mRNA_P-wetherbeei_contig52010.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig52010.1.1 vs. uniprot
Match: A0A4Q2SBD7_9ACTN (Energy-coupling factor transporter transmembrane protein EcfT n=3 Tax=Nocardioides TaxID=1839 RepID=A0A4Q2SBD7_9ACTN) HSP 1 Score: 311 bits (797), Expect = 8.620e-104 Identity = 159/182 (87.36%), Postives = 170/182 (93.41%), Query Frame = 1
Query: 1 AQALRGGATFGVGRLRRFLVPVLEDALERSLSLAAGMDTRGYGRSGGATRGERRLTGSLLLLALIGICVGTYAWLDPTAPQVLALPMLGGGVVVAALGLVSAGRRVHRTRYRPDPWRTPELVTVGTGLVVAVLGWWIGHAQVVVAYPGVDVAPYLSPAALLVGVLGMVPAVATPVPASAPVR 546
AQALRGG+T GVGRLRRFLVPVLEDALERSL+LAAGMDTRGYGRSGGA+ ER +TGSLLLLAL GICVGTYAWLDPTAP+VLA+PMLG GVVVA LGLVSAGRRV RTRYRPDPWR PELVT GTGLVVAVLGW++ HAQVVVAYPGVDVAPYLSP ALLVGV+G++PAVATPVPASAPVR
Sbjct: 179 AQALRGGSTTGVGRLRRFLVPVLEDALERSLALAAGMDTRGYGRSGGASPRERWVTGSLLLLALTGICVGTYAWLDPTAPRVLAVPMLGAGVVVAVLGLVSAGRRVQRTRYRPDPWRAPELVTAGTGLVVAVLGWYVAHAQVVVAYPGVDVAPYLSPLALLVGVIGILPAVATPVPASAPVR 360
BLAST of mRNA_P-wetherbeei_contig52010.1.1 vs. uniprot
Match: A0A4Q2S582_9ACTN (Energy-coupling factor transporter transmembrane protein EcfT n=3 Tax=Nocardioides TaxID=1839 RepID=A0A4Q2S582_9ACTN) HSP 1 Score: 309 bits (791), Expect = 6.570e-103 Identity = 158/179 (88.27%), Postives = 166/179 (92.74%), Query Frame = 1
Query: 1 AQALRGGATFGVGRLRRFLVPVLEDALERSLSLAAGMDTRGYGRSGGATRGERRLTGSLLLLALIGICVGTYAWLDPTAPQVLALPMLGGGVVVAALGLVSAGRRVHRTRYRPDPWRTPELVTVGTGLVVAVLGWWIGHAQVVVAYPGVDVAPYLSPAALLVGVLGMVPAVATPVPASA 537
AQALRGGAT GVGRLRRFLVPVLEDALERSL+LAAGMDTRGYGRSGGA+ GERRLTG+LLLLAL GICVGTYAWLDPTAP+VLALPMLG G VVA LGLVSAGRRV RTRYRPDPWRTPELVTVGTGLVVAVLGW++GH QVVVAYPGVD PYLSP AL+VGVLG PAVATPVPA+A
Sbjct: 177 AQALRGGATKGVGRLRRFLVPVLEDALERSLALAAGMDTRGYGRSGGASPGERRLTGALLLLALTGICVGTYAWLDPTAPRVLALPMLGVGAVVAVLGLVSAGRRVQRTRYRPDPWRTPELVTVGTGLVVAVLGWYVGHTQVVVAYPGVDAMPYLSPLALVVGVLGTAPAVATPVPATA 355
BLAST of mRNA_P-wetherbeei_contig52010.1.1 vs. uniprot
Match: A0A0Q9PWG9_9ACTN (Cobalt ABC transporter permease n=7 Tax=root TaxID=1 RepID=A0A0Q9PWG9_9ACTN) HSP 1 Score: 306 bits (785), Expect = 5.350e-102 Identity = 155/182 (85.16%), Postives = 165/182 (90.66%), Query Frame = 1
Query: 1 AQALRGGATFGVGRLRRFLVPVLEDALERSLSLAAGMDTRGYGRSGGATRGERRLTGSLLLLALIGICVGTYAWLDPTAPQVLALPMLGGGVVVAALGLVSAGRRVHRTRYRPDPWRTPELVTVGTGLVVAVLGWWIGHAQVVVAYPGVDVAPYLSPAALLVGVLGMVPAVATPVPASAPVR 546
AQALRGGAT GVGRLRRFLVPVLEDALERSLSLAAGMDTRGYGRSG AT ERR+TGSLLLLAL+GICVGTYAWLDPTAP+VLALPMLG G+ A LG+ SAGRRVHRTRYRPDPWR PELVTV TGLVVA+LGWW+ H QVVVAYPGVD+APYLSP AL+VGVLG VPA+ATPVPASA R
