mRNA_P-wetherbeei_contig51963.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51963.1.1
Unique NamemRNA_P-wetherbeei_contig51963.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51963.1.1 vs. uniprot
Match: A0A346A344_9HYPH (AsmA family protein n=2 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A344_9HYPH)

HSP 1 Score: 250 bits (639), Expect = 6.010e-74
Identity = 115/182 (63.19%), Postives = 147/182 (80.77%), Query Frame = 1
Query:    1 DARLLPSPRLTLNDLEVGSGDGKILVRSLALELALTPLMRGEWRATELHLSGPQVTLRVDADGKMQTPGLAMAFSPDTLAVERLSIEDGKVSIVDAASGGTVALNRFWFNGEAKSLIGPFKGEGAVTISDELYPFRLSTGRYSDEGALKLRVNVDPVNRPLSIETDGVLTLSEGAPHFDGTV 546
            DARLLPSP+LTL D+E+G G   +  RSL +E AL PLMRGEWRA+++HL GPQV+L +DA G++Q P LA++F PD L++ERLSIEDG+V++VDAA+GG + L++ WFNGEA+SL+GPFKGEGAV +  ELYP+R+ST RYSDE  LKLR+NVDPV RPL+IE DG L L+   P FDG +
Sbjct:   56 DARLLPSPQLTLYDIEIGEGGRAVRARSLGIEFALGPLMRGEWRASDMHLVGPQVSLGLDAKGQVQAPSLAVSFDPDALSIERLSIEDGRVTLVDAANGGNIVLDKLWFNGEARSLVGPFKGEGAVRMDGELYPYRISTARYSDENGLKLRLNVDPVARPLAIEVDGALALAGDTPRFDGNL 237          
BLAST of mRNA_P-wetherbeei_contig51963.1.1 vs. uniprot
Match: A0A0Q7TIW8_9HYPH (Uncharacterized protein n=2 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TIW8_9HYPH)

HSP 1 Score: 240 bits (612), Expect = 3.450e-70
Identity = 117/195 (60.00%), Postives = 152/195 (77.95%), Query Frame = 1
Query:    1 DARLLPSPRLTLNDLEVGSGDGK-------------ILVRSLALELALTPLMRGEWRATELHLSGPQVTLRVDADGKMQTPGLAMAFSPDTLAVERLSIEDGKVSIVDAASGGTVALNRFWFNGEAKSLIGPFKGEGAVTISDELYPFRLSTGRYSDEGALKLRVNVDPVNRPLSIETDGVLTLSEGAPHFDGTV 546
            D RLLPSPRLTLND+++G+ DGK             I  RSL +E AL PL+RG+WRATEL ++GP+V LR DA G ++TPGL+ AF+ D LA+++LSIEDG V++ +A  G T++L R WFNGEA+SL+GPFKGEGA TI  ELYP+RLS+GRY ++G +K+R+NVDPVNRPLSIET+GVLTL+ G P F+GT+
Sbjct:   47 DLRLLPSPRLTLNDIQIGAADGKQAGTPAAKGADETIRARSLGIEFALAPLLRGDWRATELTVAGPRVNLRTDAAGHVRTPGLSFAFNADDLAIDKLSIEDGTVTVAEA-DGATLSLERVWFNGEARSLLGPFKGEGAATIGGELYPYRLSSGRYGEDGTVKVRLNVDPVNRPLSIETEGVLTLA-GVPQFEGTL 239          
BLAST of mRNA_P-wetherbeei_contig51963.1.1 vs. uniprot
Match: UPI0010BEB513 (AsmA family protein n=1 Tax=Pseudolabrys sp. FHR47 TaxID=2562284 RepID=UPI0010BEB513)

