mRNA_P-wetherbeei_contig51939.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51939.1.1
Unique NamemRNA_P-wetherbeei_contig51939.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51939.1.1 vs. uniprot
Match: A0A3C1DKW8_9ACTN (Zn peptidase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3C1DKW8_9ACTN)

HSP 1 Score: 113 bits (282), Expect = 3.850e-28
Identity = 65/152 (42.76%), Postives = 87/152 (57.24%), Query Frame = 1
Query:    1 IAEVQAARLLREAGLDGPAVDVAALGELLGVRTMSGTDLPASGLATETDDGWAIVLAAGDPPTRRRFSLAHELKHIIDDPFIDWLYPGYGAFSTDLLAERAADQFAAALLMPKAWIKRDWGDRHQDLRRLAARYGVSMSAMNVRLGEFGLSK 456
            +AE QA RLL+  G  GPAVDV+ + EL  +      +L  SG +      W + +   D   RRRF+LAHE KHI+D+PFI   Y        +  AE+  D FAA LLMP+ WIKR+W +  QD   LA  + VS SAM +RL + GL++
Sbjct:   29 VAEKQAMRLLQILGQTGPAVDVSLIAELPRIEVRVEPNLVVSGFSQWNRGRWLLAVNRDDSLVRRRFTLAHEFKHILDNPFIGHAYLDRTGKPDEAFAEKICDYFAACLLMPRPWIKREWINGLQDQALLAQLFNVSESAMAIRLRQIGLAE 180          
BLAST of mRNA_P-wetherbeei_contig51939.1.1 vs. uniprot
Match: UPI001C3D9026 (ImmA/IrrE family metallo-endopeptidase n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3D9026)

HSP 1 Score: 109 bits (273), Expect = 8.290e-27
Identity = 64/151 (42.38%), Postives = 86/151 (56.95%), Query Frame = 1
Query:    1 IAEVQAARLLREAGLDGPAVDVAALGELLGVRTMSGTDLPASGLATETDDGWAIVLAAGDPPTRRRFSLAHELKHIIDDPFIDWLYPGYGAFSTDLLAERAADQFAAALLMPKAWIKRDWGDRHQDLRRLAARYGVSMSAMNVRLGEFGLS 453
            IAE QA +LL       PAV+VAA+ EL  +       LP SG +  +   W I +   D P RRRF+LAHE KH++D PFID  Y       ++  AE   D FAA LLMP+ W+K+ W    Q+ R LA  +GVS +AM +RL + G++
Sbjct:   32 IAERQALKLLGLLDQHQPAVNVAAIAELPRIEVRVEPKLPISGFSQWSRGRWLIGINEDDAPVRRRFTLAHEFKHVLDHPFIDRAYVDRRGRPSEARAEAICDYFAACLLMPRPWVKQAWVGGIQEQRALAQLFGVSEAAMALRLRQLGIT 182          
BLAST of mRNA_P-wetherbeei_contig51939.1.1 vs. uniprot
Match: UPI0010412867 (ImmA/IrrE family metallo-endopeptidase n=1 Tax=Candidatus Frankia datiscae TaxID=2716812 RepID=UPI0010412867)

HSP 1 Score: 109 bits (272), Expect = 1.010e-26
Identity = 65/164 (39.63%), Postives = 93/164 (56.71%), Query Frame = 1
Query:    1 IAEVQAARLLREAGLDGPAVDVAALGELLGVRTMSGTDLPA---SGLATETDDGWAIVLAAGDPPTRRRFSLAHELKHIIDDPFIDWLYP--GYGAFSTDLLAERAADQFAAALLMPKAWIKRDWGDRHQDLRRLAARYGVSMSAMNVRLGEFGLSKIDVGHGR 477
            +AE QA +LL       P+V+++ + EL  V+     +L A   SG+A  +   W IV++  D PTRRRF+L+HE KH++D PF+  +Y   G      D   E+  D FA  LLMP+ W+KR W +  QD   LAA + VS +AM VRL + GL++    H R
Sbjct:   29 VAERQAIKLLELLSQHEPSVNISLITELPHVQVKVEPNLKAAGISGIAQWSRGRWLIVVSRDDSPTRRRFTLSHEFKHVLDHPFVSVIYSELGENEVDRDRATEQICDYFAGCLLMPRNWVKRAWANGIQDQAALAAMFDVSEAAMAVRLRQIGLTEPSTRHAR 192          
BLAST of mRNA_P-wetherbeei_contig51939.1.1 vs. uniprot
Match: UPI0010410AAE (ImmA/IrrE family metallo-endopeptidase n=1 Tax=Frankia symbiont of Coriaria ruscifolia TaxID=1306542 RepID=UPI0010410AAE)

