mRNA_P-wetherbeei_contig52007.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52007.1.1
Unique NamemRNA_P-wetherbeei_contig52007.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: A0A085K404_SPHYA (Tyr recombinase domain-containing protein n=7 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A085K404_SPHYA)

HSP 1 Score: 365 bits (936), Expect = 6.160e-124
Identity = 177/183 (96.72%), Postives = 178/183 (97.27%), Query Frame = 1
Query:    1 VKEDMVSAAGEGGGRLHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSGIPVHVLAKNMGTSITYIEKHYS 549
            VKE MVS A EGGGRLHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKD ENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHS PDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLL+GIPVHVLAKNMGTSITYIEKHYS
Sbjct:  229 VKEGMVSTAEEGGGRLHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDTENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSQPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLTGIPVHVLAKNMGTSITYIEKHYS 411          
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: UPI001F3020DA (site-specific integrase n=2 Tax=Acidocella facilis TaxID=525 RepID=UPI001F3020DA)

HSP 1 Score: 343 bits (881), Expect = 2.410e-118
Identity = 166/183 (90.71%), Postives = 172/183 (93.99%), Query Frame = 1
Query:    1 VKEDMVSAAGEGGGRLHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSGIPVHVLAKNMGTSITYIEKHYS 549
            VKE +V    E GGRLHRSGPNAMHRYQRELLR+YLLFMANSGLRPNEARQLCW+DLRIEKD ENKPALVVEVAPTTKTGARTVVCREGTQ YLDRLK+LSRH  P DLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSGIPVH+LAKNMGTSI+YIEKHYS
Sbjct:   40 VKEGLVLTPEERGGRLHRSGPNAMHRYQRELLRNYLLFMANSGLRPNEARQLCWQDLRIEKDTENKPALVVEVAPTTKTGARTVVCREGTQAYLDRLKQLSRHVEPGDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSGIPVHILAKNMGTSISYIEKHYS 222          
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: A0A0D6PC54_9PROT (Integrase n=1 Tax=Acidocella aminolytica 101 = DSM 11237 TaxID=1120923 RepID=A0A0D6PC54_9PROT)

HSP 1 Score: 343 bits (881), Expect = 1.230e-115
Identity = 166/183 (90.71%), Postives = 172/183 (93.99%), Query Frame = 1
Query:    1 VKEDMVSAAGEGGGRLHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSGIPVHVLAKNMGTSITYIEKHYS 549
            VKE +V    E GGRLHRSGPNAMHRYQRELLR+YLLFMANSGLRPNEARQLCW+DLRIEKD ENKPALVVEVAPTTKTGARTVVCREGTQ YLDRLK+LSRH  P DLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSGIPVH+LAKNMGTSI+YIEKHYS
Sbjct:  226 VKEGLVLTPEERGGRLHRSGPNAMHRYQRELLRNYLLFMANSGLRPNEARQLCWQDLRIEKDTENKPALVVEVAPTTKTGARTVVCREGTQAYLDRLKQLSRHIEPGDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSGIPVHILAKNMGTSISYIEKHYS 408          
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: A0A522A3Z9_9PROT (Tyr recombinase domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A522A3Z9_9PROT)

HSP 1 Score: 291 bits (744), Expect = 9.300e-95
Identity = 134/183 (73.22%), Postives = 158/183 (86.34%), Query Frame = 1
Query:    1 VKEDMVSAAGEGGGRLHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSGIPVHVLAKNMGTSITYIEKHYS 549
            V E  +S+ G  GG+LHRSGP+A+HR QRE+LR YLLFMANSGLRPNEARQL WRD+R E+D +  PALV+EVAPTTKTGARTVVCREGT  YL RLKKL++H+ PDD +FCG+DG+PV+NFN TF  +LS + LLDDRWGKRR++YSLRHFYCTQ LLSG+P+HVLAKNMGTSI YIE+HYS
Sbjct:  227 VGEKTISSKGANGGKLHRSGPHALHRLQREMLRHYLLFMANSGLRPNEARQLLWRDIREEEDEDGTPALVIEVAPTTKTGARTVVCREGTMHYLTRLKKLAKHTEPDDHIFCGFDGEPVDNFNNTFKKLLSGIGLLDDRWGKRRSIYSLRHFYCTQSLLSGVPIHVLAKNMGTSIAYIEQHYS 409          
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: UPI00087FA89A (tyrosine-type recombinase/integrase n=1 Tax=Bosea robiniae TaxID=1036780 RepID=UPI00087FA89A)