HSP 1 Score: 237 bits (604), Expect = 4.190e-69
Identity = 119/193 (61.66%), Postives = 145/193 (75.13%), Query Frame = 1
Query:    1 DARLLPSPRLTLNDLEVGSGDG-----------KILVRSLALELALTPLMRGEWRATELHLSGPQVTLRVDADGKMQTPGLAMAFSPDTLAVERLSIEDGKVSIVDAASGGTVALNRFWFNGEAKSLIGPFKGEGAVTISDELYPFRLSTGRYSDEGALKLRVNVDPVNRPLSIETDGVLTLSEGAPHFDGTV 546
            D RLLPSPRLTLND++VG+               +  RSL +E AL PLMRGEWRATE  +SGP+V L  DA G++ TPG+A AF+P  LA+E+LSIEDGK S+ +   GG V L R WFNG+A+SLIGP KGEGAVTI +ELYPFRLSTGRY D+  LKL++N+DPVNRPLSIETDGVL+L + AP F+GT+
Sbjct:   54 DLRLLPSPRLTLNDIQVGASPSVAQAKPQPEGASVKARSLGVEFALGPLMRGEWRATEFTISGPEVHLIADAAGQVSTPGIAFAFNPGDLAIEKLSIEDGKFSVANP-DGGAVTLERLWFNGDARSLIGPLKGEGAVTIDNELYPFRLSTGRYGDDDTLKLKINIDPVNRPLSIETDGVLSLKD-APQFEGTL 244          
BLAST of mRNA_P-wetherbeei_contig51963.1.1 vs. uniprot
Match: A0A371BBM4_9HYPH (AsmA family protein n=1 Tax=Pseudolabrys sp. GY_H TaxID=2292256 RepID=A0A371BBM4_9HYPH)

HSP 1 Score: 236 bits (601), Expect = 1.040e-68
Identity = 120/193 (62.18%), Postives = 144/193 (74.61%), Query Frame = 1
Query:    1 DARLLPSPRLTLNDLEVGSGD-----------GKILVRSLALELALTPLMRGEWRATELHLSGPQVTLRVDADGKMQTPGLAMAFSPDTLAVERLSIEDGKVSIVDAASGGTVALNRFWFNGEAKSLIGPFKGEGAVTISDELYPFRLSTGRYSDEGALKLRVNVDPVNRPLSIETDGVLTLSEGAPHFDGTV 546
            D RLLPSPRLTLND++VG+               +  RSL +E AL PL+RGEW ATEL + GP+V L  DA+G++ TPG+A AF+P  LA+E+LSIEDGK SI +   G  V  +R WFNG+A+SLIGP KGEGAVTI DELYPFRLSTGRY D+  LKL++NVDPVNRPLSIETDGVLTL + AP FDGT+
Sbjct:   54 DLRLLPSPRLTLNDIQVGASAPAAQAGSQPQAASVKARSLGVEFALGPLLRGEWHATELTVGGPEVRLVTDANGQVGTPGIAFAFNPGDLAIEKLSIEDGKFSIANP-DGAAVTFDRVWFNGDARSLIGPLKGEGAVTIGDELYPFRLSTGRYGDDDTLKLKINVDPVNRPLSIETDGVLTLKD-APQFDGTL 244          
BLAST of mRNA_P-wetherbeei_contig51963.1.1 vs. uniprot
Match: A0A1Q4DEN5_9HYPH (Uncharacterized protein n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DEN5_9HYPH)

HSP 1 Score: 196 bits (497), Expect = 1.350e-54
Identity = 89/180 (49.44%), Postives = 129/180 (71.67%), Query Frame = 1
Query:    1 DARLLPSPRLTLNDLEVGSGDGKILVRSLALELALTPLMRGEWRATELHLSGPQVTLRVDADGKMQTPGLAMAFSPDTLAVERLSIEDGKVSIVDAASGGTVALNRFWFNGEAKSLIGPFKGEGAVTISDELYPFRLSTGRYSDEGALKLRVNVDPVNRPLSIETDGVLTLSEGAPHFDG 540
            D RLLPSP+LTL D+ V      +  R +++ELAL  LMRGEWRAT+LH+  PQ+   +D  GK++ PG A +F P+ L+++RL +E+G++ + DA SG    L+  WFNG+A+SL GP +GEGA T+  E+YP+RLS  R SD G+ ++R+NVDP NRPL++E DG ++L++G P F+G
Sbjct:   54 DVRLLPSPQLTLRDVTVSG----VRARVISIELALGSLMRGEWRATDLHVVAPQLETGIDQAGKLRWPGAAASFDPNALSIDRLHVEEGRLVLTDAGSGARRVLDGIWFNGDARSLAGPVRGEGAATLDGEIYPYRLSVSRVSDAGSARVRLNVDPQNRPLTLEADGEVSLAQGTPRFEG 229          
BLAST of mRNA_P-wetherbeei_contig51963.1.1 vs. uniprot
Match: A0A6L5FP06_9HYPH (AsmA family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FP06_9HYPH)