HSP 1 Score: 108 bits (270), Expect = 2.060e-26
Identity = 68/166 (40.96%), Postives = 92/166 (55.42%), Query Frame = 1
Query:    1 IAEVQAARLLREAGLDGPAVDVAALGEL--LGVRTMSGTDLPASG---LATETDDGWAIVLAAGDPPTRRRFSLAHELKHIIDDPFIDWLYPGYGAFSTDL--LAERAADQFAAALLMPKAWIKRDWGDRHQDLRRLAARYGVSMSAMNVRLGEFGLSKIDVGHGR 477
            +AE QA +LL   G   P+V+V+ + EL  L V+      L ASG    A  +   W +V+   D PTRRRF+L+HE KH++D PF+  +Y   G    +   + ER  D FA  LLMP+ WIKR W +  QD   LAA + VS  AM VRL + GL++    H R
Sbjct:   29 VAERQAIKLLELLGQHEPSVNVSLIAELPRLEVKVKRSQHLTASGTSGFAQWSRGRWLVVVNRDDAPTRRRFTLSHEFKHVLDHPFVSVIYSNLGENEDERNDMTERICDYFAGCLLMPRNWIKRAWANGVQDQATLAAMFDVSEMAMAVRLRQIGLTEPRTRHAR 194          
BLAST of mRNA_P-wetherbeei_contig51939.1.1 vs. uniprot
Match: UPI0018784F71 (ImmA/IrrE family metallo-endopeptidase n=1 Tax=Thermobifida fusca TaxID=2021 RepID=UPI0018784F71)

HSP 1 Score: 107 bits (267), Expect = 5.780e-26
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 1
Query:    1 IAEVQAARLLREAGLDGPAVDVAALGELLGVRTMSGTDLPASGLA--TETDDG-WAIVLAAGDPPTRRRFSLAHELKHIIDDPFIDWLYPGYG--AFSTDLLAERAADQFAAALLMPKAWIKRDWGDRHQDLRRLAARYGVSMSAMNVRLGEFGL 450
            IAE QA +LL+  G + PAVDV  + EL  V      +L   G++  ++   G W +V+   D PTRRRF+L+HE KH++D PFI  +Y   G  A   +   E+  D FA  LLMP+ W+KR W +  QD   LAA + VS +AM VRL + GL
Sbjct:   29 IAERQATKLLQLLGQNEPAVDVGLIAELPRVEVKVEPNLHVGGMSGFSQWSRGRWLVVVNRDDSPTRRRFTLSHEFKHVLDHPFIKVIYNDLGKDAAERERQIEQLCDYFAGCLLMPRNWLKRAWANGVQDQAALAAMFNVSEAAMAVRLQQIGL 183          
BLAST of mRNA_P-wetherbeei_contig51939.1.1 vs. uniprot
Match: A0A359A5S2_9ACTN (Peptidase_M78 domain-containing protein (Fragment) n=1 Tax=Candidatus Microthrix parvicella TaxID=41950 RepID=A0A359A5S2_9ACTN)

