mRNA_P-wetherbeei_contig5198.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5198.1.1
Unique NamemRNA_P-wetherbeei_contig5198.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5198.1.1 vs. uniprot
Match: A0A812Q1H0_9DINO (AgaB34 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812Q1H0_9DINO)

HSP 1 Score: 97.1 bits (240), Expect = 3.470e-19
Identity = 58/177 (32.77%), Postives = 87/177 (49.15%), Query Frame = 3 
Query:  108 DACPWLLRSAGHAATARVFNAGSCNVAVSGPDGGYGGYRLERSNLVLWLSR--------------GSTHRTLSNEVALVEAVAARHPGFVVIVVDFGKATYDSQVLLSRLTKLVVGMHGGAMWNAVRWMDLGAAEPQFVLEVLPRLGPGASCVLAKMFGVGYSTIACGDCRPERDHI 596
            DAC +L + +   +   +FNA +C +              E+SN  LWLSR                 +R +SN + L   ++ R+P   V+ V+ G   Y  QV L RL   ++  HGGA WNA RW++   A  Q ++E++P  GP  +C L KMFG  YS + C DCR  ++ +
Sbjct:  485 DACSFLQKVSAEYSL-HLFNAKACKIDA------------EQSNFYLWLSRIPRTCHGVSFPSDDCRKNRGVSNGLDLATQLSKRYPQHTVLYVNVGPVPYLDQVFLIRLANTIIAAHGGAAWNAARWLN--EALQQRIVEIMPIGGPSETCSLTKMFGGRYSFVTCRDCRTPKNGV 646
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BLAST of mRNA_P-wetherbeei_contig5198.1.1 vs. uniprot
Match: A0A7S2KKR7_BIGNA (Hypothetical protein n=1 Tax=Bigelowiella natans TaxID=227086 RepID=A0A7S2KKR7_BIGNA)

HSP 1 Score: 86.3 bits (212), Expect = 2.040e-17
Identity = 57/136 (41.91%), Postives = 78/136 (57.35%), Query Frame = 3 
Query:  273 RTLSNEVALVEAVAARHPGF--VVIVVDFGKATYDSQVLLSRLTKLVVGMHGGAMWNAVRWMDLGAAEPQFVLEVLPRLGPGASCVLAKMFGVGYSTIACGDCRPERDHIGALPEAELLAAVGAVLSG--TAVTPD 668
            R ++N   L+E +A   PG    ++ V+ G  TY +Q  L     +VVGMHGGA+W A RWM     E Q ++EVLP LGPG +C+ AKMFG  Y+   C +CR  RD  GA+    ++  V +VLS   +A  PD
Sbjct:    4 RQITNLRDLLEGLADE-PGIDRPIVTVNPGMETYLAQFGLVASAAVVVGMHGGALWGASRWMR----EDQAMIEVLPILGPGDTCMKAKMFGTQYNAHVCSECRG-RDKSGAVDVPAVVKEVVSVLSRRRSAYQPD 133
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5198.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A812Q1H0_9DINO3.470e-1932.77AgaB34 protein n=1 Tax=Symbiodinium natans TaxID=8... [more]
A0A7S2KKR7_BIGNA2.040e-1741.91Hypothetical protein n=1 Tax=Bigelowiella natans T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5198contigP-wetherbeei_contig5198:2..1080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009038030.1
PFAMsFringe
Model size784
Max annot lvl2759|Eukaryota
KEGG koko:K00731
KEGG ReactionR05908
KEGG Pathwayko00512,ko01100,map00512,map01100
KEGG ModuleM00056
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.19e-12
EggNOG OGsKOG2246@1|root,KOG2246@2759|Eukaryota
EC2.4.1.122
Descriptionglycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity
Cds size660
COG categoryS
CAZyGT31
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186779.750829-UTR-P-wetherbeei_contig5198:1..1021683186779.750829-UTR-P-wetherbeei_contig5198:1..102Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5198 2..102 -
1683186779.7944348-UTR-P-wetherbeei_contig5198:1057..10801683186779.7944348-UTR-P-wetherbeei_contig5198:1057..1080Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5198 1058..1080 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186779.7637782-CDS-P-wetherbeei_contig5198:102..4081683186779.7637782-CDS-P-wetherbeei_contig5198:102..408Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5198 103..408 -
1683186779.77293-CDS-P-wetherbeei_contig5198:703..10571683186779.77293-CDS-P-wetherbeei_contig5198:703..1057Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5198 704..1057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5198.1.1prot_P-wetherbeei_contig5198.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5198 103..1057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5198.1.1