HSP 1 Score: 184 bits (468), Expect = 1.100e-50
Identity = 88/184 (47.83%), Postives = 128/184 (69.57%), Query Frame = 1
Query:    1 DARLLPSPRLTLNDLEVGS--GDGKILVRSLALELALTPLMRGEWRATELHLSGPQVTLRVDADGKMQTPGLAMAFSPDTLAVERLSIEDGKVSIVDAASGGTVALNRFWFNGEAKSLIGPFKGEGAVTISDELYPFRLSTGRYSDEGALKLRVNVDPVNRPLSIETDGVLTLSEGAPHFDGTV 546
            DARLLPSP LTL+ LE+G+  GD  +  R L +E AL  LMRGE RA E  ++GP+VT+ +DA G +  P L+  F PD+L++ERL+IEDG+  +V+AA+G     ++ WFNG+ +SL GPFKGEGA   S ELY +R++ GR  ++G L++R+++DP +R L+ E +G L +    P F+GT+
Sbjct:   54 DARLLPSPSLTLHGLEIGNPNGDQTLQARLLNIEFALGSLMRGELRAVEAQVAGPEVTVAIDAAGSLDLPKLSAGFVPDSLSIERLNIEDGRAHLVNAATGRRTTFDKVWFNGDLRSLAGPFKGEGAFVASGELYGYRVAAGRLGEDGTLRVRLSLDPSDRLLAAEAEGSLIVGRAKPRFEGTI 237          
BLAST of mRNA_P-wetherbeei_contig51963.1.1 vs. uniprot
Match: A0A327KWJ3_9HYPH (Uncharacterized protein n=2 Tax=Rhodoplanes roseus TaxID=29409 RepID=A0A327KWJ3_9HYPH)

HSP 1 Score: 175 bits (444), Expect = 1.840e-47
Identity = 84/180 (46.67%), Postives = 116/180 (64.44%), Query Frame = 1
Query:    7 RLLPSPRLTLNDLEVGSGDGKILVRSLALELALTPLMRGEWRATELHLSGPQVTLRVDADGKMQTPGLAMAFSPDTLAVERLSIEDGKVSIVDAASGGTVALNRFWFNGEAKSLIGPFKGEGAVTISDELYPFRLSTGRYSDEGALKLRVNVDPVNRPLSIETDGVLTLSEGAPHFDGTV 546
            RLLP+P L L  + + +G  ++  R++ +ELAL PLMRG+WR  EL L  PQ+ L +D  G++  P L   F PD L+VERL +E+G+  + DA+SGG V L+   F G+ +SL GP +GEGA      LY  RLS GR   +G ++LR+NVDP++RPL +ETDG L L    P FDG +
Sbjct:   45 RLLPTPSLDLGSVALSAGGTRLSTRAMRVELALGPLMRGQWRVAELTLDAPQLDLTLDGAGRIGAPALPAGFDPDMLSVERLVVENGRAVLADASSGGNVTLDNVVFKGDLRSLAGPLRGEGAFVTGGTLYGVRLSAGRAGADGGVRLRLNVDPLDRPLLVETDGTLWLGGPTPRFDGAL 224          
BLAST of mRNA_P-wetherbeei_contig51963.1.1 vs. uniprot
Match: A0A537LAG6_9PROT (AsmA family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537LAG6_9PROT)

HSP 1 Score: 175 bits (443), Expect = 2.500e-47
Identity = 86/183 (46.99%), Postives = 124/183 (67.76%), Query Frame = 1
Query:    1 DARLLPSPRLTLNDLEVGS-GDGKILVRSLALELALTPLMRGEWRATELHLSGPQVTLRVDADGKMQTPGLAMAFSPDTLAVERLSIEDGKVSIVDAASGGTVALNRFWFNGEAKSLIGPFKGEGAVTISDELYPFRLSTGRYSDEGALKLRVNVDPVNRPLSIETDGVLTLSEGAPHFDGTV 546
            D R+LP+P LTL  +E GS       VR L  ELAL  LMRG  RA+EL ++GP++++ V A+G+   P L + F P+   +++L+I+DG++   DAASG TV+L   WFNG+ +SL+GP KGEG    + E Y +RL+T R  D+G++KLR+ +DP +RPL+IE DG L L + +P F+GTV
Sbjct:   54 DVRILPTPTLTLGRVEFGSVSQPHAKVRELHAELALGSLMRGAVRASELRVAGPELSIGVAANGRADLPVLRVGFDPEQFLIDKLAIDDGRLVFADAASGTTVSLQGLWFNGDLRSLLGPAKGEGGFIAAGERYGYRLATSRVGDDGSVKLRLALDPSDRPLAIEADGALRLEDSSPRFEGTV 236          
BLAST of mRNA_P-wetherbeei_contig51963.1.1 vs. uniprot
Match: A0A3S4CHV3_9HYPH (Uncharacterized protein n=2 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A3S4CHV3_9HYPH)