HSP 1 Score: 97.1 bits (240), Expect = 8.200e-23
Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:  154 WAIVLAAGDPPTRRRFSLAHELKHIIDDPFIDWLYPGYGAFSTDLLAERAADQFAAALLMPKAWIKRDWGDRHQDLRRLAARYGVSMSAMNVRLGEFGLS 453
            W I +   D  TRRRF+LAHELKH++D+P+I+ LYPG     +   AE   D FAA LLMP+  +K  WG  +Q    LAA +GVS +AM +RL + GL+
Sbjct:    2 WVIAINGDDHWTRRRFTLAHELKHVLDNPYIEMLYPGRDGAPSGQRAETICDYFAACLLMPRLSVKAAWGQGNQRPDDLAAHFGVSRAAMGLRLHQLGLT 101          
BLAST of mRNA_P-wetherbeei_contig51939.1.1 vs. uniprot
Match: A0A1C3P451_9ACTN (Peptidase_M78 domain-containing protein n=2 Tax=Frankia TaxID=1854 RepID=A0A1C3P451_9ACTN)

HSP 1 Score: 97.8 bits (242), Expect = 3.080e-22
Identity = 63/164 (38.41%), Postives = 89/164 (54.27%), Query Frame = 1
Query:    1 IAEVQAARLLREAGLDGPAVDVAALGELLGVRTMSGTDLPASGLA--TETDDG-WAIVLAAGDPPTRRRFSLAHELKHIIDDPFIDWLYPGYGAFSTDL--LAERAADQFAAALLMPKAWIKRDWGDRHQDLRRLAARYGVSMSAMNVRLGEFGLSKIDVGHGR 477
            +AE QA  LL   G   PAVDV  + EL  +      +L   G++  ++   G W IV+   D  TRRRF+L+HELKHI+D PF   LY        +   + ER  D FA  LL+P+ W+K+ W +  QD   LAA + VS +A++VRL + G+ +    H R
Sbjct:   29 LAERQAIILLELLGQHRPAVDVGLIAELPRIEVRVELNLHKGGISGFSQWSQGRWLIVVNRSDSTTRRRFTLSHELKHILDHPFAKVLYSNLSDAEAERERIIERICDYFAGCLLVPRNWLKQAWANGIQDRAALAALFNVSEAAISVRLQQTGIGEPRTAHHR 192          
BLAST of mRNA_P-wetherbeei_contig51939.1.1 vs. uniprot
Match: R4Z3X2_9ACTN (Peptidase_M78 domain-containing protein n=2 Tax=Candidatus Microthrix parvicella TaxID=41950 RepID=R4Z3X2_9ACTN)

HSP 1 Score: 96.3 bits (238), Expect = 8.480e-22
Identity = 60/150 (40.00%), Postives = 80/150 (53.33%), Query Frame = 1
Query:    1 IAEVQAARLLREAGLDGPAVDVAALGELLGVRTMSGTDLPASGLATETDDGWAIVLAAGDPPTRRRFSLAHELKHIIDDPFIDWLYPGYGAFSTDLLAERAADQFAAALLMPKAWIKRDWGDRHQDLRRLAARYGVSMSAMNVRLGEFGL 450
            +AE+QA RL +   +D P +    + E+  +      +LPASG        W I L   + P RRRFSL HE KHIID      LY   G  +    AE+AAD FAA  LMPK W+KR WG+  Q +  LA  + VS +A+  RL + G+
Sbjct:   32 VAELQANRLRQHFDIDCPTLPSDVIFEMPRIAVRVDHELPASGTTHWDGRRWIITLNGSESPLRRRFSLFHEFKHIIDHHARINLYGPDGDRAAAQRAEQAADYFAACALMPKRWVKRLWGEGTQAIPALADSFEVSTAALRFRLDQLGV 181          
BLAST of mRNA_P-wetherbeei_contig51939.1.1 vs. uniprot
Match: A0A6G2X949_9ACTN (ImmA/IrrE family metallo-endopeptidase n=2 Tax=Streptomyces TaxID=1883 RepID=A0A6G2X949_9ACTN)

