mRNA_P-wetherbeei_contig52007.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: A0A085K404_SPHYA (Tyr recombinase domain-containing protein n=7 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A085K404_SPHYA) HSP 1 Score: 365 bits (936), Expect = 6.160e-124 Identity = 177/183 (96.72%), Postives = 178/183 (97.27%), Query Frame = 1
Query: 1 VKEDMVSAAGEGGGRLHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSGIPVHVLAKNMGTSITYIEKHYS 549
VKE MVS A EGGGRLHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKD ENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHS PDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLL+GIPVHVLAKNMGTSITYIEKHYS
Sbjct: 229 VKEGMVSTAEEGGGRLHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDTENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSQPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLTGIPVHVLAKNMGTSITYIEKHYS 411
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: UPI001F3020DA (site-specific integrase n=2 Tax=Acidocella facilis TaxID=525 RepID=UPI001F3020DA) HSP 1 Score: 343 bits (881), Expect = 2.410e-118 Identity = 166/183 (90.71%), Postives = 172/183 (93.99%), Query Frame = 1
Query: 1 VKEDMVSAAGEGGGRLHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSGIPVHVLAKNMGTSITYIEKHYS 549
VKE +V E GGRLHRSGPNAMHRYQRELLR+YLLFMANSGLRPNEARQLCW+DLRIEKD ENKPALVVEVAPTTKTGARTVVCREGTQ YLDRLK+LSRH P DLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSGIPVH+LAKNMGTSI+YIEKHYS
Sbjct: 40 VKEGLVLTPEERGGRLHRSGPNAMHRYQRELLRNYLLFMANSGLRPNEARQLCWQDLRIEKDTENKPALVVEVAPTTKTGARTVVCREGTQAYLDRLKQLSRHVEPGDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSGIPVHILAKNMGTSISYIEKHYS 222
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: A0A0D6PC54_9PROT (Integrase n=1 Tax=Acidocella aminolytica 101 = DSM 11237 TaxID=1120923 RepID=A0A0D6PC54_9PROT) HSP 1 Score: 343 bits (881), Expect = 1.230e-115 Identity = 166/183 (90.71%), Postives = 172/183 (93.99%), Query Frame = 1
Query: 1 VKEDMVSAAGEGGGRLHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSGIPVHVLAKNMGTSITYIEKHYS 549
VKE +V E GGRLHRSGPNAMHRYQRELLR+YLLFMANSGLRPNEARQLCW+DLRIEKD ENKPALVVEVAPTTKTGARTVVCREGTQ YLDRLK+LSRH P DLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSGIPVH+LAKNMGTSI+YIEKHYS
Sbjct: 226 VKEGLVLTPEERGGRLHRSGPNAMHRYQRELLRNYLLFMANSGLRPNEARQLCWQDLRIEKDTENKPALVVEVAPTTKTGARTVVCREGTQAYLDRLKQLSRHIEPGDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSGIPVHILAKNMGTSISYIEKHYS 408
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: A0A522A3Z9_9PROT (Tyr recombinase domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A522A3Z9_9PROT) HSP 1 Score: 291 bits (744), Expect = 9.300e-95 Identity = 134/183 (73.22%), Postives = 158/183 (86.34%), Query Frame = 1
Query: 1 VKEDMVSAAGEGGGRLHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSGIPVHVLAKNMGTSITYIEKHYS 549
