mRNA_P-wetherbeei_contig51926.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51926.1.1
Unique NamemRNA_P-wetherbeei_contig51926.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51926.1.1 vs. uniprot
Match: A0A7S3GZC5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZC5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 7.280e-17
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    7 QVELESLQEQLRVRKEKQYQLLERLQGHEEAQRQAEDHVAAAEDRLRALHARALELETQCGVDGAARRSAEENNK 231
            QVE+E+LQEQLRVRKEKQYQLLE+L   EEA+RQAED VA  E++LR L AR ++L+TQ  V+   R + EE+NK
Sbjct:   62 QVEVEALQEQLRVRKEKQYQLLEKLNSFEEAKRQAEDQVAGMEEQLRGLQARNVDLDTQIKVESRGRNNLEESNK 136          
BLAST of mRNA_P-wetherbeei_contig51926.1.1 vs. uniprot
Match: A0A833SXS3_PHYIN (Leucine Rich repeat n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SXS3_PHYIN)

HSP 1 Score: 80.9 bits (198), Expect = 4.500e-16
Identity = 48/75 (64.00%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    7 QVELESLQEQLRVRKEKQYQLLERLQGHEEAQRQAEDHVAAAEDRLRALHARALELETQCGVDGAARRSAEENNK 231
            QVELE+LQEQLRVRKEKQYQLLE+LQ  EEA+RQ++D +A+AED+ R LHAR  ELETQ  ++  A+R+  + NK
Sbjct:  207 QVELEALQEQLRVRKEKQYQLLEKLQQLEEAKRQSDDQLASAEDKARKLHARNQELETQVQLEAKAKRAQIDANK 281          
BLAST of mRNA_P-wetherbeei_contig51926.1.1 vs. uniprot
Match: A0A0W8DMV4_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DMV4_PHYNI)

HSP 1 Score: 79.7 bits (195), Expect = 1.130e-15
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 1
Query:    7 QVELESLQEQLRVRKEKQYQLLERLQGHEEAQRQAEDHVAAAEDRLRALHARALELETQCGVDGAARRSAEENNK 231
            QVELE+LQEQLRVRKEKQYQLLE+LQ  EEA+RQ++D +A+AED+ R LHAR  ELETQ  ++  A+R   + NK
Sbjct:  146 QVELEALQEQLRVRKEKQYQLLEKLQQLEEAKRQSDDQLASAEDKARKLHARNQELETQVQLEAKAKRVQIDANK 220          
BLAST of mRNA_P-wetherbeei_contig51926.1.1 vs. uniprot
Match: A0A2P4Y0T4_9STRA (DNA topoisomerase 2 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y0T4_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.580e-15
Identity = 47/75 (62.67%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    7 QVELESLQEQLRVRKEKQYQLLERLQGHEEAQRQAEDHVAAAEDRLRALHARALELETQCGVDGAARRSAEENNK 231
            QVELE+LQEQLRVRKEKQYQLLE+LQ  EEA+RQ++D +A+AE++ R LHAR  ELETQ  ++  A+R+  + NK
Sbjct:    4 QVELEALQEQLRVRKEKQYQLLEKLQQLEEAKRQSDDQLASAEEKARKLHARNQELETQVQLEAKAKRAQIDANK 78          
BLAST of mRNA_P-wetherbeei_contig51926.1.1 vs. uniprot
Match: A0A0P1AQ66_PLAHL (Leucine-rich repeat, ribonuclease inhibitor subtype n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AQ66_PLAHL)

HSP 1 Score: 75.1 bits (183), Expect = 4.840e-14
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   10 VELESLQEQLRVRKEKQYQLLERLQGHEEAQRQAEDHVAAAEDRLRALHARALELETQCGVDGAARRSAEENNK 231
            VELESL EQLR+RKEKQYQLLE++Q  EE +RQ+ED +AA ED++R LH R  ELETQ  ++  A+R+  + NK
Sbjct:  208 VELESLHEQLRLRKEKQYQLLEKMQQLEELKRQSEDQLAALEDKMRKLHVRNQELETQVQLEAKAKRAQIDANK 281          
BLAST of mRNA_P-wetherbeei_contig51926.1.1 vs. uniprot
Match: H3GJQ8_PHYRM (Uncharacterized protein n=19 Tax=Phytophthora TaxID=4783 RepID=H3GJQ8_PHYRM)

