mRNA_P-wetherbeei_contig51972.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51972.1.1
Unique NamemRNA_P-wetherbeei_contig51972.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51972.1.1 vs. uniprot
Match: A0A127F0M5_9HYPH (Cytochrome c, mono-and diheme variants family n=2 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127F0M5_9HYPH)

HSP 1 Score: 143 bits (360), Expect = 8.950e-42
Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    1 MTSMGIKLGLVAIVA-SLGLGQGAALAAS-ADKGKKLYVQYGCWGCHGFEGQGSVATSGGKVLAPEPMAWETFESFVRTTNRTMPPYRESVLPKADLEDIYAFLQTIPKPKDYKSIPLLNQ 357
            MT   ++  L A+ A ++ L  G+A AA  A KGK  + +YGCW CHG+EGQGS  TS GKVLAP+P+ W+TF +FVRTTNR MPP+ E VLP  DL DIYA+L +IPK KDYKSIPLLNQ
Sbjct:    7 MTRSFVRFVLAAVAAGTVALASGSAFAAGDAVKGKANFQKYGCWQCHGYEGQGSAVTSLGKVLAPDPLPWDTFSAFVRTTNRAMPPFSEKVLPNEDLVDIYAYLSSIPKGKDYKSIPLLNQ 127          
BLAST of mRNA_P-wetherbeei_contig51972.1.1 vs. uniprot
Match: A0A1Q7B4E5_9PROT (Cytochrome c domain-containing protein n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7B4E5_9PROT)

HSP 1 Score: 139 bits (349), Expect = 2.230e-40
Identity = 68/109 (62.39%), Postives = 81/109 (74.31%), Query Frame = 1
Query:   31 VAIVASLGLGQGAALAASADKGKKLYVQYGCWGCHGFEGQGSVATSGGKVLAPEPMAWETFESFVRTTNRTMPPYRESVLPKADLEDIYAFLQTIPKPKDYKSIPLLNQ 357
            +A+ A L L  G A AASA+KGK  Y+Q+GCW CHG + QG+     G  LAPEPM  ETF +FVRTTNRTMPPY E++LP  DL DI+A+L+TIPKP DYK IPLLNQ
Sbjct:    1 MALAAGLLLSCGGAFAASAEKGKAAYIQHGCWQCHGMQAQGAAT---GPKLAPEPMPLETFTAFVRTTNRTMPPYAEAILPNEDLADIHAYLETIPKPADYKDIPLLNQ 106          
BLAST of mRNA_P-wetherbeei_contig51972.1.1 vs. uniprot
Match: A0A1Q7BLJ7_9PROT (Cytochrome c domain-containing protein n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BLJ7_9PROT)

HSP 1 Score: 137 bits (345), Expect = 1.190e-39
Identity = 68/111 (61.26%), Postives = 80/111 (72.07%), Query Frame = 1
Query:   25 GLVAIVASLGLGQGAALAASADKGKKLYVQYGCWGCHGFEGQGSVATSGGKVLAPEPMAWETFESFVRTTNRTMPPYRESVLPKADLEDIYAFLQTIPKPKDYKSIPLLNQ 357
            G  A+ A L LG G A AASA+KGK  Y Q+GCW CHG + QG +    G  LAP+P+  E F +FVRTTNR MPPY E++LP  DL DI+A+LQTIPKP DYKSIPLLNQ
Sbjct:    8 GPAALAAGLALGCGGAFAASAEKGKTAYTQHGCWQCHGMQAQGGLT---GPKLAPDPIPIEAFTAFVRTTNRAMPPYSEAILPNDDLADIHAYLQTIPKPADYKSIPLLNQ 115          
BLAST of mRNA_P-wetherbeei_contig51972.1.1 vs. uniprot
Match: A0A537SSQ3_9PROT (Cytochrome c n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SSQ3_9PROT)