HSP 1 Score: 96.3 bits (238), Expect = 1.040e-21
Identity = 60/150 (40.00%), Postives = 83/150 (55.33%), Query Frame = 1
Query:    1 IAEVQAARLLREAGLDGPAVDVAALGELLGVRTMSGTDLPASGLA--TETDDG-WAIVLAAGDPPTRRRFSLAHELKHIIDDPFIDWLYPGYGAFSTDL--LAERAADQFAAALLMPKAWIKRDWGDRHQDLRRLAARYGVSMSAMNVRL 435
            IAE QA  LL   G  GP VDV+ + EL  +      +L   G++  ++   G W IV+   +   RRRF+L+HE KH++D PFI  +Y G GA   +   + E+  D FAA LLMP+ W+K+ W    Q    LAA + VS  AM +RL
Sbjct:   26 IAERQATLLLELLGQRGPTVDVSLIAELPRIEVKVEPNLSLGGISGFSQWSRGRWLIVVNRDENERRRRFTLSHEFKHVLDHPFIKEIYKGLGANDEERHRMTEQICDYFAACLLMPRNWLKQAWASGIQSPAALAAMFNVSEVAMKIRL 175          
BLAST of mRNA_P-wetherbeei_contig51939.1.1 vs. uniprot
Match: A0A221P1F7_9ACTN (ImmA/IrrE family metallo-endopeptidase n=1 Tax=Streptomyces pluripotens TaxID=1355015 RepID=A0A221P1F7_9ACTN)

HSP 1 Score: 95.5 bits (236), Expect = 2.010e-21
Identity = 64/159 (40.25%), Postives = 83/159 (52.20%), Query Frame = 1
Query:    1 IAEVQAARLLREAGLDGPAVDVAALGELLGV-------RTMSGTDLPASGLATETDDGWAIVLAAGDPPTRRRFSLAHELKHIIDDPFIDWLYPGYGAFSTDL--LAERAADQFAAALLMPKAWIKRDWGDRHQDLRRLAARYGVSMSAMNVRLGEFGL 450
            +AE QA  LL   G   PAVDV  + EL  V       R + G     SG +  +   W +V+   D  TRRRF+L HE KH++D PFI  +Y   G+   D   +AE+  D FAA LLMP+ W+KR W    Q+   LAA + VS  AM  RL +  L
Sbjct:   26 VAERQAILLLELLGQREPAVDVGLISELPRVEVKVEPRRRLGGI----SGFSQWSRGRWLVVVNQDDSGTRRRFTLGHEFKHVLDHPFIKEIYSRMGSTDEDRYRIAEQICDYFAACLLMPRNWVKRHWASGVQEAAALAALFNVSEVAMARRLRDLRL 180          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51939.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C1DKW8_9ACTN3.850e-2842.76Zn peptidase n=1 Tax=Actinomycetia bacterium TaxID... [more]
UPI001C3D90268.290e-2742.38ImmA/IrrE family metallo-endopeptidase n=1 Tax=Mil... [more]
UPI00104128671.010e-2639.63ImmA/IrrE family metallo-endopeptidase n=1 Tax=Can... [more]
UPI0010410AAE2.060e-2640.96ImmA/IrrE family metallo-endopeptidase n=1 Tax=Fra... [more]
UPI0018784F715.780e-2642.58ImmA/IrrE family metallo-endopeptidase n=1 Tax=The... [more]
A0A359A5S2_9ACTN8.200e-2348.00Peptidase_M78 domain-containing protein (Fragment)... [more]
A0A1C3P451_9ACTN3.080e-2238.41Peptidase_M78 domain-containing protein n=2 Tax=Fr... [more]
R4Z3X2_9ACTN8.480e-2240.00Peptidase_M78 domain-containing protein n=2 Tax=Ca... [more]
A0A6G2X949_9ACTN1.040e-2140.00ImmA/IrrE family metallo-endopeptidase n=2 Tax=Str... [more]
A0A221P1F7_9ACTN2.010e-2140.25ImmA/IrrE family metallo-endopeptidase n=1 Tax=Str... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51939contigP-wetherbeei_contig51939:71..547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog479431.Namu_4638
PFAMsPeptidase_M78
Model size477
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.02e-22
EggNOG OGsCOG2856@1|root,COG2856@2|Bacteria,2ISB4@201174|Actinobacteria,4EWAB@85013|Frankiales
DescriptionPfam:DUF955
Cds size477
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186779.2165751-CDS-P-wetherbeei_contig51939:70..5471683186779.2165751-CDS-P-wetherbeei_contig51939:70..547Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51939 71..547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51939.1.1prot_P-wetherbeei_contig51939.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51939 71..547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51939.1.1

