +E LL  LR   GL GV
Sbjct:  161 NWRPVSLLCTDYKILSKVLASRLRQVMGSIIHTDQTYCVPGRLISDNITLIRHVLEVSGSLA---VDTGLISLDQEKAFDRVEHQYLWRTLTAFGFNPCFLAKIQVLYRDIASVLKINGGLSAPFSVQRGVRQGCSLSGMLYSLAIEPLLHRLRS--GLSGV 317          
BLAST of mRNA_P-wetherbeei_contig5205.2.1 vs. uniprot
Match: A0A3Q3F5N5_9LABR (Reverse transcriptase domain-containing protein n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3F5N5_9LABR)

HSP 1 Score: 110 bits (275), Expect = 6.790e-25
Identity = 70/162 (43.21%), Postives = 96/162 (59.26%), Query Frame = 1
Query:    7 NYRLIALLNVDYKILANAWSQKLALWLPAAIGLDQTGFVPGRDIATNITLLRDLAAQSGAQASKNFSAAILFLAFAKAYETVEHDFLWRALEARGLPKSFVLNVQLLYRGASATLQINGRAAAPLLPGRGVRQGCLLSSPLFLLVLECLLDVLREDEGLKGV 492
            N+R ++LL  DYKIL+   + +L   + + I  DQT  VPGR I+ NITL+R +   SG+ A       ++ L   KA++ VEH +LWR L A G    F+  +Q+LYR  ++ L+ING  +AP    RGVRQGC LS  L+ L +E LL  LR   GL GV
Sbjct:  343 NWRPVSLLCTDYKILSKVLASRLRQVMGSIIHTDQTYCVPGRLISDNITLIRHVLEVSGSLA---VDTGLISLDQEKAFDRVEHQYLWRTLTAFGFNPCFLAKIQVLYRDIASVLKINGGLSAPFSVQRGVRQGCSLSGMLYSLAIEPLLHRLRS--GLSGV 499          
BLAST of mRNA_P-wetherbeei_contig5205.2.1 vs. uniprot
Match: A0A3Q3AE51_KRYMA (Reverse transcriptase domain-containing protein n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q3AE51_KRYMA)

HSP 1 Score: 109 bits (272), Expect = 9.080e-25
Identity = 67/172 (38.95%), Postives = 97/172 (56.40%), Query Frame = 1
Query:    7 NYRLIALLNVDYKILANAWSQKLALWLPAAIGLDQTGFVPGRDIATNITLLRDLAAQSGAQASKNFSAAILFLAFAKAYETVEHDFLWRALEARGLPKSFVLNVQLLYRGASATLQINGRAAAPLLPGRGVRQGCLLSSPLFLLVLECLLDVLREDEGLKGVLLKGRPSRVV 522
            N+R ++LL  DYKIL+ A + +L   +   I  DQT  VP R +  NI L+RD+   SG   S    A ++ L   KA++ VEHDFLW+ ++  G  +  +  +Q+LY    + L+ING   AP    RGVRQGC LS  L+ L LE LL  +R    + G++L G  + +V
Sbjct:   64 NWRPVSLLCTDYKILSKALATRLGKAMEQVIHRDQTYCVPSRSMVDNIYLIRDVLEVSG---SLGLQAGLISLDQEKAFDRVEHDFLWKTMKGFGFGEGLIAKIQVLYSDIESVLKINGSLCAPFRVCRGVRQGCALSGMLYSLSLEPLLQKIRSS--VHGLVLPGFSNNIV 230          
BLAST of mRNA_P-wetherbeei_contig5205.2.1 vs. uniprot
Match: A0A672HKG1_SALFA (Reverse transcriptase domain-containing protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672HKG1_SALFA)

