mRNA_P-wetherbeei_contig51922.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A7C3JQC6_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3JQC6_9PROT) HSP 1 Score: 136 bits (343), Expect = 5.360e-37 Identity = 62/114 (54.39%), Postives = 88/114 (77.19%), Query Frame = 1
Query: 1 VPHMKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFGKLIKAAGIQAE 342
+PH +TGRLR+LA +R+ PE+PT+AE+GVPG+DF+SWTG+LAPTGTP +II++L+ ++ R LPE ++L+ +GFDLVG +P F A IK +IAR GK+++ A IQAE
Sbjct: 210 LPHHRTGRLRILATAGAQRTNAAPELPTIAESGVPGYDFNSWTGFLAPTGTPADIISRLNAEVVRITRLPETSERLSAVGFDLVGSSPAEFGAHIKANIARIGKVVREANIQAE 323
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A1F4E310_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4E310_9PROT) HSP 1 Score: 130 bits (328), Expect = 8.190e-35 Identity = 60/113 (53.10%), Postives = 82/113 (72.57%), Query Frame = 1
Query: 1 VPHMKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFGKLIKAAGIQA 339
+PH++ G+LR LA+ S KRSP++PE+PTVAEA +PGF D W G AP GTPKEI+ KLH +I R + P+ K +L TLG D V TP+ F A +KT+ ++GKL++ AGI+A
Sbjct: 205 MPHVRGGKLRALAVSSAKRSPSVPELPTVAEAALPGFAVDQWYGLFAPAGTPKEIVAKLHGEIARLVAQPDAKQRLLTLGLDPVASTPDEFTAYVKTETVKWGKLVREAGIRA 317
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A1F4DII2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DII2_9PROT) HSP 1 Score: 130 bits (327), Expect = 1.200e-34 Identity = 59/115 (51.30%), Postives = 85/115 (73.91%), Query Frame = 1
Query: 1 VPHMKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFD-LVGGTPEAFAALIKTDIARFGKLIKAAGIQAE 342
+PHM++G+LR L + PKRS + P++PT+AEAGVPG++ W G LAP GTPK +ITK+H D+ + L PE++ KL ++G D +VGGTP AA IK + A++ KL+KAAG++ E
Sbjct: 206 LPHMQSGKLRGLGVTGPKRSASAPQLPTIAEAGVPGYELTPWHGLLAPAGTPKPVITKVHADVVKALAAPEIRTKLVSVGIDNIVGGTPAELAAFIKAETAKYAKLVKAAGLRRE 320
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A7Y6TZ12_9BURK (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Schlegelella koreensis TaxID=2742824 RepID=A0A7Y6TZ12_9BURK) HSP 1 Score: 129 bits (324), Expect = 3.570e-34 Identity = 65/114 (57.02%), Postives = 82/114 (71.93%), Query Frame = 1
Query: 1 VPHMKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFGKLIKAAGIQAE 342
+PH+K+GRLR LAI KR PTLP+VPT AEAG+P +DF W G LAP GTP+ I+ KL T+I R L LP+VK +L G + V TP F +LI++D RFGKLIK+AGI+ E
Sbjct: 210 IPHIKSGRLRPLAITGTKRLPTLPDVPTFAEAGLPAYDFQLWFGVLAPAGTPRPIVEKLSTEIARILALPDVKQQLADQGLETVYRTPAEFDSLIRSDHERFGKLIKSAGIKIE 323
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A1F4CY62_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4CY62_9PROT) HSP 1 Score: 129 bits (324), Expect = 3.650e-34 Identity = 60/114 (52.63%), Postives = 86/114 (75.44%), Query Frame = 1
Query: 1 VPHMKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFGKLIKAAGIQAE 342
+PH+KTG+LRVLA KR LP+VPT+AE+G PGF+ +W G LAP+GTPK ++ +LH + R L + VKD+L LGFD+VG PEAFAA +KT+I ++ ++++A+GI+AE
Sbjct: 211 MPHVKTGKLRVLATTGLKRFSLLPQVPTIAESGFPGFEATAWYGLLAPSGTPKAVVARLHDETVRALRMSSVKDRLEPLGFDIVGSKPEAFAAYMKTEIKKWAEIVEASGIKAE 324
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A5P2HF46_9BURK (Tripartite tricarboxylate transporter substrate binding protein n=2 Tax=Cupriavidus pauculus TaxID=82633 RepID=A0A5P2HF46_9BURK) HSP 1 Score: 129 bits (324), Expect = 4.470e-34 Identity = 61/114 (53.51%), Postives = 87/114 (76.32%), Query Frame = 1
Query: 1 VPHMKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFGKLIKAAGIQAE 342
+P M+ G++R LA+GSP+R+P +P+VPT+AE+GVPG+D D+W GY+AP G P+ I+ +LH+ I GL E KDKLT G+ + GGTP+A AA IK D A++G +I+AAGI A+