HSP 1 Score: 170 bits (430), Expect = 9.680e-48
Identity = 86/166 (51.81%), Postives = 114/166 (68.67%), Query Frame = 1
Query:   52 RSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCT-QCLLSGIPVHVLAKNMGTSITYIEKHY 546
            + GP+ +HR+QRELLR+Y++FM +SGLRPNEARQL W D+   +DA+    +V+ +AP TKTGAR  V      T L+R+K  S H+ PDDLVFC   G+ VENF KTF S+L++L +L  R+GK RT+YSLR+ Y T +    GI    LA NMGTS T + +HY
Sbjct:  245 KKGPHELHRWQRELLRNYVVFMGSSGLRPNEARQLRWCDVTRHQDAKGNAYVVLHIAPDTKTGARECVPLRNVPTLLERIKASSNHTQPDDLVFCNRKGEAVENFGKTFKSVLNKLGMLKSRFGKDRTIYSLRNTYATFRIRYGGIEFDDLASNMGTSPTILFRHY 410          
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: A0A0Q6CHG8_9HYPH (Tyr recombinase domain-containing protein n=2 Tax=unclassified Aureimonas TaxID=2615206 RepID=A0A0Q6CHG8_9HYPH)

HSP 1 Score: 166 bits (421), Expect = 2.280e-46
Identity = 85/163 (52.15%), Postives = 106/163 (65.03%), Query Frame = 1
Query:   61 PNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLL-SGIPVHVLAKNMGTSITYIEKHY 546
            PN  H + RELLR Y+LFM  SGLRPNEARQL WRD+    D +    +V+ VAPTTKTG R  +        +DRLK  S  +APD+LVFC   G P++NF KTF ++L R  LL DR+G+ RT+YSLRH YCT  LL S + +  LA+N+GTS   I  HY
Sbjct:  253 PNGFHLWHRELLRSYVLFMGASGLRPNEARQLRWRDIATHTDEQGTKHIVLYVAPTTKTGERETIPLRNAWVIIDRLKAASSFTAPDNLVFCDRSGAPIDNFGKTFKALLIRCNLLKDRFGRDRTIYSLRHTYCTLKLLHSDVKIEDLAQNLGTSPATIFAHY 415          
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: A0A2E4XVT6_9PROT (Tyr recombinase domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4XVT6_9PROT)

HSP 1 Score: 164 bits (415), Expect = 2.320e-46
Identity = 87/171 (50.88%), Postives = 111/171 (64.91%), Query Frame = 1
Query:   37 GGRLHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSG-IPVHVLAKNMGTSITYIEKHY 546
            GGR HR     +H +QR +LR+Y+LFM  SGLRPNEARQL WRD+    D      +++ ++PTTKTGAR  V     + YLD++K +S+ +  DDLVFC  DG+PV N+ KTF  IL    LL+DR+GK RT+YSLRH Y T  L  G   +  LA+NMGTS T I  HY
Sbjct:  157 GGRSHR-----LHIWQRRMLRNYILFMGTSGLRPNEARQLRWRDVGSIIDENGTEQVLLHISPTTKTGARECVPLRSAKRYLDQIKTISKFTNDDDLVFCNQDGEPVSNYGKTFKKILKETNLLEDRFGKPRTIYSLRHTYATFRLYYGRANIEDLAQNMGTSPTQIFNHY 322          
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: UPI001674002E (tyrosine-type recombinase/integrase n=1 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI001674002E)

HSP 1 Score: 164 bits (416), Expect = 1.200e-45
Identity = 81/175 (46.29%), Postives = 118/175 (67.43%), Query Frame = 1
Query:   25 AGEGGGRLHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSG-IPVHVLAKNMGTSITYIEKHY 546
            +G  GGR  +   +++H +QR+LLR+Y+L M  +GLRPNEARQL W+D+++ ++  +   + + V+PTTKTG R  +     +  L+R++  S H+ PDD VFCG DG P+ENF KTF S+L+   LL DR+G+ RT+YSLRH Y T  +L G + +  LA+NMGTS   I +HY
Sbjct:  239 SGSDGGRSPKRSAHSLHLWQRQLLRNYVLIMGMTGLRPNEARQLRWKDVQVIQNGNDHTFVALHVSPTTKTGERLCIPLARCRDVLERVRAASTHTQPDDFVFCGRDGTPIENFGKTFKSVLTEAGLLKDRFGRVRTIYSLRHTYATLRILHGSVSIDDLAQNMGTSPAIIFQHY 413          
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: A0A2E2E2F4_9PROT (Tyr recombinase domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E2E2F4_9PROT)