HSP 1 Score: 109 bits (273), Expect = 1.290e-24
Identity = 69/166 (41.57%), Postives = 94/166 (56.63%), Query Frame = 1
Query:    7 NYRLIALLNVDYKILANAWSQKLALWLPAAIGLDQTGFVPGRDIATNITLLRDLAAQSGAQASKNFSAAILFLAFAKAYETVEHDFLWRALEARGLPKSFVLNVQLLYRGASATLQINGRAAAPLLPGRGVRQGCLLSSPLFLLVLECLLDVLREDEGLKGVLLKG 504
            N+R ++LL VDYK+L+   + +L   +   I  DQT  VPGR +  NI L+RD+   S    S +  A  + +   KA++ VEH FLWR +E+ G    F+  +Q+LYR   + L+ING   AP    RGVRQGC LS  L  L LE LL  L     L+G+LL G
Sbjct:  527 NWRPVSLLCVDYKLLSKVLASRLGRAMEQVIHRDQTNCVPGRSMVDNIHLIRDVLEVSS---SLDIDAGQISVDQEKAFDRVEHSFLWRVMESFGFSAGFIAKIQVLYRDIESVLKINGSLCAPFRVCRGVRQGCALSGMLDALSLEPLLSKL--CSSLQGLLLPG 687          
BLAST of mRNA_P-wetherbeei_contig5205.2.1 vs. uniprot
Match: A0A3Q3H439_9LABR (Reverse transcriptase domain-containing protein n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3H439_9LABR)

HSP 1 Score: 109 bits (272), Expect = 1.750e-24
Identity = 65/172 (37.79%), Postives = 99/172 (57.56%), Query Frame = 1
Query:    7 NYRLIALLNVDYKILANAWSQKLALWLPAAIGLDQTGFVPGRDIATNITLLRDLAAQSGAQASKNFSAAILFLAFAKAYETVEHDFLWRALEARGLPKSFVLNVQLLYRGASATLQINGRAAAPLLPGRGVRQGCLLSSPLFLLVLECLLDVLREDEGLKGVLLKGRPSRVV 522
            N+R ++LL VDYK+L+  ++ +L   +   I  DQT  VPGR +  N+ L+RD+   S    S   +  ++ L   KA++ VEH+FLW+ +E  G    F+  +++LY G  + L+ NG   AP    RGVRQGC LS  L+ L LE LL+ +R     +G++L G  S +V
Sbjct:  499 NWRPVSLLCVDYKLLSKLFASRLGKAMEQVIHRDQTYCVPGRSMVDNVHLIRDVLDVSS---SSGCNTGLISLDQEKAFDRVEHNFLWKVMEKFGFSAGFIAKIKVLYSGVESVLKFNGGLCAPFRVCRGVRQGCALSGMLYTLSLEPLLNNIRYHS--QGLVLPGFNSNIV 665          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5205.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3Q3B436_KRYMA4.030e-2841.86Reverse transcriptase domain-containing protein n=... [more]
A0A672HUD6_SALFA7.590e-2841.57Reverse transcriptase domain-containing protein n=... [more]
A0A146I3T2_MYCCL1.300e-2642.20Uncharacterized protein n=2 Tax=Mycena chlorophos ... [more]
A0A665TRI9_ECHNA1.350e-2539.53Reverse transcriptase domain-containing protein n=... [more]
A0A3Q2ZXK0_KRYMA3.670e-2538.95Reverse transcriptase domain-containing protein n=... [more]
A0A3Q3H443_9LABR6.770e-2543.21Reverse transcriptase domain-containing protein n=... [more]
A0A3Q3F5N5_9LABR6.790e-2543.21Reverse transcriptase domain-containing protein n=... [more]
A0A3Q3AE51_KRYMA9.080e-2538.95Reverse transcriptase domain-containing protein n=... [more]
A0A672HKG1_SALFA1.290e-2441.57Reverse transcriptase domain-containing protein n=... [more]
A0A3Q3H439_9LABR1.750e-2437.79Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5205contigP-wetherbeei_contig5205:1662..2183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog69293.ENSGACP00000000161
PFAMsExo_endo_phos,RVT_1
Model size522
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.41e-25
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39SG3@33154|Opisthokonta,3CQ8S@33208|Metazoa,3E6E3@33213|Bilateria,48QB5@7711|Chordata,49KX3@7742|Vertebrata,4A8SK@7898|Actinopterygii
DescriptionEndonuclease/Exonuclease/phosphatase family
Cds size522
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186780.7374997-CDS-P-wetherbeei_contig5205:1661..21831683186780.7374997-CDS-P-wetherbeei_contig5205:1661..2183Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5205 1662..2183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5205.2.1prot_P-wetherbeei_contig5205.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5205 1662..2183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5205.2.1