V E +S+ G GG+LHRSGP+A+HR QRE+LR YLLFMANSGLRPNEARQL WRD+R E+D + PALV+EVAPTTKTGARTVVCREGT YL RLKKL++H+ PDD +FCG+DG+PV+NFN TF +LS + LLDDRWGKRR++YSLRHFYCTQ LLSG+P+HVLAKNMGTSI YIE+HYS
Sbjct: 227 VGEKTISSKGANGGKLHRSGPHALHRLQREMLRHYLLFMANSGLRPNEARQLLWRDIREEEDEDGTPALVIEVAPTTKTGARTVVCREGTMHYLTRLKKLAKHTEPDDHIFCGFDGEPVDNFNNTFKKLLSGIGLLDDRWGKRRSIYSLRHFYCTQSLLSGVPIHVLAKNMGTSIAYIEQHYS 409
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: UPI00087FA89A (tyrosine-type recombinase/integrase n=1 Tax=Bosea robiniae TaxID=1036780 RepID=UPI00087FA89A) HSP 1 Score: 170 bits (430), Expect = 9.680e-48 Identity = 86/166 (51.81%), Postives = 114/166 (68.67%), Query Frame = 1
Query: 52 RSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCT-QCLLSGIPVHVLAKNMGTSITYIEKHY 546
+ GP+ +HR+QRELLR+Y++FM +SGLRPNEARQL W D+ +DA+ +V+ +AP TKTGAR V T L+R+K S H+ PDDLVFC G+ VENF KTF S+L++L +L R+GK RT+YSLR+ Y T + GI LA NMGTS T + +HY
Sbjct: 245 KKGPHELHRWQRELLRNYVVFMGSSGLRPNEARQLRWCDVTRHQDAKGNAYVVLHIAPDTKTGARECVPLRNVPTLLERIKASSNHTQPDDLVFCNRKGEAVENFGKTFKSVLNKLGMLKSRFGKDRTIYSLRNTYATFRIRYGGIEFDDLASNMGTSPTILFRHY 410
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: A0A0Q6CHG8_9HYPH (Tyr recombinase domain-containing protein n=2 Tax=unclassified Aureimonas TaxID=2615206 RepID=A0A0Q6CHG8_9HYPH) HSP 1 Score: 166 bits (421), Expect = 2.280e-46 Identity = 85/163 (52.15%), Postives = 106/163 (65.03%), Query Frame = 1
Query: 61 PNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLL-SGIPVHVLAKNMGTSITYIEKHY 546
PN H + RELLR Y+LFM SGLRPNEARQL WRD+ D + +V+ VAPTTKTG R + +DRLK S +APD+LVFC G P++NF KTF ++L R LL DR+G+ RT+YSLRH YCT LL S + + LA+N+GTS I HY
Sbjct: 253 PNGFHLWHRELLRSYVLFMGASGLRPNEARQLRWRDIATHTDEQGTKHIVLYVAPTTKTGERETIPLRNAWVIIDRLKAASSFTAPDNLVFCDRSGAPIDNFGKTFKALLIRCNLLKDRFGRDRTIYSLRHTYCTLKLLHSDVKIEDLAQNLGTSPATIFAHY 415
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: A0A2E4XVT6_9PROT (Tyr recombinase domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4XVT6_9PROT) HSP 1 Score: 164 bits (415), Expect = 2.320e-46 Identity = 87/171 (50.88%), Postives = 111/171 (64.91%), Query Frame = 1
Query: 37 GGRLHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSG-IPVHVLAKNMGTSITYIEKHY 546
GGR HR +H +QR +LR+Y+LFM SGLRPNEARQL WRD+ D +++ ++PTTKTGAR V + YLD++K +S+ + DDLVFC DG+PV N+ KTF IL LL+DR+GK RT+YSLRH Y T L G + LA+NMGTS T I HY
Sbjct: 157 GGRSHR-----LHIWQRRMLRNYILFMGTSGLRPNEARQLRWRDVGSIIDENGTEQVLLHISPTTKTGARECVPLRSAKRYLDQIKTISKFTNDDDLVFCNQDGEPVSNYGKTFKKILKETNLLEDRFGKPRTIYSLRHTYATFRLYYGRANIEDLAQNMGTSPTQIFNHY 322
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: UPI001674002E (tyrosine-type recombinase/integrase n=1 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI001674002E) HSP 1 Score: 164 bits (416), Expect = 1.200e-45 Identity = 81/175 (46.29%), Postives = 118/175 (67.43%), Query Frame = 1