HSP 1 Score: 163 bits (413), Expect = 1.340e-45
Identity = 84/169 (49.70%), Postives = 112/169 (66.27%), Query Frame = 1
Query:   46 LHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCTQCLLSG-IPVHVLAKNMGTSITYIEKHYS 549
            + + GP++ H +QR ++R+Y+LFMA SGLRPNEA+QL WRD    K  +    LV+ V  TTKTG R  V    T+  LDRL+ LS ++  DDLVFC ++G PV+NF KTF  +L ++ +L D+ G+ RT+YSLRH Y T  LL G   V  LA+NMGTS   I+ HYS
Sbjct:  202 IRKRGPHSRHLFQRNMIRNYILFMAMSGLRPNEAKQLKWRDFSNFKTEDGIDHLVIHVPETTKTGGRACVPLRSTKRVLDRLRSLSPNNRNDDLVFCDFEGNPVQNFGKTFKKLLIQMDMLHDKSGQARTIYSLRHTYATFRLLYGHARVDDLARNMGTSPALIQNHYS 370          
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Match: A0A0Q8BCD1_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium sp. Root157 TaxID=1736477 RepID=A0A0Q8BCD1_9HYPH)

HSP 1 Score: 163 bits (413), Expect = 3.500e-45
Identity = 86/163 (52.76%), Postives = 108/163 (66.26%), Query Frame = 1
Query:   64 NAMHRYQRELLRDYLLFMANSGLRPNEARQLCWRDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHSAPDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYCT-QCLLSGIPVHVLAKNMGTSITYIEKHYS 549
            N +H Y R LLR+Y+LFM  SGLRPNEARQL WRDL+I+KD +    L + +APTTKTG RT V        + R+++ +  + PDD VF   DG+PVENF KTF S+L    LL D +G+ RT+YSLRH Y T +   S I +H LAKNMGTS T +  HYS
Sbjct:  255 NGVHIYHRHLLRNYVLFMQASGLRPNEARQLRWRDLKIKKDRKGIDQLHLNIAPTTKTGERTCVTLHNAIEIVARMREQNNRTGPDDFVFSDRDGRPVENFGKTFKSVLDAAGLLTDSFGQVRTIYSLRHTYATFRIANSDISLHDLAKNMGTSPTTLFSHYS 417          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52007.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A085K404_SPHYA6.160e-12496.72Tyr recombinase domain-containing protein n=7 Tax=... [more]
UPI001F3020DA2.410e-11890.71site-specific integrase n=2 Tax=Acidocella facilis... [more]
A0A0D6PC54_9PROT1.230e-11590.71Integrase n=1 Tax=Acidocella aminolytica 101 = DSM... [more]
A0A522A3Z9_9PROT9.300e-9573.22Tyr recombinase domain-containing protein n=1 Tax=... [more]
UPI00087FA89A9.680e-4851.81tyrosine-type recombinase/integrase n=1 Tax=Bosea ... [more]
A0A0Q6CHG8_9HYPH2.280e-4652.15Tyr recombinase domain-containing protein n=2 Tax=... [more]
A0A2E4XVT6_9PROT2.320e-4650.88Tyr recombinase domain-containing protein n=1 Tax=... [more]
UPI001674002E1.200e-4546.29tyrosine-type recombinase/integrase n=1 Tax=Thalas... [more]
A0A2E2E2F4_9PROT1.340e-4549.70Tyr recombinase domain-containing protein n=1 Tax=... [more]
A0A0Q8BCD1_9HYPH3.500e-4552.76Uncharacterized protein n=1 Tax=Mesorhizobium sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52007contigP-wetherbeei_contig52007:1..549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1408419.JHYG01000004_gene1264
PFAMsPhage_integrase
Model size549
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.41e-113
EggNOG OGsCOG0582@1|root,COG0582@2|Bacteria,1R4UZ@1224|Proteobacteria,2U0XX@28211|Alphaproteobacteria,2JWRV@204441|Rhodospirillales
DescriptionBelongs to the 'phage' integrase family
Cds size537
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186780.3410985-CDS-P-wetherbeei_contig52007:0..5371683186780.3410985-CDS-P-wetherbeei_contig52007:0..537Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52007 1..537 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186780.350853-UTR-P-wetherbeei_contig52007:537..5491683186780.350853-UTR-P-wetherbeei_contig52007:537..549Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52007 538..549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52007.1.1prot_P-wetherbeei_contig52007.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52007 1..537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52007.1.1