Sbjct: 177 AQALRGGATSGVGRLRRFLVPVLEDALERSLSLAAGMDTRGYGRSGEATPRERRVTGSLLLLALLGICVGTYAWLDPTAPRVLALPMLGAGLATAVLGMASAGRRVHRTRYRPDPWRAPELVTVATGLVVALLGWWVAHTQVVVAYPGVDLAPYLSPLALVVGVLGAVPALATPVPASAVAR 358
BLAST of mRNA_P-wetherbeei_contig52010.1.1 vs. uniprot
Match: UPI001746A668 (Energy-coupling factor transporter transmembrane protein EcfT n=2 Tax=Nocardioides hwasunensis TaxID=397258 RepID=UPI001746A668) HSP 1 Score: 298 bits (764), Expect = 8.710e-99 Identity = 155/182 (85.16%), Postives = 162/182 (89.01%), Query Frame = 1
Query: 1 AQALRGGATFGVGRLRRFLVPVLEDALERSLSLAAGMDTRGYGRSGGATRGERRLTGSLLLLALIGICVGTYAWLDPTAPQVLALPMLGGGVVVAALGLVSAGRRVHRTRYRPDPWRTPELVTVGTGLVVAVLGWWIGHAQVVVAYPGVDVAPYLSPAALLVGVLGMVPAVATPVPASAPVR 546
AQALRGG T GVGRLRRFLVPVLEDALERSLSLAAGMDTRGYGRSGGAT ERRLTGSLLLLAL GICVGTYAWLDPTAP+VLALPMLG G VVA +GLVSAGRRV RTRYRPDPWR E+V V TGL VA LGW++ H QVVVAYPGVDVAPYLSP AL+VG+LG VPAVATPVPASA VR
Sbjct: 179 AQALRGGTTTGVGRLRRFLVPVLEDALERSLSLAAGMDTRGYGRSGGATTRERRLTGSLLLLALTGICVGTYAWLDPTAPRVLALPMLGAGGVVAVVGLVSAGRRVQRTRYRPDPWRAGEVVAVVTGLAVAALGWYVAHTQVVVAYPGVDVAPYLSPLALVVGILGTVPAVATPVPASAVVR 360
BLAST of mRNA_P-wetherbeei_contig52010.1.1 vs. uniprot
Match: A0A1H4I5H4_9ACTN (Energy-coupling factor transport system permease protein n=2 Tax=Nocardioides TaxID=1839 RepID=A0A1H4I5H4_9ACTN) HSP 1 Score: 294 bits (753), Expect = 5.550e-97 Identity = 151/179 (84.36%), Postives = 159/179 (88.83%), Query Frame = 1
Query: 1 AQALRGGATFGVGRLRRFLVPVLEDALERSLSLAAGMDTRGYGRSGGATRGERRLTGSLLLLALIGICVGTYAWLDPTAPQVLALPMLGGGVVVAALGLVSAGRRVHRTRYRPDPWRTPELVTVGTGLVVAVLGWWIGHAQVVVAYPGVDVAPYLSPAALLVGVLGMVPAVATPVPASA 537
AQALRGG T GVGRLRRFLVPVLEDALERSL+LAAGMDTRGYGRSGGA+ ERR+TG LLLLAL GICVGTYAWLDPTAP+VLALPMLG GVVVA LGL SAGRRV RTRYRPDPWR E V V TGL VAVLGW++GH QV+VAYPG DVAPYLSP ALLVGVLG +PAVATPVPASA
Sbjct: 184 AQALRGGTTTGVGRLRRFLVPVLEDALERSLALAAGMDTRGYGRSGGASDRERRVTGGLLLLALTGICVGTYAWLDPTAPRVLALPMLGAGVVVAVLGLASAGRRVQRTRYRPDPWRAGEAVAVSTGLAVAVLGWYVGHTQVLVAYPGGDVAPYLSPLALLVGVLGTIPAVATPVPASA 362
BLAST of mRNA_P-wetherbeei_contig52010.1.1 vs. uniprot
Match: UPI0017499213 (energy-coupling factor transporter transmembrane protein EcfT n=1 Tax=Nocardioides flavus Wang et al. 2016 TaxID=2058780 RepID=UPI0017499213) HSP 1 Score: 294 bits (752), Expect = 6.720e-97 Identity = 149/182 (81.87%), Postives = 162/182 (89.01%), Query Frame = 1
Query: 1 AQALRGGATFGVGRLRRFLVPVLEDALERSLSLAAGMDTRGYGRSGGATRGERRLTGSLLLLALIGICVGTYAWLDPTAPQVLALPMLGGGVVVAALGLVSAGRRVHRTRYRPDPWRTPELVTVGTGLVVAVLGWWIGHAQVVVAYPGVDVAPYLSPAALLVGVLGMVPAVATPVPASAPVR 546