Query: 25 AGEGGGRLHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSG-IPVHVLAKNMGTSITYIEKHY 546
+G GGR + +++H +QR+LLR+Y+L M +GLRPNEARQL W+D+++ ++ + + + V+PTTKTG R + + L+R++ S H+ PDD VFCG DG P+ENF KTF S+L+ LL DR+G+ RT+YSLRH Y T +L G + + LA+NMGTS I +HY
Sbjct: 239 SGSDGGRSPKRSAHSLHLWQRQLLRNYVLIMGMTGLRPNEARQLRWKDVQVIQNGNDHTFVALHVSPTTKTGERLCIPLARCRDVLERVRAASTHTQPDDFVFCGRDGTPIENFGKTFKSVLTEAGLLKDRFGRVRTIYSLRHTYATLRILHGSVSIDDLAQNMGTSPAIIFQHY 413
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: A0A2E2E2F4_9PROT (Tyr recombinase domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E2E2F4_9PROT) HSP 1 Score: 163 bits (413), Expect = 1.340e-45 Identity = 84/169 (49.70%), Postives = 112/169 (66.27%), Query Frame = 1
Query: 46 LHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSG-IPVHVLAKNMGTSITYIEKHYS 549
+ + GP++ H +QR ++R+Y+LFMA SGLRPNEA+QL WRD K + LV+ V TTKTG R V T+ LDRL+ LS ++ DDLVFC ++G PV+NF KTF +L ++ +L D+ G+ RT+YSLRH Y T LL G V LA+NMGTS I+ HYS
Sbjct: 202 IRKRGPHSRHLFQRNMIRNYILFMAMSGLRPNEAKQLKWRDFSNFKTEDGIDHLVIHVPETTKTGGRACVPLRSTKRVLDRLRSLSPNNRNDDLVFCDFEGNPVQNFGKTFKKLLIQMDMLHDKSGQARTIYSLRHTYATFRLLYGHARVDDLARNMGTSPALIQNHYS 370
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: A0A0Q8BCD1_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium sp. Root157 TaxID=1736477 RepID=A0A0Q8BCD1_9HYPH) HSP 1 Score: 163 bits (413), Expect = 3.500e-45 Identity = 86/163 (52.76%), Postives = 108/163 (66.26%), Query Frame = 1
Query: 64 NAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCT-QCLLSGIPVHVLAKNMGTSITYIEKHYS 549
N +H Y R LLR+Y+LFM SGLRPNEARQL WRDL+I+KD + L + +APTTKTG RT V + R+++ + + PDD VF DG+PVENF KTF S+L LL D +G+ RT+YSLRH Y T + S I +H LAKNMGTS T + HYS
Sbjct: 255 NGVHIYHRHLLRNYVLFMQASGLRPNEARQLRWRDLKIKKDRKGIDQLHLNIAPTTKTGERTCVTLHNAIEIVARMREQNNRTGPDDFVFSDRDGRPVENFGKTFKSVLDAAGLLTDSFGQVRTIYSLRHTYATFRIANSDISLHDLAKNMGTSPTTLFSHYS 417 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig52007.1.1 >prot_P-wetherbeei_contig52007.1.1 ID=prot_P-wetherbeei_contig52007.1.1|Name=mRNA_P-wetherbeei_contig52007.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp MVSAAGEGGGRLHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWback to top mRNA from alignment at P-wetherbeei_contig52007:1..549- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig52007.1.1 ID=mRNA_P-wetherbeei_contig52007.1.1|Name=mRNA_P-wetherbeei_contig52007.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig52007:1..549- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig52007:1..549- >mRNA_P-wetherbeei_contig52007.1.1 ID=mRNA_P-wetherbeei_contig52007.1.1|Name=mRNA_P-wetherbeei_contig52007.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig52007:1..549- (Phaeothamnion wetherbeei SAG_119_79)back to top |