>prot_P-wetherbeei_contig52007.1.1 ID=prot_P-wetherbeei_contig52007.1.1|Name=mRNA_P-wetherbeei_contig52007.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
MVSAAGEGGGRLHRSGPNAMHRYQRELLRDYLLFMANSGLRPNEARQLCW
RDLRIEKDAENKPALVVEVAPTTKTGARTVVCREGTQTYLDRLKKLSRHS
APDDLVFCGYDGKPVENFNKTFASILSRLKLLDDRWGKRRTVYSLRHFYC
TQCLLSGIPVHVLAKNMGTSITYIEKHYS
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mRNA from alignment at P-wetherbeei_contig52007:1..549-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52007.1.1 ID=mRNA_P-wetherbeei_contig52007.1.1|Name=mRNA_P-wetherbeei_contig52007.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig52007:1..549- (Phaeothamnion wetherbeei SAG_119_79)
GTGAAAGAGGACATGGTCTCGGCGGCCGGGGAGGGGGGCGGACGGCTGCA CCGCTCCGGCCCCAACGCCATGCACCGCTATCAGCGCGAGCTGCTGCGGG ACTATCTCCTGTTCATGGCCAATTCGGGCCTTCGCCCCAACGAGGCCCGC CAACTCTGCTGGCGGGACCTGAGGATCGAGAAGGACGCCGAGAACAAGCC GGCGCTGGTCGTGGAGGTGGCGCCGACAACGAAGACGGGCGCGCGCACCG TCGTCTGCCGCGAAGGCACGCAGACGTACCTCGACCGGCTCAAGAAGCTC TCGCGGCACAGCGCGCCGGACGATCTGGTCTTCTGCGGCTATGACGGCAA GCCGGTGGAGAACTTCAACAAGACCTTCGCGAGCATCCTGTCGCGGCTGA AGCTGCTGGACGACCGGTGGGGCAAGCGGCGGACGGTCTACAGCCTGCGC CACTTCTACTGCACCCAATGCCTGCTTTCCGGCATTCCGGTCCACGTCCT GGCCAAGAACATGGGGACCTCGATCACCTACATCGAGAAGCACTACAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52007:1..549-

>mRNA_P-wetherbeei_contig52007.1.1 ID=mRNA_P-wetherbeei_contig52007.1.1|Name=mRNA_P-wetherbeei_contig52007.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig52007:1..549- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCTCGGCGGCCGGGGAGGGGGGCGGACGGCTGCACCGCTCCGGCCC
CAACGCCATGCACCGCTATCAGCGCGAGCTGCTGCGGGACTATCTCCTGT
TCATGGCCAATTCGGGCCTTCGCCCCAACGAGGCCCGCCAACTCTGCTGG
CGGGACCTGAGGATCGAGAAGGACGCCGAGAACAAGCCGGCGCTGGTCGT
GGAGGTGGCGCCGACAACGAAGACGGGCGCGCGCACCGTCGTCTGCCGCG
AAGGCACGCAGACGTACCTCGACCGGCTCAAGAAGCTCTCGCGGCACAGC
GCGCCGGACGATCTGGTCTTCTGCGGCTATGACGGCAAGCCGGTGGAGAA
CTTCAACAAGACCTTCGCGAGCATCCTGTCGCGGCTGAAGCTGCTGGACG
ACCGGTGGGGCAAGCGGCGGACGGTCTACAGCCTGCGCCACTTCTACTGC
ACCCAATGCCTGCTTTCCGGCATTCCGGTCCACGTCCTGGCCAAGAACAT
GGGGACCTCGATCACCTACATCGAGAAGCACTACAGC
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