Sbjct: 222 LPQMRNGKVRALAVGSPQRNPLMPDVPTIAESGVPGYDSDTWYGYIAPAGVPQPILARLHSAIVA--GLKENKDKLTNDGYVVDGGTPQAMAAAIKADTAKWGGIIRAAGITAD 333
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A1F4AF14_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4AF14_9PROT) HSP 1 Score: 129 bits (323), Expect = 7.360e-34 Identity = 57/114 (50.00%), Postives = 86/114 (75.44%), Query Frame = 1
Query: 1 VPHMKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFGKLIKAAGIQAE 342
+PH+KTG+LR LA+ P+RS +P+VPT+AE+G PGF+ SW G LAP TPK +IT+LH DI + L P+VK +LT +GF++VG +P+ F A I+++I ++ K++KA+G + E
Sbjct: 229 LPHVKTGKLRALAVTGPQRSQAVPDVPTIAESGFPGFEARSWFGVLAPANTPKPVITRLHADIVKALQHPDVKQRLTGIGFEIVGSSPDEFGAYIRSEIKKWAKVVKASGAKPE 342
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A1F4D6G6_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4D6G6_9PROT) HSP 1 Score: 125 bits (315), Expect = 8.510e-34 Identity = 58/114 (50.88%), Postives = 89/114 (78.07%), Query Frame = 1
Query: 1 VPHMKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFGKLIKAAGIQAE 342
VPH++ GRLR LAI + KRS +P+VPT++E+G+ GF+ SW G+LAP TP+EI+TKLH +I + L LPEV+++L +LG + +G +P FA+ I+ D+A++GK+++AAGI+ E
Sbjct: 114 VPHVRAGRLRPLAISALKRSGAIPDVPTLSESGLEGFEAGSWYGFLAPAKTPREIVTKLHGEIIKALKLPEVQERLASLGTEPIGSSPAEFASQIRNDLAKWGKVVQAAGIKPE 227
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A7Y9IRY8_9BURK (Tripartite-type tricarboxylate transporter receptor subunit TctC n=2 Tax=Pigmentiphaga litoralis TaxID=516702 RepID=A0A7Y9IRY8_9BURK) HSP 1 Score: 128 bits (321), Expect = 1.190e-33 Identity = 57/110 (51.82%), Postives = 80/110 (72.73%), Query Frame = 1
Query: 10 MKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFGKLIKAAGIQA 339
+K G+LRVL + +PKRS P+ PT+AEAG+PG+ + +W G +AP+ TP ++ +LHT+ + + P V+DKL +LGFDLVG P+ F ALIK D+AR G L+K AGIQA
Sbjct: 222 VKEGKLRVLGVSTPKRSAAAPDWPTIAEAGLPGYSYAAWNGIVAPSATPPAVVARLHTEFAKAIATPAVRDKLASLGFDLVGSGPDEFGALIKADVARLGALVKKAGIQA 331
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A1F6VI37_9PROT (Uncharacterized protein n=1 Tax=Candidatus Muproteobacteria bacterium RBG_16_60_9 TaxID=1817755 RepID=A0A1F6VI37_9PROT) HSP 1 Score: 127 bits (320), Expect = 1.550e-33 Identity = 56/114 (49.12%), Postives = 82/114 (71.93%), Query Frame = 1
Query: 1 VPHMKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFGKLIKAAGIQAE 342
+PH+KTG+LR L + S KR+P LP+ PT+AEAGVPGF+ SW G AP GTPKE++ +LH +I + L P+ K++L+ G DL+G TPE FAA I + ++ K++KA+G + +
Sbjct: 215 LPHIKTGKLRALGVTSSKRAPALPDAPTIAEAGVPGFEATSWFGVFAPAGTPKEVVARLHKEIVKALNSPDTKERLSGQGADLIGNTPEQFAAYIAAETTKWAKVVKASGAKVD 328 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig51922.1.1 >prot_P-wetherbeei_contig51922.1.1 ID=prot_P-wetherbeei_contig51922.1.1|Name=mRNA_P-wetherbeei_contig51922.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp MKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKback to top mRNA from alignment at P-wetherbeei_contig51922:69..413+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig51922.1.1 ID=mRNA_P-wetherbeei_contig51922.1.1|Name=mRNA_P-wetherbeei_contig51922.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig51922:69..413+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig51922:69..413+ >mRNA_P-wetherbeei_contig51922.1.1 ID=mRNA_P-wetherbeei_contig51922.1.1|Name=mRNA_P-wetherbeei_contig51922.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig51922:69..413+ (Phaeothamnion wetherbeei SAG_119_79)back to top |