HSP 1 Score: 75.1 bits (183), Expect = 4.840e-14
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    7 QVELESLQEQLRVRKEKQYQLLERLQGHEEAQRQAEDHVAAAEDRLRALHARALELETQCGVDGAARRSAEENNK 231
            QVELE+LQE  RVRKEKQYQLLE+LQ  EEA+RQ++D +A+AE++ R LHAR  ELETQ  ++  A+R+  + NK
Sbjct:  207 QVELEALQEXXRVRKEKQYQLLEKLQQLEEAKRQSDDQLASAEEKTRKLHARNQELETQVQLEAKAKRAQIDANK 281          
BLAST of mRNA_P-wetherbeei_contig51926.1.1 vs. uniprot
Match: A0A813BM05_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BM05_9DINO)

HSP 1 Score: 74.7 bits (182), Expect = 6.280e-14
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    7 QVELESLQEQLRVRKEKQYQLLERLQGHEEAQRQAEDHVAAAEDRLRALHARALELETQCGVDGAARRSAEENNK 231
            QVELE+LQEQLRVRKEKQY LL + Q  EE QR A+D +   E+++R LHA+ +ELETQ  V+  A+R+ +E NK
Sbjct:  192 QVELEALQEQLRVRKEKQYHLLGKTQEAEEGQRAAKDQLGIMEEKIRTLHAKTVELETQLQVEARAKRNQQETNK 266          
BLAST of mRNA_P-wetherbeei_contig51926.1.1 vs. uniprot
Match: A0A6H5KVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD9_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.690e-13
Identity = 58/135 (42.96%), Postives = 66/135 (48.89%), Query Frame = 1
Query:    7 QVELESLQEQLRVRKEKQYQLLERLQGHEEAQRQAEDH------------------------------------------------------------VAAAEDRLRALHARALELETQCGVDGAARRSAEENNK 231
            QVELESLQEQLRVRKEKQYQLLE+LQG EEA+RQAED                                                             V++ ED+LRALHAR+LELETQ  V+   RRSAEE N+
Sbjct:  232 QVELESLQEQLRVRKEKQYQLLEKLQGQEEAKRQAEDQSISMNSRDAWEAEYPKMPIVPKVHPLLAVWLASKLTGNTFSVPYSLLYITKTHKTAKPNKVSSMEDKLRALHARSLELETQLQVEARGRRSAEEANR 366          
BLAST of mRNA_P-wetherbeei_contig51926.1.1 vs. uniprot
Match: A0A2D4BCY9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BCY9_PYTIN)

