mRNA_P-wetherbeei_contig51917.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51917.1.1
Unique NamemRNA_P-wetherbeei_contig51917.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51917.1.1 vs. uniprot
Match: A0A7C3ACG2_9BACT (Ada_Zn_binding domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C3ACG2_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 3.340e-12
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   43 ALAGCSSTPDHYVASKKSQIFHRPTCGDAAHIEKAHLVTFATRDEAIKAGHRPCEVCKP 219
            A AG ++    +VASK S +FH+PTC  A  I   ++V +ATRD+AI AG RPC +CKP
Sbjct:  189 ATAGPTAATAAFVASKNSDLFHKPTCRSARRISPENVVHYATRDQAIAAGKRPCTICKP 247          
BLAST of mRNA_P-wetherbeei_contig51917.1.1 vs. uniprot
Match: A0A3D3UX85_9BACT (Ada_Zn_binding domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A3D3UX85_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 7.680e-10
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   76 YVASKKSQIFHRPTCGDAAHIEKAHLVTFATRDEAIKAGHRPCEVCKP 219
            YVASK   +FH+P C  A +I   +LVT+ ++DEAIKAG RPC+ C P
Sbjct:  216 YVASKSRNVFHKPDCRWAKNISPENLVTYKSKDEAIKAGKRPCKTCNP 263          
BLAST of mRNA_P-wetherbeei_contig51917.1.1 vs. uniprot
Match: UPI001909953D (hypothetical protein n=1 Tax=Persephonella atlantica TaxID=2699429 RepID=UPI001909953D)

HSP 1 Score: 57.8 bits (138), Expect = 4.140e-9
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1
Query:   73 HYVASKKSQIFHRPTCGDAAHIEKAHLVTFATRDEAIKAGHRPCEVCKP 219
            +Y+A +K ++FHRP+C     I+  H V F +R +AIKAG RPC VCKP
Sbjct:   60 YYIAKEKGKVFHRPSCRFGKKIK--HKVIFKSRKKAIKAGFRPCRVCKP 106          
BLAST of mRNA_P-wetherbeei_contig51917.1.1 vs. uniprot
Match: A0A7V1C2H9_9BACT (Ada_Zn_binding domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7V1C2H9_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 7.640e-9
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   76 YVASKKSQIFHRPTCGDAAHIEKAHLVTFATRDEAIKAGHRPCEVCKP 219
            YVASK S++FHRP C  A  I+  ++  + +R+EA KAG RPC+ CKP
Sbjct:  218 YVASKNSRVFHRPGCSSAKRIKPKNITGYNSRNEAEKAGKRPCKRCKP 265          
BLAST of mRNA_P-wetherbeei_contig51917.1.1 vs. uniprot
Match: A0A3A6MSQ7_9THEO (Nuclease n=1 Tax=Ammonifex sp. TaxID=1872493 RepID=A0A3A6MSQ7_9THEO)

HSP 1 Score: 59.3 bits (142), Expect = 1.120e-8
Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   76 YVASKKSQIFHRPTCGDAAHIEKAHLVTFATRDEAIKAGHRPCEVCKP 219
            YV +++S++FHR  C  A  I  A+ + F +R+EA+KAG+RPC VC+P
Sbjct:  228 YVGNRRSKVFHRSDCKWAKEISPANRMEFGSREEAVKAGYRPCRVCRP 275          
BLAST of mRNA_P-wetherbeei_contig51917.1.1 vs. uniprot
Match: A0A3A8P1B3_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Corallococcus aberystwythensis TaxID=2316722 RepID=A0A3A8P1B3_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 1.280e-8
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   34 ALLALAGCSSTPDHYVASKKSQIFHRPTCGDAAHIEKAHLVTFATRDEAIKAGHRPCEVCKP 219
            A+ + A  +S  D Y+ASK  QIFH+ TC     I+  +L+T++TRD A+K+G +P   C P
Sbjct:   49 AVRSSASKASMSDSYMASKHKQIFHKSTCRSVRLIKDENLLTWSTRDAAVKSGRKPAGDCDP 110          
BLAST of mRNA_P-wetherbeei_contig51917.1.1 vs. uniprot
Match: A0A7Y4VP46_9BACT (Ada metal-binding domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Y4VP46_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 1.590e-8
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1
Query:   76 YVASKKSQIFHRPTCGDAAHIEKAHLVTFATRDEAIKAGHRPCEVCK 216
            YVAS   + FH P C  A  I +A+LV +A+RD+A+  GHRPC+VC+
Sbjct:   42 YVASSIREPFHLPNCRWAEKISRANLVGYASRDDALADGHRPCKVCR 88          
BLAST of mRNA_P-wetherbeei_contig51917.1.1 vs. uniprot
Match: A0A3D8P4Y3_9THEO (Nuclease n=2 Tax=Ammonifex thiophilus TaxID=444093 RepID=A0A3D8P4Y3_9THEO)

HSP 1 Score: 57.8 bits (138), Expect = 1.640e-8
Identity = 23/48 (47.92%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   76 YVASKKSQIFHRPTCGDAAHIEKAHLVTFATRDEAIKAGHRPCEVCKP 219
            Y+ + +S++FHRP C  A  I   + V F +R+EA++AG+RPCEVC P
Sbjct:  132 YIGNARSKVFHRPDCEWAQKIAPHNRVEFRSREEALEAGYRPCEVCNP 179          
BLAST of mRNA_P-wetherbeei_contig51917.1.1 vs. uniprot
Match: A0A7C6RF35_9FIRM (Nuclease n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A7C6RF35_9FIRM)