AQALRGG T GV RLRRFLVPVLEDALERSL+LAAGMDTRGYGRSGGA+ ERR+TG+LLLLAL GICVGTYAWLDPTAP+VLALPMLG GVVVA LGLVSAGRRV RTRYRPDPWR PE++T GLVVAVLGW++ H QVVVAYPGV + PYLSP ALL+GVLG +PAVATPVPA+AP R
Sbjct: 184 AQALRGGTTTGVARLRRFLVPVLEDALERSLALAAGMDTRGYGRSGGASVRERRVTGALLLLALTGICVGTYAWLDPTAPRVLALPMLGAGVVVAVLGLVSAGRRVQRTRYRPDPWRAPEVLTASVGLVVAVLGWYVAHTQVVVAYPGVQIVPYLSPIALLLGVLGTLPAVATPVPATAPRR 365
BLAST of mRNA_P-wetherbeei_contig52010.1.1 vs. uniprot
Match: UPI001FEEBA23 (energy-coupling factor transporter transmembrane protein EcfT n=2 Tax=unclassified Nocardioides TaxID=2615069 RepID=UPI001FEEBA23) HSP 1 Score: 292 bits (747), Expect = 2.810e-96 Identity = 151/179 (84.36%), Postives = 156/179 (87.15%), Query Frame = 1
Query: 1 AQALRGGATFGVGRLRRFLVPVLEDALERSLSLAAGMDTRGYGRSGGATRGERRLTGSLLLLALIGICVGTYAWLDPTAPQVLALPMLGGGVVVAALGLVSAGRRVHRTRYRPDPWRTPELVTVGTGLVVAVLGWWIGHAQVVVAYPGVDVAPYLSPAALLVGVLGMVPAVATPVPASA 537
AQALRGGAT GV RLRRFLVPVLEDALERSL+LAAGMDTRGYGRSGGATR ER +TGSLLLLAL GICVGTYAWLDPTAP+VLALPMLG GV VA LGLVSAGRRV RTRYRPDPWR PEL TVG G VLGW++ H Q VVAYPGVD APYLSP AL VGVLG VPAVATPVPASA
Sbjct: 174 AQALRGGATTGVARLRRFLVPVLEDALERSLALAAGMDTRGYGRSGGATRRERWVTGSLLLLALTGICVGTYAWLDPTAPRVLALPMLGAGVAVAVLGLVSAGRRVQRTRYRPDPWRAPELATVGVGXXXXVLGWYVAHTQGVVAYPGVDTAPYLSPLALAVGVLGTVPAVATPVPASA 352
BLAST of mRNA_P-wetherbeei_contig52010.1.1 vs. uniprot
Match: UPI001C92F457 (energy-coupling factor transporter transmembrane protein EcfT n=2 Tax=Nocardioides sp. zg-1228 TaxID=2763008 RepID=UPI001C92F457) HSP 1 Score: 291 bits (744), Expect = 1.060e-95 Identity = 147/182 (80.77%), Postives = 159/182 (87.36%), Query Frame = 1
Query: 1 AQALRGGATFGVGRLRRFLVPVLEDALERSLSLAAGMDTRGYGRSGGATRGERRLTGSLLLLALIGICVGTYAWLDPTAPQVLALPMLGGGVVVAALGLVSAGRRVHRTRYRPDPWRTPELVTVGTGLVVAVLGWWIGHAQVVVAYPGVDVAPYLSPAALLVGVLGMVPAVATPVPASAPVR 546
AQALRGGAT GVGRLRRFLVPVLEDALERSL+LAAGMD RGYGRSGGAT ER TGSLLLLAL GICVGTYAWLDPTAP+VLALPML G VA LG+VS+GRRVHRTRYRPDPWR PELVT G G+ VAVL W++ H +V VAYPGVDVAPYLSP AL++GVLG +PAV TPVPA+APVR
Sbjct: 183 AQALRGGATSGVGRLRRFLVPVLEDALERSLALAAGMDARGYGRSGGATARERWTTGSLLLLALTGICVGTYAWLDPTAPRVLALPMLAAGASVAVLGMVSSGRRVHRTRYRPDPWRGPELVTAGVGVAVAVLAWYVSHTEVAVAYPGVDVAPYLSPLALVLGVLGTLPAVTTPVPATAPVR 364
BLAST of mRNA_P-wetherbeei_contig52010.1.1 vs. uniprot
Match: UPI00174794AF (Energy-coupling factor transporter transmembrane protein EcfT n=3 Tax=Nocardioides TaxID=1839 RepID=UPI00174794AF) HSP 1 Score: 290 bits (741), Expect = 2.750e-95 Identity = 150/182 (82.42%), Postives = 161/182 (88.46%), Query Frame = 1