HSP 1 Score: 72.0 bits (175), Expect = 5.860e-13
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    7 QVELESLQEQLRVRKEKQYQLLERLQGHEEAQRQAEDHVAAAEDRLRALHARALELETQCGVDGAARRSAEENNK 231
            QVE+E+LQEQLRVRKEKQYQLLE+ Q  EE++R A+D + A ED+LR  H R  ELETQ  ++  A+R+  + NK
Sbjct:  215 QVEVEALQEQLRVRKEKQYQLLEKXQQLEESKRHADDQLTAIEDKLRKFHERNQELETQLQLESKAKRAQIDANK 289          
BLAST of mRNA_P-wetherbeei_contig51926.1.1 vs. uniprot
Match: A0A6A5AQA7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AQA7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.290e-11
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    7 QVELESLQEQLRVRKEKQYQLLERLQGHEEAQRQAEDHVAAAEDRLRALHARALELETQCGVDGAARRSAEENNK 231
            QVELESL EQLRVRKEKQYQLLE++Q  EEA+RQ++D +   ED++R L  +A E +TQ  ++  A+RS  + NK
Sbjct:  277 QVELESLHEQLRVRKEKQYQLLEKIQSLEEAKRQSDDTLHGMEDKIRQLLEQAQERDTQLQLESKAKRSQIDANK 351          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51926.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3GZC5_9STRA7.280e-1762.67Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A833SXS3_PHYIN4.500e-1664.00Leucine Rich repeat n=1 Tax=Phytophthora infestans... [more]
A0A0W8DMV4_PHYNI1.130e-1564.00Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A2P4Y0T4_9STRA1.580e-1562.67DNA topoisomerase 2 n=1 Tax=Phytophthora palmivora... [more]
A0A0P1AQ66_PLAHL4.840e-1459.46Leucine-rich repeat, ribonuclease inhibitor subtyp... [more]
H3GJQ8_PHYRM4.840e-1460.00Uncharacterized protein n=19 Tax=Phytophthora TaxI... [more]
A0A813BM05_9DINO6.280e-1457.33Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A6H5KVD9_9PHAE1.690e-1342.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2D4BCY9_PYTIN5.860e-1357.33Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6A5AQA7_9STRA1.290e-1156.00Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51926contigP-wetherbeei_contig51926:113..343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4792.ETI45180
PFAMsLRR_6
Model size231
Max annot lvl4776|Peronosporales
KEGG koko:K10352
KEGG Pathwayko04530,map04530
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.37e-17
EggNOG OGs28IV4@1|root,2QR6T@2759|Eukaryota,3QBFE@4776|Peronosporales
DescriptionLeucine Rich repeat
Cds size231
COG categoryS
BRITEko00000,ko00001,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186778.99737-CDS-P-wetherbeei_contig51926:112..3431683186778.99737-CDS-P-wetherbeei_contig51926:112..343Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51926 113..343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51926.1.1prot_P-wetherbeei_contig51926.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51926 113..343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51926.1.1

>prot_P-wetherbeei_contig51926.1.1 ID=prot_P-wetherbeei_contig51926.1.1|Name=mRNA_P-wetherbeei_contig51926.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=77bp
RLQVELESLQEQLRVRKEKQYQLLERLQGHEEAQRQAEDHVAAAEDRLRA
LHARALELETQCGVDGAARRSAEENNK
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mRNA from alignment at P-wetherbeei_contig51926:113..343+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51926.1.1 ID=mRNA_P-wetherbeei_contig51926.1.1|Name=mRNA_P-wetherbeei_contig51926.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig51926:113..343+ (Phaeothamnion wetherbeei SAG_119_79)
CGACTGCAGGTGGAACTGGAGTCGCTGCAGGAGCAGCTGCGCGTGCGCAA GGAGAAGCAGTACCAGCTGCTGGAGCGGCTGCAGGGCCACGAGGAGGCCC AGCGCCAGGCGGAGGACCATGTCGCCGCCGCGGAGGACCGCCTGCGCGCT CTGCACGCCCGAGCCCTCGAGCTCGAGACGCAGTGCGGCGTCGACGGCGC CGCGCGCCGGTCCGCTGAGGAGAACAACAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51926:113..343+

>mRNA_P-wetherbeei_contig51926.1.1 ID=mRNA_P-wetherbeei_contig51926.1.1|Name=mRNA_P-wetherbeei_contig51926.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig51926:113..343+ (Phaeothamnion wetherbeei SAG_119_79)
CGACTGCAGGTGGAACTGGAGTCGCTGCAGGAGCAGCTGCGCGTGCGCAA
GGAGAAGCAGTACCAGCTGCTGGAGCGGCTGCAGGGCCACGAGGAGGCCC
AGCGCCAGGCGGAGGACCATGTCGCCGCCGCGGAGGACCGCCTGCGCGCT
CTGCACGCCCGAGCCCTCGAGCTCGAGACGCAGTGCGGCGTCGACGGCGC
CGCGCGCCGGTCCGCTGAGGAGAACAACAAG
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