HSP 1 Score: 58.9 bits (141), Expect = 1.640e-8
Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:   70 DHYVASKKSQIFHRPTCGDAAHIEKAHLVTFATRDEAIKAGHRPCEVCKP 219
            ++Y+ ++ S+IFH P C  A  I   + V F +R+EAIKAG+RPC+VC+P
Sbjct:  238 NYYIGNRNSKIFHYPDCQWAKKIAPQNKVIFESREEAIKAGYRPCKVCRP 287          
BLAST of mRNA_P-wetherbeei_contig51917.1.1 vs. uniprot
Match: U5CS18_CALSX (TNase-like domain-containing protein n=1 Tax=Caldanaerobacter subterraneus subsp. yonseiensis KB-1 TaxID=1388761 RepID=U5CS18_CALSX)

HSP 1 Score: 57.4 bits (137), Expect = 5.940e-8
Identity = 23/50 (46.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:   70 DHYVASKKSQIFHRPTCGDAAHIEKAHLVTFATRDEAIKAGHRPCEVCKP 219
            ++Y+ +K S+IF+ P C  A  I   + V F +R+EA+KAG++PC+VCKP
Sbjct:  238 NYYIGNKNSKIFYYPDCQWAKKIAPQNKVIFKSREEAVKAGYKPCKVCKP 287          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51917.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C3ACG2_9BACT3.340e-1250.85Ada_Zn_binding domain-containing protein n=1 Tax=P... [more]
A0A3D3UX85_9BACT7.680e-1054.17Ada_Zn_binding domain-containing protein n=1 Tax=P... [more]
UPI001909953D4.140e-951.02hypothetical protein n=1 Tax=Persephonella atlanti... [more]
A0A7V1C2H9_9BACT7.640e-952.08Ada_Zn_binding domain-containing protein n=1 Tax=P... [more]
A0A3A6MSQ7_9THEO1.120e-847.92Nuclease n=1 Tax=Ammonifex sp. TaxID=1872493 RepID... [more]
A0A3A8P1B3_9DELT1.280e-841.94Uncharacterized protein (Fragment) n=1 Tax=Corallo... [more]
A0A7Y4VP46_9BACT1.590e-851.06Ada metal-binding domain-containing protein n=1 Ta... [more]
A0A3D8P4Y3_9THEO1.640e-847.92Nuclease n=2 Tax=Ammonifex thiophilus TaxID=444093... [more]
A0A7C6RF35_9FIRM1.640e-848.00Nuclease n=1 Tax=Clostridia bacterium TaxID=204493... [more]
U5CS18_CALSX5.940e-846.00TNase-like domain-containing protein n=1 Tax=Calda... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51917contigP-wetherbeei_contig51917:198..419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog457415.HMPREF1006_00639
PFAMsAda_Zn_binding,Excalibur,SNase
Model size222
Max annot lvl2|Bacteria
KEGG koko:K01174
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.37e-10
EggNOG OGsCOG1525@1|root,COG1525@2|Bacteria
EC3.1.31.1
Descriptionnuclease
Cds size213
COG categoryL
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186778.8467674-CDS-P-wetherbeei_contig51917:197..4101683186778.8467674-CDS-P-wetherbeei_contig51917:197..410Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51917 198..410 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186778.8573608-UTR-P-wetherbeei_contig51917:410..4191683186778.8573608-UTR-P-wetherbeei_contig51917:410..419Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig51917 411..419 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51917.1.1prot_P-wetherbeei_contig51917.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51917 198..410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51917.1.1

>prot_P-wetherbeei_contig51917.1.1 ID=prot_P-wetherbeei_contig51917.1.1|Name=mRNA_P-wetherbeei_contig51917.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=71bp
MMRRTLILALLALAGCSSTPDHYVASKKSQIFHRPTCGDAAHIEKAHLVT
FATRDEAIKAGHRPCEVCKP*
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mRNA from alignment at P-wetherbeei_contig51917:198..419-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51917.1.1 ID=mRNA_P-wetherbeei_contig51917.1.1|Name=mRNA_P-wetherbeei_contig51917.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig51917:198..419- (Phaeothamnion wetherbeei SAG_119_79)
TTGAAGGCTATGATGCGCCGCACTTTGATTCTCGCACTGCTGGCCCTCGC GGGCTGCTCGAGCACGCCCGACCACTATGTGGCGAGCAAGAAGAGCCAGA TCTTCCATCGCCCTACTTGCGGAGATGCCGCTCATATCGAGAAGGCGCAT CTTGTCACGTTTGCTACACGGGATGAAGCTATTAAGGCGGGGCATCGCCC CTGCGAGGTCTGCAAGCCTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51917:198..419-

>mRNA_P-wetherbeei_contig51917.1.1 ID=mRNA_P-wetherbeei_contig51917.1.1|Name=mRNA_P-wetherbeei_contig51917.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig51917:198..419- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCGCCGCACTTTGATTCTCGCACTGCTGGCCCTCGCGGGCTGCTC
GAGCACGCCCGACCACTATGTGGCGAGCAAGAAGAGCCAGATCTTCCATC
GCCCTACTTGCGGAGATGCCGCTCATATCGAGAAGGCGCATCTTGTCACG
TTTGCTACACGGGATGAAGCTATTAAGGCGGGGCATCGCCCCTGCGAGGT
CTGCAAGCCTTAG
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