Query: 1 AQALRGGATFGVGRLRRFLVPVLEDALERSLSLAAGMDTRGYGRSGGATRGERRLTGSLLLLALIGICVGTYAWLDPTAPQVLALPMLGGGVVVAALGLVSAGRRVHRTRYRPDPWRTPELVTVGTGLVVAVLGWWIGHAQVVVAYPGVDVAPYLSPAALLVGVLGMVPAVATPVPASAPVR 546
AQALRGGAT GVGRL+RFLVPVLEDALERSLSLAAGMDTRGYGRSGGAT ER +TG+LLLLAL GICVGTYAWLDPTAPQVLALPMLG GV VA +GLVSAGRRV RTRYRPDPWR EL TVG G+ VAVLG+++ H QVVVAYPGV V PYLSP AL +GVLG +PAVATPVPA+APVR
Sbjct: 180 AQALRGGATTGVGRLQRFLVPVLEDALERSLSLAAGMDTRGYGRSGGATVRERWVTGALLLLALTGICVGTYAWLDPTAPQVLALPMLGAGVAVAVVGLVSAGRRVQRTRYRPDPWRGAELFTVGIGIAVAVLGYYVSHTQVVVAYPGVTVVPYLSPLALALGVLGALPAVATPVPATAPVR 361
BLAST of mRNA_P-wetherbeei_contig52010.1.1 vs. uniprot
Match: A0A1I0XFA2_9ACTN (Energy-coupling factor transport system permease protein n=1 Tax=Nocardioides alpinus TaxID=748909 RepID=A0A1I0XFA2_9ACTN) HSP 1 Score: 289 bits (740), Expect = 4.290e-95 Identity = 146/179 (81.56%), Postives = 160/179 (89.39%), Query Frame = 1
Query: 1 AQALRGGATFGVGRLRRFLVPVLEDALERSLSLAAGMDTRGYGRSGGATRGERRLTGSLLLLALIGICVGTYAWLDPTAPQVLALPMLGGGVVVAALGLVSAGRRVHRTRYRPDPWRTPELVTVGTGLVVAVLGWWIGHAQVVVAYPGVDVAPYLSPAALLVGVLGMVPAVATPVPASA 537
AQALRGG T GVGRLRRFLVPVLEDALERSL+LAAGMDTRGYGRSGG++ ERR+TGSLLLLALIGICVGTYAWLDPTAP++LALPMLG GVVVA LGLVSAG+RV RTRYRPDPWR E +TV G+VVAVLGW + H QV VAYPGVDV PYLSP AL VG++GM+PAVATPVPA+A
Sbjct: 179 AQALRGGTTTGVGRLRRFLVPVLEDALERSLALAAGMDTRGYGRSGGSSPRERRVTGSLLLLALIGICVGTYAWLDPTAPRILALPMLGAGVVVAVLGLVSAGQRVQRTRYRPDPWRAAEFLTVANGIVVAVLGWTVAHTQVPVAYPGVDVMPYLSPLALAVGIVGMLPAVATPVPATA 357 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52010.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig52010.1.1 >prot_P-wetherbeei_contig52010.1.1 ID=prot_P-wetherbeei_contig52010.1.1|Name=mRNA_P-wetherbeei_contig52010.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp AQALRGGATFGVGRLRRFLVPVLEDALERSLSLAAGMDTRGYGRSGGATRback to top mRNA from alignment at P-wetherbeei_contig52010:3..548+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig52010.1.1 ID=mRNA_P-wetherbeei_contig52010.1.1|Name=mRNA_P-wetherbeei_contig52010.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig52010:3..548+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig52010:3..548+ >mRNA_P-wetherbeei_contig52010.1.1 ID=mRNA_P-wetherbeei_contig52010.1.1|Name=mRNA_P-wetherbeei_contig52010.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig52010:3..548+ (Phaeothamnion wetherbeei SAG_119_79)back to top |