>prot_P-wetherbeei_contig5198.1.1 ID=prot_P-wetherbeei_contig5198.1.1|Name=mRNA_P-wetherbeei_contig5198.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=220bp
MWGRQGALKPTVAGGHGPATAADLGGGRDACPWLLRSAGHAATARVFNAG
SCNVAVSGPDGGYGGYRLERSNLVLWLSRGSTHRTLSNEVALVEAVAARH
PGFVVIVVDFGKATYDSQVLLSRLTKLVVGMHGGAMWNAVRWMDLGAAEP
QFVLEVLPRLGPGASCVLAKMFGVGYSTIACGDCRPERDHIGALPEAELL
AAVGAVLSGTAVTPDCDRI*
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mRNA from alignment at P-wetherbeei_contig5198:2..1080-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5198.1.1 ID=mRNA_P-wetherbeei_contig5198.1.1|Name=mRNA_P-wetherbeei_contig5198.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1079bp|location=Sequence derived from alignment at P-wetherbeei_contig5198:2..1080- (Phaeothamnion wetherbeei SAG_119_79)
CCTGGAAACGCCTCGCCGGACCAATGTGGGGACGACAAGGAGCATTAAAA
CCCACTGTCGCTGGTGGCCACGGACCAGCGACAGCGGCGGACCTCGGCGG
CGGCCGCGACGCCTGTCCGTGGCTGCTCCGCAGCGCGGGCCACGCTGCGA
CGGCGCGGGTGTTCAACGCCGGCTCCTGCAACGTGGCGGTTTCGGGGCCC
GACGGCGGTTACGGCGGCTACCGGCTGGAGCGCTCCAACCTGGTGCTGTG
GCTGTCGCGAGGGTCCACCCACCGAACGCTGTCCAACGAAGTGGCACTGG
TGGAGGCGGTGGCGGCGCGCCACCCGGGCTTTGTCGTCATCGTGGTCGAC
TTCGGCAAAGCGACTTACGACAGCCAGGTGCGTGTGAGGCTGCGGCGGTA
ATGTATTGACGGCAGCAGGGAGCTAGAGTAATGTTTTATTGCTGTTGTTG
TACCCGGCGCTTGTTTGTAAGATTGCTTGTTGCTATGATCATCGCCATTT
TCTGCTTGGTTCTTGCTGCAGCATACCCTTTCCAAGCGCAAGAACATTTC
ATGCCTGAAAGCGATTTTTGACGCCGTGTTGTGACGCAGTCCTTAACGTG
GATGCACCATTTCCTTCTCAAACCTGATCGCTGTCCGTCCGGTTCCGGTT
GTTGCACTCGTCGGCTGCACAGGTGCTGCTGTCGCGGCTGACCAAGCTGG
TGGTCGGCATGCACGGCGGCGCCATGTGGAACGCCGTGCGCTGGATGGAC
CTCGGAGCGGCGGAACCGCAGTTCGTCCTCGAGGTTCTGCCGCGCCTTGG
CCCCGGCGCCTCGTGCGTGCTGGCGAAGATGTTCGGCGTCGGGTACTCGA
CGATCGCGTGCGGCGACTGCCGCCCGGAGCGCGACCACATCGGTGCGCTG
CCCGAGGCGGAGCTGCTGGCGGCGGTCGGCGCGGTGCTCTCAGGAACGGC
CGTCACGCCGGACTGTGACCGGATCTGAGTGCGTATTATTGGTATTCAGA
TAGGATAGAATGTATTATCGGGGCCGGTGGTTTGGGGAGGGACTGCCGGC
CGCGTCTATTGGCAGGATTTCAGGCGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5198:2..1080-

>mRNA_P-wetherbeei_contig5198.1.1 ID=mRNA_P-wetherbeei_contig5198.1.1|Name=mRNA_P-wetherbeei_contig5198.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=660bp|location=Sequence derived from alignment at P-wetherbeei_contig5198:2..1080- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGGGACGACAAGGAGCATTAAAACCCACTGTCGCTGGTGGCCACGG
ACCAGCGACAGCGGCGGACCTCGGCGGCGGCCGCGACGCCTGTCCGTGGC
TGCTCCGCAGCGCGGGCCACGCTGCGACGGCGCGGGTGTTCAACGCCGGC
TCCTGCAACGTGGCGGTTTCGGGGCCCGACGGCGGTTACGGCGGCTACCG
GCTGGAGCGCTCCAACCTGGTGCTGTGGCTGTCGCGAGGGTCCACCCACC
GAACGCTGTCCAACGAAGTGGCACTGGTGGAGGCGGTGGCGGCGCGCCAC
CCGGGCTTTGTCGTCATCGTGGTCGACTTCGGCAAAGCGACTTACGACAG
CCAGGTGCTGCTGTCGCGGCTGACCAAGCTGGTGGTCGGCATGCACGGCG
GCGCCATGTGGAACGCCGTGCGCTGGATGGACCTCGGAGCGGCGGAACCG
CAGTTCGTCCTCGAGGTTCTGCCGCGCCTTGGCCCCGGCGCCTCGTGCGT
GCTGGCGAAGATGTTCGGCGTCGGGTACTCGACGATCGCGTGCGGCGACT
GCCGCCCGGAGCGCGACCACATCGGTGCGCTGCCCGAGGCGGAGCTGCTG
GCGGCGGTCGGCGCGGTGCTCTCAGGAACGGCCGTCACGCCGGACTGTGA
CCGGATCTGA
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