mRNA_P-wetherbeei_contig51927.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51927.1.1
Unique NamemRNA_P-wetherbeei_contig51927.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig51927.1.1 vs. uniprot
Match: UPI0012D8CFC0 (hypothetical protein n=1 Tax=Burkholderia pseudomultivorans TaxID=1207504 RepID=UPI0012D8CFC0)

HSP 1 Score: 52.0 bits (123), Expect = 4.110e-6
Identity = 23/65 (35.38%), Postives = 36/65 (55.38%), Query Frame = 1 
Query:    1 DHPKAKLLASVLAGYDLRETLRKIAGIQVIPRYQANAYRLELLAQLAVACCRGTKVPQWKHLTYW 195
            D    + L  VL  Y  ++ L  ++G+  +P++QAN YRLE+LA L V+ C G      K++  W
Sbjct:   16 DATAVQRLRQVLKKYSKKQALAAVSGLMTLPQFQANCYRLEVLAHLVVSSCEGQNAVAPKNVLNW 80
[Close]
BLAST of mRNA_P-wetherbeei_contig51927.1.1 vs. uniprot
Match: UPI001640247E (hypothetical protein n=3 Tax=Burkholderiaceae TaxID=119060 RepID=UPI001640247E)

HSP 1 Score: 52.0 bits (123), Expect = 4.110e-6
Identity = 23/58 (39.66%), Postives = 34/58 (58.62%), Query Frame = 1 
Query:   22 LASVLAGYDLRETLRKIAGIQVIPRYQANAYRLELLAQLAVACCRGTKVPQWKHLTYW 195
            L  VL  Y  ++ L  ++G+  +P++QAN YRLE+LA L VA C G      K++  W
Sbjct:   56 LRQVLKKYSKKQALAAVSGLMTLPQFQANCYRLEVLAHLVVASCEGHNAVLPKNVLNW 113
[Close]
BLAST of mRNA_P-wetherbeei_contig51927.1.1 vs. uniprot
Match: UPI001655DA89 (hypothetical protein n=1 Tax=Paraburkholderia podalyriae TaxID=1938811 RepID=UPI001655DA89)

HSP 1 Score: 50.8 bits (120), Expect = 1.050e-5
Identity = 23/61 (37.70%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:   13 AKLLASVLAGYDLRETLRKIAGIQVIPRYQANAYRLELLAQLAVACCRGTKVPQWKHLTYW 195
            A+ L  +L+ Y  R  L  ++G+  +P++QAN YRLE+LA L  A C G  +   K++  W
Sbjct:   20 ARNLPKILSKYSKRRALSAVSGLLTLPQFQANTYRLEILAHLIAANCTGETMVGPKNVLNW 80
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51927.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI0012D8CFC04.110e-635.38hypothetical protein n=1 Tax=Burkholderia pseudomu... [more]
UPI001640247E4.110e-639.66hypothetical protein n=3 Tax=Burkholderiaceae TaxI... [more]
UPI001655DA891.050e-537.70hypothetical protein n=1 Tax=Paraburkholderia poda... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51927contigP-wetherbeei_contig51927:2..196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog477974.Daud_0796
Model size195
Max annot lvl186801|Clostridia
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.41e-07
EggNOG OGsCOG3012@1|root,COG3012@2|Bacteria,1VHC5@1239|Firmicutes,24Z66@186801|Clostridia
DescriptionSEC-C Motif Domain Protein
Cds size195
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186779.0248816-CDS-P-wetherbeei_contig51927:1..1961683186779.0248816-CDS-P-wetherbeei_contig51927:1..196Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51927 2..196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51927.1.1prot_P-wetherbeei_contig51927.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51927 2..196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51927.1.1

>prot_P-wetherbeei_contig51927.1.1 ID=prot_P-wetherbeei_contig51927.1.1|Name=mRNA_P-wetherbeei_contig51927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
DHPKAKLLASVLAGYDLRETLRKIAGIQVIPRYQANAYRLELLAQLAVAC
CRGTKVPQWKHLTYW
back to top

mRNA from alignment at P-wetherbeei_contig51927:2..196-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51927.1.1 ID=mRNA_P-wetherbeei_contig51927.1.1|Name=mRNA_P-wetherbeei_contig51927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig51927:2..196- (Phaeothamnion wetherbeei SAG_119_79)
GATCATCCAAAGGCCAAGCTCTTGGCTTCCGTCTTGGCTGGGTATGACCT
GCGCGAAACCTTACGGAAGATCGCCGGTATTCAAGTAATCCCGCGCTATC
AAGCCAATGCATACCGACTTGAATTGCTTGCCCAACTCGCAGTAGCCTGC
TGCAGAGGAACGAAAGTTCCTCAATGGAAGCACCTGACTTATTGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig51927:2..196-

>mRNA_P-wetherbeei_contig51927.1.1 ID=mRNA_P-wetherbeei_contig51927.1.1|Name=mRNA_P-wetherbeei_contig51927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig51927:2..196- (Phaeothamnion wetherbeei SAG_119_79)
GATCATCCAAAGGCCAAGCTCTTGGCTTCCGTCTTGGCTGGGTATGACCT
GCGCGAAACCTTACGGAAGATCGCCGGTATTCAAGTAATCCCGCGCTATC
AAGCCAATGCATACCGACTTGAATTGCTTGCCCAACTCGCAGTAGCCTGC
TGCAGAGGAACGAAAGTTCCTCAATGGAAGCACCTGACTTATTGG
back to top