>prot_P-wetherbeei_contig5205.2.1 ID=prot_P-wetherbeei_contig5205.2.1|Name=mRNA_P-wetherbeei_contig5205.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
PANYRLIALLNVDYKILANAWSQKLALWLPAAIGLDQTGFVPGRDIATNI
TLLRDLAAQSGAQASKNFSAAILFLAFAKAYETVEHDFLWRALEARGLPK
SFVLNVQLLYRGASATLQINGRAAAPLLPGRGVRQGCLLSSPLFLLVLEC
LLDVLREDEGLKGVLLKGRPSRVV
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mRNA from alignment at P-wetherbeei_contig5205:1662..2183+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5205.2.1 ID=mRNA_P-wetherbeei_contig5205.2.1|Name=mRNA_P-wetherbeei_contig5205.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig5205:1662..2183+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGCCAACTATCGACTGATTGCGCTGCTCAATGTCGACTACAAGATCTT GGCCAACGCGTGGTCGCAAAAGCTGGCGCTGTGGCTGCCCGCGGCCATCG GCCTAGACCAGACTGGCTTCGTGCCGGGCCGCGACATCGCCACCAACATC ACCCTGCTGCGGGATCTGGCAGCTCAGAGCGGCGCTCAGGCGAGTAAGAA CTTTTCGGCGGCCATTCTGTTCTTGGCCTTTGCAAAGGCGTACGAGACGG TGGAGCATGATTTCCTGTGGCGTGCGCTAGAGGCGAGGGGCCTTCCAAAG AGCTTTGTGCTCAACGTTCAGCTGCTGTATCGTGGAGCCTCGGCGACGCT CCAGATCAACGGCCGGGCCGCTGCCCCTCTCCTTCCGGGGCGGGGGGTGC GGCAGGGCTGCCTGCTCTCGTCGCCGCTTTTCCTTCTCGTTCTTGAGTGC CTCCTGGATGTGCTGCGGGAGGACGAAGGGCTGAAGGGGGTACTGCTGAA AGGCAGGCCGAGCAGAGTGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5205:1662..2183+

>mRNA_P-wetherbeei_contig5205.2.1 ID=mRNA_P-wetherbeei_contig5205.2.1|Name=mRNA_P-wetherbeei_contig5205.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig5205:1662..2183+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGCCAACTATCGACTGATTGCGCTGCTCAATGTCGACTACAAGATCTT
GGCCAACGCGTGGTCGCAAAAGCTGGCGCTGTGGCTGCCCGCGGCCATCG
GCCTAGACCAGACTGGCTTCGTGCCGGGCCGCGACATCGCCACCAACATC
ACCCTGCTGCGGGATCTGGCAGCTCAGAGCGGCGCTCAGGCGAGTAAGAA
CTTTTCGGCGGCCATTCTGTTCTTGGCCTTTGCAAAGGCGTACGAGACGG
TGGAGCATGATTTCCTGTGGCGTGCGCTAGAGGCGAGGGGCCTTCCAAAG
AGCTTTGTGCTCAACGTTCAGCTGCTGTATCGTGGAGCCTCGGCGACGCT
CCAGATCAACGGCCGGGCCGCTGCCCCTCTCCTTCCGGGGCGGGGGGTGC
GGCAGGGCTGCCTGCTCTCGTCGCCGCTTTTCCTTCTCGTTCTTGAGTGC
CTCCTGGATGTGCTGCGGGAGGACGAAGGGCTGAAGGGGGTACTGCTGAA
AGGCAGGCCGAGCAGAGTGGTG
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