mRNA_P-wetherbeei_contig52042.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52042.1.1
Unique NamemRNA_P-wetherbeei_contig52042.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: UPI001FF9FEA4 (hypothetical protein n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001FF9FEA4)

HSP 1 Score: 93.2 bits (230), Expect = 3.560e-23
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    4 VFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
            +FP +  LG  LLL+HSH + N ++ LL+E+SH  + L  +AAG ARWLE+R  G +  + AWIWP++FI +GLVLL YRE+
Sbjct:    1 MFPLTTALGGALLLTHSHAIANIKDQLLIEMSHTPLALCGIAAGWARWLELRLDGRVRNVAAWIWPVAFILVGLVLLDYREA 82          
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: A0A1G6QIH5_9PROT (Putative copper resistance protein D n=7 Tax=Acetobacteraceae TaxID=433 RepID=A0A1G6QIH5_9PROT)

HSP 1 Score: 98.2 bits (243), Expect = 4.410e-22
Identity = 43/83 (51.81%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 YVFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
            +VFP + + G +LLL+H+H ++N +EA L+ELSHL + L A+ AGCARW E+R    +ARI  W+WP   IG+GL+LL YRE+
Sbjct:  469 FVFPLAMLAGGVLLLAHTHAISNIKEAQLIELSHLPLALLAVVAGCARWTELRGPPELARIGRWLWPACLIGIGLLLLLYREA 551          
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: A0A5M6IZZ0_9PROT (Copper resistance protein n=1 Tax=Rhodovastum atsumiense TaxID=504468 RepID=A0A5M6IZZ0_9PROT)

HSP 1 Score: 97.1 bits (240), Expect = 1.130e-21
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 YVFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
            YVFP    +G   LL+HSH ++N +E LL+EL+H  + LF +AAG ARWLE+R  G  ARI AW+WP+ F+ +GL LL YRE+
Sbjct:  467 YVFPIVCAIGGAALLTHSHAISNVKEQLLIELTHTPLALFGVAAGWARWLELRLDGRAARIAAWVWPICFVLVGLTLLNYREA 549          
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: UPI001FD76762 (CopD family protein n=1 Tax=Bradyrhizobium vignae TaxID=1549949 RepID=UPI001FD76762)

HSP 1 Score: 94.0 bits (232), Expect = 4.990e-21
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    4 VFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
            VFP +  LG  LLL+HSH + N ++ LL+E+SH  + L  +AAG ARWLE+R  G +  + AWIWP++F+ +GLVLL YRE+
Sbjct:  271 VFPLTTALGGALLLTHSHAIANIKDQLLIEMSHTPLALCGIAAGWARWLELRLDGRVREVAAWIWPVAFVLVGLVLLDYREA 352          
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: UPI001082179F (CopD family protein n=1 Tax=Crenalkalicoccus roseus TaxID=1485588 RepID=UPI001082179F)

HSP 1 Score: 94.7 bits (234), Expect = 7.590e-21
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 YVFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
            YVFP S + G +LLLSH+H L N +EALL+ELSHL + +FAL AGCARW E+R    +A    WIWP+  +  G +L+ YRE+
Sbjct:  483 YVFPLSMLTGGVLLLSHTHALANYKEALLIELSHLPLAVFALVAGCARWTELRGPRALAVRARWIWPVCLLLTGYMLVTYREA 565          
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: A0A176Y8H5_9BRAD (Copper resistance protein n=1 Tax=Bradyrhizobium centrolobii TaxID=1505087 RepID=A0A176Y8H5_9BRAD)

HSP 1 Score: 94.4 bits (233), Expect = 1.020e-20
Identity = 41/82 (50.00%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    4 VFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
            VFP +  LG  LLL+HSH + N ++ LL+E+SH  + L  +AAG ARWLE+R  G ++R+ +WIWP++F+ +GL+LL YRE+
Sbjct:  470 VFPLTTALGGALLLTHSHAIANIKDQLLIEMSHTPLALCGVAAGWARWLELRLDGRVSRLASWIWPVAFVLVGLILLDYREA 551          
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: A0A0E4BLR0_9BRAD (CopD domain-containing protein n=17 Tax=Bradyrhizobium TaxID=374 RepID=A0A0E4BLR0_9BRAD)

HSP 1 Score: 94.0 bits (232), Expect = 1.400e-20
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    4 VFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
            VFP +  LG  LLL+HSH + N ++ LL+E+SH  + L  +AAG ARWLE+R  G + R  AWIWP++FI +GL+LL YRE+
Sbjct:  470 VFPLTTALGGALLLAHSHAIANIKDQLLIEMSHTPLALCGVAAGWARWLELRLDGRVRRAAAWIWPVAFILVGLILLDYREA 551          
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: A0A2U3Q6F9_9BRAD (CopD domain-containing protein n=10 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A2U3Q6F9_9BRAD)

HSP 1 Score: 94.0 bits (232), Expect = 1.400e-20
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    4 VFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
            VFP +  LG  LLL+HSH + N ++ LL+E+SH  + L  +AAG ARWLE+R  G +  + AWIWP++F+ +GLVLL YRE+
Sbjct:  470 VFPLTTALGGALLLTHSHAIANIKDQLLIEMSHTPLALCGIAAGWARWLELRLDGRVREVAAWIWPVAFVLVGLVLLDYREA 551          
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: UPI001C6BD2F1 (Copper resistance protein n=1 Tax=Bradyrhizobium sp. BR 10289 TaxID=2749993 RepID=UPI001C6BD2F1)