HSP 1 Score: 133 bits (335), Expect = 3.950e-38
Identity = 69/114 (60.53%), Postives = 81/114 (71.05%), Query Frame = 1
Query:   16 IKLGLVAIVASLGLGQGAALAASADKGKKLYVQYGCWGCHGFEGQGSVATSGGKVLAPEPMAWETFESFVRTTNRTMPPYRESVLPKADLEDIYAFLQTIPKPKDYKSIPLLNQ 357
            + LG   + A L L  G A+AASA+KGK  ++Q+GCW CHG EGQG  A   G  LAPEPM  ETF +FVRT+NRTMPPY E+VL   DL DI+A+LQ IPK  DYK IPLLNQ
Sbjct:    5 LGLGPAVLAAGLLLSSGGAIAASAEKGKAAFIQHGCWQCHGTEGQGGQA---GARLAPEPMPLETFTAFVRTSNRTMPPYPEAVLSNEDLADIHAYLQAIPKRADYKDIPLLNQ 115          
BLAST of mRNA_P-wetherbeei_contig51972.1.1 vs. uniprot
Match: A0A537NNT8_9PROT (Cytochrome c n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NNT8_9PROT)

HSP 1 Score: 130 bits (327), Expect = 6.500e-37
Identity = 67/115 (58.26%), Postives = 84/115 (73.04%), Query Frame = 1
Query:   13 GIKLGLVAIVASLGLGQGAALAASADKGKKLYVQYGCWGCHGFEGQGSVATSGGKVLAPEPMAWETFESFVRTTNRTMPPYRESVLPKADLEDIYAFLQTIPKPKDYKSIPLLNQ 357
            G  L L A+ A   L  GAA AASA+KGK  +VQ+GCW CHGF+GQG+     G  LAP+P+  E F +FVRTT+R+MPPY E+VL   +L DI+A+LQ+IPKP DYKS+PLLNQ
Sbjct:    4 GTLLALAALAAGAMLHNGAADAASAEKGKAAFVQHGCWQCHGFQGQGANT---GPKLAPDPIPIEPFTAFVRTTDRSMPPYTEAVLSNEELADIHAYLQSIPKPADYKSLPLLNQ 115          
BLAST of mRNA_P-wetherbeei_contig51972.1.1 vs. uniprot
Match: A0A6N7GUB7_9HYPH (C-type cytochrome n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GUB7_9HYPH)

HSP 1 Score: 127 bits (318), Expect = 1.520e-35
Identity = 68/113 (60.18%), Postives = 82/113 (72.57%), Query Frame = 1
Query:   19 KLGLVAIVASLGLGQGAALAASADKGKKLYVQYGCWGCHGFEGQGSVATSGGKVLAPEPMAWETFESFVRTTNRTMPPYRESVLPKADLEDIYAFLQTIPKPKDYKSIPLLNQ 357
            +  L AI A L LG GA  +AS +KGK+L+V+ GCW CHGF GQG VA   G  LAP  M  E   SFVR +NR MPPYRE+VLP+ADL++I+A+L +IPKP D KSIPLLNQ
Sbjct:    7 RFALAAIAAGLVLGFGAGASAS-EKGKQLFVKNGCWQCHGFVGQGGVA---GPALAPNVMPVEAMSSFVRNSNRAMPPYREAVLPEADLKEIHAYLTSIPKPADPKSIPLLNQ 115          
BLAST of mRNA_P-wetherbeei_contig51972.1.1 vs. uniprot
Match: A0A534W1E5_9DELT (Cytochrome c n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534W1E5_9DELT)

HSP 1 Score: 126 bits (316), Expect = 2.970e-35
Identity = 63/109 (57.80%), Postives = 79/109 (72.48%), Query Frame = 1
Query:   28 LVAIVASLGLGQGAALAASADKGKKLYVQYGCWGCHGFEGQGSVATSGGKVLAPEPMAWETFESFVRTTNRTMPPYRESVLPKADLEDIYAFLQTIPKPKDYKSIPLLN 354
            L AIVA L L    A A SA+KGK  YV++GCW CHGF+GQGSVA   G  +AP PM +E F  FVRTT+  MPPY++++L   DL DIYA+LQ++PK +D K+IPLLN
Sbjct:    8 LAAIVAGLVLTSSVAAAGSAEKGKAAYVRHGCWQCHGFDGQGSVA---GSKIAPNPMPFEAFSDFVRTTSGAMPPYQKAILSDDDLADIYAYLQSVPKARDPKTIPLLN 113          
BLAST of mRNA_P-wetherbeei_contig51972.1.1 vs. uniprot
Match: A0A537P639_9PROT (Cytochrome c n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537P639_9PROT)