>prot_P-wetherbeei_contig51939.1.1 ID=prot_P-wetherbeei_contig51939.1.1|Name=mRNA_P-wetherbeei_contig51939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
IAEVQAARLLREAGLDGPAVDVAALGELLGVRTMSGTDLPASGLATETDD
GWAIVLAAGDPPTRRRFSLAHELKHIIDDPFIDWLYPGYGAFSTDLLAER
AADQFAAALLMPKAWIKRDWGDRHQDLRRLAARYGVSMSAMNVRLGEFGL
SKIDVGHGR
back to top

mRNA from alignment at P-wetherbeei_contig51939:71..547-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51939.1.1 ID=mRNA_P-wetherbeei_contig51939.1.1|Name=mRNA_P-wetherbeei_contig51939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig51939:71..547- (Phaeothamnion wetherbeei SAG_119_79)
ATCGCCGAGGTGCAAGCCGCCCGACTACTTCGCGAGGCCGGTCTCGACGG CCCAGCCGTTGACGTCGCCGCCCTCGGCGAGCTACTTGGTGTGCGCACCA TGAGTGGCACCGACCTTCCGGCCTCTGGCCTGGCCACCGAGACCGACGAC GGCTGGGCCATCGTTCTGGCAGCGGGCGATCCACCGACCCGCCGCCGCTT CTCCCTCGCCCACGAGCTGAAGCACATCATCGACGACCCCTTCATCGACT GGCTCTACCCGGGCTACGGCGCCTTCAGCACCGACCTGCTTGCCGAGCGG GCCGCTGACCAGTTCGCCGCCGCGCTCCTGATGCCCAAGGCCTGGATCAA GCGCGACTGGGGCGATCGTCACCAGGATCTGCGCCGACTGGCCGCCCGCT ACGGAGTCTCCATGAGCGCCATGAACGTCCGCCTCGGAGAGTTTGGCCTC AGCAAGATCGACGTCGGCCACGGCCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig51939:71..547-

>mRNA_P-wetherbeei_contig51939.1.1 ID=mRNA_P-wetherbeei_contig51939.1.1|Name=mRNA_P-wetherbeei_contig51939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig51939:71..547- (Phaeothamnion wetherbeei SAG_119_79)
ATCGCCGAGGTGCAAGCCGCCCGACTACTTCGCGAGGCCGGTCTCGACGG
CCCAGCCGTTGACGTCGCCGCCCTCGGCGAGCTACTTGGTGTGCGCACCA
TGAGTGGCACCGACCTTCCGGCCTCTGGCCTGGCCACCGAGACCGACGAC
GGCTGGGCCATCGTTCTGGCAGCGGGCGATCCACCGACCCGCCGCCGCTT
CTCCCTCGCCCACGAGCTGAAGCACATCATCGACGACCCCTTCATCGACT
GGCTCTACCCGGGCTACGGCGCCTTCAGCACCGACCTGCTTGCCGAGCGG
GCCGCTGACCAGTTCGCCGCCGCGCTCCTGATGCCCAAGGCCTGGATCAA
GCGCGACTGGGGCGATCGTCACCAGGATCTGCGCCGACTGGCCGCCCGCT
ACGGAGTCTCCATGAGCGCCATGAACGTCCGCCTCGGAGAGTTTGGCCTC
AGCAAGATCGACGTCGGCCACGGCCGG
back to top