HSP 1 Score: 172 bits (435), Expect = 2.980e-46
Identity = 81/180 (45.00%), Postives = 116/180 (64.44%), Query Frame = 1
Query:    7 RLLPSPRLTLNDLEVGSGDGKILVRSLALELALTPLMRGEWRATELHLSGPQVTLRVDADGKMQTPGLAMAFSPDTLAVERLSIEDGKVSIVDAASGGTVALNRFWFNGEAKSLIGPFKGEGAVTISDELYPFRLSTGRYSDEGALKLRVNVDPVNRPLSIETDGVLTLSEGAPHFDGTV 546
            R+LP+P L L  + V +G  ++  R+L +ELAL PLMRGEWR  EL L  PQ+ L +D  G++  P L   F P+ L+++RL IE G+  + D ASGG++ L+   F G+ +SL GP +GEGA      LY  RL+TGR   +GA++LR  +DP++RPL++E DGVL L    P ++G V
Sbjct:   56 RVLPTPSLDLGGVSVAAGGTRVSARALRVELALAPLMRGEWRVAELALDAPQLALALDPGGRLAAPSLPAGFDPERLSIDRLVIEHGRAVLADPASGGSLTLDNLTFKGDLRSLAGPLRGEGAFVTGGTLYGVRLATGRPGPDGAVRLRFGLDPLDRPLTVEADGVLRLDTPGPRWEGGV 235          
BLAST of mRNA_P-wetherbeei_contig51963.1.1 vs. uniprot
Match: UPI001799C0D3 (AsmA family protein n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI001799C0D3)

HSP 1 Score: 166 bits (421), Expect = 2.270e-44
Identity = 78/180 (43.33%), Postives = 116/180 (64.44%), Query Frame = 1
Query:    7 RLLPSPRLTLNDLEVGSGDGKILVRSLALELALTPLMRGEWRATELHLSGPQVTLRVDADGKMQTPGLAMAFSPDTLAVERLSIEDGKVSIVDAASGGTVALNRFWFNGEAKSLIGPFKGEGAVTISDELYPFRLSTGRYSDEGALKLRVNVDPVNRPLSIETDGVLTLSEGAPHFDGTV 546
            R+LP+P L L  + + +G  ++  RSL +ELAL PL+RGEWR  EL +  PQ+ L +D  G++  P L   F  + L+++RL IE+G+  + DA SGG+V+L+   F G+ +SL GP +GEGA      LY  RL TGR   +G +++R+N+DP++RPL +E DG L L   AP F+G +
Sbjct:   56 RVLPTPSLDLAGVALAAGGTRLSARSLRVELALGPLLRGEWRVAELTVDAPQLDLSLDGSGRIGAPALPAGFDTERLSIDRLVIENGRAVLSDAVSGGSVSLDSIVFKGDLRSLAGPLRGEGAFVSGGTLYGVRLGTGRQGADGGIRVRLNIDPLDRPLLVEADGTLWLGGAAPRFEGAL 235          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51963.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A346A344_9HYPH6.010e-7463.19AsmA family protein n=2 Tax=Pseudolabrys taiwanens... [more]
A0A0Q7TIW8_9HYPH3.450e-7060.00Uncharacterized protein n=2 Tax=Pseudolabrys sp. R... [more]
UPI0010BEB5134.190e-6961.66AsmA family protein n=1 Tax=Pseudolabrys sp. FHR47... [more]
A0A371BBM4_9HYPH1.040e-6862.18AsmA family protein n=1 Tax=Pseudolabrys sp. GY_H ... [more]
A0A1Q4DEN5_9HYPH1.350e-5449.44Uncharacterized protein n=1 Tax=Rhizobiales bacter... [more]
A0A6L5FP06_9HYPH1.100e-5047.83AsmA family protein n=1 Tax=Hyphomicrobiales bacte... [more]
A0A327KWJ3_9HYPH1.840e-4746.67Uncharacterized protein n=2 Tax=Rhodoplanes roseus... [more]
A0A537LAG6_9PROT2.500e-4746.99AsmA family protein n=1 Tax=Alphaproteobacteria ba... [more]
A0A3S4CHV3_9HYPH2.980e-4645.00Uncharacterized protein n=2 Tax=Rhodoplanes piscin... [more]
UPI001799C0D32.270e-4443.33AsmA family protein n=1 Tax=Rhodoplanes sp. TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51963contigP-wetherbeei_contig51963:3..548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1297865.APJD01000006_gene4624
Preferred nameasmA
PFAMsAsmA,AsmA_2
Model size546
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07289
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.05e-38
EggNOG OGsCOG2982@1|root,COG2982@2|Bacteria,1MUNH@1224|Proteobacteria,2TT0W@28211|Alphaproteobacteria,3JRU3@41294|Bradyrhizobiaceae
DescriptionAsmA-like C-terminal region
Cds size546
COG categoryM
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186779.5877163-CDS-P-wetherbeei_contig51963:2..5481683186779.5877163-CDS-P-wetherbeei_contig51963:2..548Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51963 3..548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51963.1.1prot_P-wetherbeei_contig51963.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51963 3..548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51963.1.1