HSP 1 Score: 125 bits (315), Expect = 5.860e-35
Identity = 70/120 (58.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:    4 TSMGIKLGLVAIVASLG--LGQGAALAASADKGKKLYVQYGCWGCHGFEGQGSVATSGGKVLAPEPMAWETFESFVRTTNRTMPPYRESVLPKADLEDIYAFLQTIPKPKDYKSIPLLNQ 357
            +SM    GLV  V + G  L  G A AASA+KGK  ++Q+GCW CHG +GQGS A   G  LAP+ M  ETF +FVRTTNR MPPY E++L   DLEDI+A+LQTIPKP +  SIPLLNQ
Sbjct:   11 SSMRSVRGLVPAVLAAGVLLSCGGAFAASAEKGKAAFIQHGCWQCHGMQGQGSTA---GPKLAPDAMPIETFTAFVRTTNRAMPPYSEAILSNGDLEDIHAYLQTIPKPAE--SIPLLNQ 125          
BLAST of mRNA_P-wetherbeei_contig51972.1.1 vs. uniprot
Match: A0A536WJY0_9PROT (Cytochrome c n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WJY0_9PROT)

HSP 1 Score: 120 bits (301), Expect = 5.030e-33
Identity = 59/108 (54.63%), Postives = 75/108 (69.44%), Query Frame = 1
Query:   31 VAIVASLGLGQGAALAASADKGKKLYVQYGCWGCHGFEGQGSVATSGGKVLAPEPMAWETFESFVRTTNRTMPPYRESVLPKADLEDIYAFLQTIPKPKDYKSIPLLN 354
            V ++A LG  Q A  A SA+KGK  Y Q+GCW CHGF GQG +    G  LAP+PM  E   +FVR T   MPPY++++L  ADL DI+A+LQ++PK +DYKSIPLLN
Sbjct:    5 VLLLAVLGASQAALAAGSAEKGKTAYAQHGCWQCHGFAGQGGIT---GPKLAPDPMPLEALLAFVRNTRGAMPPYQKAILSDADLADIHAYLQSLPKARDYKSIPLLN 109          
BLAST of mRNA_P-wetherbeei_contig51972.1.1 vs. uniprot
Match: A0A537BK92_9PROT (Cytochrome c n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BK92_9PROT)

HSP 1 Score: 119 bits (298), Expect = 1.440e-32
Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = 1
Query:   37 IVASLGLGQGAALAASADKGKKLYVQYGCWGCHGFEGQGSVATSGGKVLAPEPMAWETFESFVRTTNRTMPPYRESVLPKADLEDIYAFLQTIPKPKDYKSIPLLN 354
            +VA L   Q A  A SADKGK  + ++GCW CHGF GQG VA   G  LAP+PM  E   +FVR T   MPPY++++L  ADL DI+A+LQ++PK +DYKSIPLLN
Sbjct:    7 LVAVLSASQAALAAGSADKGKTAFAKHGCWQCHGFAGQGGVA---GPKLAPDPMPLEAMSAFVRNTRGGMPPYQKAILSDADLADIHAYLQSLPKARDYKSIPLLN 109          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51972.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127F0M5_9HYPH8.950e-4260.33Cytochrome c, mono-and diheme variants family n=2 ... [more]
A0A1Q7B4E5_9PROT2.230e-4062.39Cytochrome c domain-containing protein n=1 Tax=Alp... [more]
A0A1Q7BLJ7_9PROT1.190e-3961.26Cytochrome c domain-containing protein n=1 Tax=Alp... [more]
A0A537SSQ3_9PROT3.950e-3860.53Cytochrome c n=1 Tax=Alphaproteobacteria bacterium... [more]
A0A537NNT8_9PROT6.500e-3758.26Cytochrome c n=1 Tax=Alphaproteobacteria bacterium... [more]
A0A6N7GUB7_9HYPH1.520e-3560.18C-type cytochrome n=1 Tax=Hyphomicrobiales bacteri... [more]
A0A534W1E5_9DELT2.970e-3557.80Cytochrome c n=1 Tax=Deltaproteobacteria bacterium... [more]
A0A537P639_9PROT5.860e-3558.33Cytochrome c n=2 Tax=Alphaproteobacteria bacterium... [more]
A0A536WJY0_9PROT5.030e-3354.63Cytochrome c n=1 Tax=Betaproteobacteria bacterium ... [more]
A0A537BK92_9PROT1.440e-3255.66Cytochrome c n=1 Tax=Betaproteobacteria bacterium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51972contigP-wetherbeei_contig51972:165..524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog234267.Acid_6849
PFAMsCytochrome_CBB3,DHC
Model size360
Max annot lvl2|Bacteria
KEGG koko:K17760
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.02e-13
EggNOG OGsCOG2010@1|root,COG2010@2|Bacteria
EC1.1.9.1
DescriptionCytochrome c
Cds size360
COG categoryC
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186779.6739635-CDS-P-wetherbeei_contig51972:164..5241683186779.6739635-CDS-P-wetherbeei_contig51972:164..524Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51972 165..524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51972.1.1prot_P-wetherbeei_contig51972.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51972 165..524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51972.1.1