HSP 1 Score: 89.7 bits (221), Expect = 2.310e-20
Identity = 39/82 (47.56%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    4 VFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
            VFP    LG  LLL+HSH + N ++ LL+E+SH  + L  + AG ARWLE+R  G + ++ AW+WP++F+ +GL+LL YRE+
Sbjct:  133 VFPLVTALGGALLLTHSHAIANIKDQLLIEMSHTPLALCGVLAGWARWLELRMDGRVRQVAAWVWPVAFLLVGLILLDYREA 214          
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: H0TZC4_9BRAD (Putative Copper resistance protein, copD family n=1 Tax=Bradyrhizobium sp. STM 3843 TaxID=551947 RepID=H0TZC4_9BRAD)

HSP 1 Score: 91.7 bits (226), Expect = 9.190e-20
Identity = 39/82 (47.56%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    4 VFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
            VFP +  +G  LL++HSH + N ++ LL+E+SH  + L  + AG ARWLE+R  G I+R+ AW+WP++F+ +GL+LL YRE+
Sbjct:  471 VFPLTVAVGGALLMTHSHAIANIKDQLLIEMSHTPLALCGMTAGWARWLELRLQGRISRVAAWVWPIAFVLVGLILLDYREA 552          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001FF9FEA43.560e-2351.22hypothetical protein n=1 Tax=unclassified Bradyrhi... [more]
A0A1G6QIH5_9PROT4.410e-2251.81Putative copper resistance protein D n=7 Tax=Aceto... [more]
A0A5M6IZZ0_9PROT1.130e-2153.01Copper resistance protein n=1 Tax=Rhodovastum atsu... [more]
UPI001FD767624.990e-2151.22CopD family protein n=1 Tax=Bradyrhizobium vignae ... [more]
UPI001082179F7.590e-2153.01CopD family protein n=1 Tax=Crenalkalicoccus roseu... [more]
A0A176Y8H5_9BRAD1.020e-2050.00Copper resistance protein n=1 Tax=Bradyrhizobium c... [more]
A0A0E4BLR0_9BRAD1.400e-2052.44CopD domain-containing protein n=17 Tax=Bradyrhizo... [more]
A0A2U3Q6F9_9BRAD1.400e-2051.22CopD domain-containing protein n=10 Tax=Bradyrhizo... [more]
UPI001C6BD2F12.310e-2047.56Copper resistance protein n=1 Tax=Bradyrhizobium s... [more]
H0TZC4_9BRAD9.190e-2047.56Putative Copper resistance protein, copD family n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52042contigP-wetherbeei_contig52042:8..259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1038862.KB893805_gene3877
PFAMsCopD
Model size252
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07245
KEGG TC9.B.62.1
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.22e-21
EggNOG OGsCOG1276@1|root,COG1276@2|Bacteria,1MXRN@1224|Proteobacteria,2U272@28211|Alphaproteobacteria,3JVTC@41294|Bradyrhizobiaceae
DescriptionCopper resistance protein D
Cds size252
COG categoryP
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186780.5836582-CDS-P-wetherbeei_contig52042:7..2591683186780.5836582-CDS-P-wetherbeei_contig52042:7..259Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52042 8..259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52042.1.1prot_P-wetherbeei_contig52042.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52042 8..259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52042.1.1

>prot_P-wetherbeei_contig52042.1.1 ID=prot_P-wetherbeei_contig52042.1.1|Name=mRNA_P-wetherbeei_contig52042.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
YVFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWL
EIRAGGTIARICAWIWPLSFIGLGLVLLFYRES*
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mRNA from alignment at P-wetherbeei_contig52042:8..259+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52042.1.1 ID=mRNA_P-wetherbeei_contig52042.1.1|Name=mRNA_P-wetherbeei_contig52042.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig52042:8..259+ (Phaeothamnion wetherbeei SAG_119_79)
TACGTATTTCCGTTCAGCAATGTGCTGGGCGCCATCCTGTTGCTGTCCCA TAGCCACGATCTGAATAACCAACAGGAAGCGCTGTTGATGGAATTAAGCC ATCTCGGCATCGGCCTGTTCGCACTCGCGGCGGGATGCGCGCGCTGGCTG GAGATCCGCGCCGGCGGTACCATCGCGCGCATCTGCGCGTGGATCTGGCC ACTCAGCTTCATCGGCCTCGGCCTGGTGCTGCTGTTCTATCGCGAGAGCT GA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52042:8..259+

>mRNA_P-wetherbeei_contig52042.1.1 ID=mRNA_P-wetherbeei_contig52042.1.1|Name=mRNA_P-wetherbeei_contig52042.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig52042:8..259+ (Phaeothamnion wetherbeei SAG_119_79)
TACGTATTTCCGTTCAGCAATGTGCTGGGCGCCATCCTGTTGCTGTCCCA
TAGCCACGATCTGAATAACCAACAGGAAGCGCTGTTGATGGAATTAAGCC
ATCTCGGCATCGGCCTGTTCGCACTCGCGGCGGGATGCGCGCGCTGGCTG
GAGATCCGCGCCGGCGGTACCATCGCGCGCATCTGCGCGTGGATCTGGCC
ACTCAGCTTCATCGGCCTCGGCCTGGTGCTGCTGTTCTATCGCGAGAGCT
GA
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