>prot_P-wetherbeei_contig51963.1.1 ID=prot_P-wetherbeei_contig51963.1.1|Name=mRNA_P-wetherbeei_contig51963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp
DARLLPSPRLTLNDLEVGSGDGKILVRSLALELALTPLMRGEWRATELHL
SGPQVTLRVDADGKMQTPGLAMAFSPDTLAVERLSIEDGKVSIVDAASGG
TVALNRFWFNGEAKSLIGPFKGEGAVTISDELYPFRLSTGRYSDEGALKL
RVNVDPVNRPLSIETDGVLTLSEGAPHFDGTV
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mRNA from alignment at P-wetherbeei_contig51963:3..548-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51963.1.1 ID=mRNA_P-wetherbeei_contig51963.1.1|Name=mRNA_P-wetherbeei_contig51963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig51963:3..548- (Phaeothamnion wetherbeei SAG_119_79)
GACGCGCGGCTGCTGCCGTCGCCCCGGCTCACGCTCAACGATCTGGAAGT CGGCAGCGGCGACGGCAAAATTCTCGTCCGCTCGCTCGCTCTCGAACTGG CGCTGACGCCCTTGATGCGCGGCGAGTGGCGGGCGACGGAGCTGCATCTC TCGGGGCCGCAGGTGACGTTGCGTGTCGATGCCGACGGCAAAATGCAGAC GCCCGGCCTGGCGATGGCATTCTCCCCCGACACGCTCGCGGTCGAGCGGC TGAGCATCGAAGACGGCAAGGTATCGATCGTCGACGCCGCCAGCGGCGGC ACCGTTGCGCTCAACCGCTTCTGGTTCAACGGCGAAGCGAAGTCGCTGAT CGGGCCGTTCAAGGGCGAAGGCGCCGTCACCATCAGCGACGAGCTGTATC CGTTCCGCCTGTCGACTGGGCGCTACAGCGACGAAGGCGCGCTCAAGCTT CGCGTCAATGTCGATCCGGTCAATCGCCCGCTCAGTATCGAGACCGACGG CGTACTGACCTTGAGCGAAGGCGCGCCGCATTTCGACGGCACCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51963:3..548-

>mRNA_P-wetherbeei_contig51963.1.1 ID=mRNA_P-wetherbeei_contig51963.1.1|Name=mRNA_P-wetherbeei_contig51963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig51963:3..548- (Phaeothamnion wetherbeei SAG_119_79)
GACGCGCGGCTGCTGCCGTCGCCCCGGCTCACGCTCAACGATCTGGAAGT
CGGCAGCGGCGACGGCAAAATTCTCGTCCGCTCGCTCGCTCTCGAACTGG
CGCTGACGCCCTTGATGCGCGGCGAGTGGCGGGCGACGGAGCTGCATCTC
TCGGGGCCGCAGGTGACGTTGCGTGTCGATGCCGACGGCAAAATGCAGAC
GCCCGGCCTGGCGATGGCATTCTCCCCCGACACGCTCGCGGTCGAGCGGC
TGAGCATCGAAGACGGCAAGGTATCGATCGTCGACGCCGCCAGCGGCGGC
ACCGTTGCGCTCAACCGCTTCTGGTTCAACGGCGAAGCGAAGTCGCTGAT
CGGGCCGTTCAAGGGCGAAGGCGCCGTCACCATCAGCGACGAGCTGTATC
CGTTCCGCCTGTCGACTGGGCGCTACAGCGACGAAGGCGCGCTCAAGCTT
CGCGTCAATGTCGATCCGGTCAATCGCCCGCTCAGTATCGAGACCGACGG
CGTACTGACCTTGAGCGAAGGCGCGCCGCATTTCGACGGCACCGTC
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