>prot_P-wetherbeei_contig51972.1.1 ID=prot_P-wetherbeei_contig51972.1.1|Name=mRNA_P-wetherbeei_contig51972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
MTSMGIKLGLVAIVASLGLGQGAALAASADKGKKLYVQYGCWGCHGFEGQ
GSVATSGGKVLAPEPMAWETFESFVRTTNRTMPPYRESVLPKADLEDIYA
FLQTIPKPKDYKSIPLLNQ*
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mRNA from alignment at P-wetherbeei_contig51972:165..524-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51972.1.1 ID=mRNA_P-wetherbeei_contig51972.1.1|Name=mRNA_P-wetherbeei_contig51972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig51972:165..524- (Phaeothamnion wetherbeei SAG_119_79)
ATGACATCGATGGGAATCAAATTGGGGCTGGTGGCGATTGTCGCCAGCCT GGGACTCGGTCAGGGCGCGGCGCTCGCCGCGTCGGCCGACAAGGGCAAAA AGCTGTATGTCCAATATGGCTGCTGGGGCTGCCATGGCTTCGAAGGTCAG GGCTCTGTCGCGACCTCGGGCGGCAAGGTGCTGGCGCCGGAGCCGATGGC CTGGGAGACCTTCGAGAGTTTCGTGCGCACCACCAACCGCACGATGCCGC CTTATCGCGAATCGGTGCTGCCGAAGGCGGATCTGGAGGACATTTACGCC TTCCTGCAAACGATTCCGAAGCCGAAGGACTATAAGTCGATCCCGCTGCT GAACCAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51972:165..524-

>mRNA_P-wetherbeei_contig51972.1.1 ID=mRNA_P-wetherbeei_contig51972.1.1|Name=mRNA_P-wetherbeei_contig51972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig51972:165..524- (Phaeothamnion wetherbeei SAG_119_79)
ATGACATCGATGGGAATCAAATTGGGGCTGGTGGCGATTGTCGCCAGCCT
GGGACTCGGTCAGGGCGCGGCGCTCGCCGCGTCGGCCGACAAGGGCAAAA
AGCTGTATGTCCAATATGGCTGCTGGGGCTGCCATGGCTTCGAAGGTCAG
GGCTCTGTCGCGACCTCGGGCGGCAAGGTGCTGGCGCCGGAGCCGATGGC
CTGGGAGACCTTCGAGAGTTTCGTGCGCACCACCAACCGCACGATGCCGC
CTTATCGCGAATCGGTGCTGCCGAAGGCGGATCTGGAGGACATTTACGCC
TTCCTGCAAACGATTCCGAAGCCGAAGGACTATAAGTCGATCCCGCTGCT
GAACCAATAA
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