mRNA_P-wetherbeei_contig51901.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51901.1.1
Unique NamemRNA_P-wetherbeei_contig51901.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51901.1.1 vs. uniprot
Match: A0A6J4VDS4_9CHLR (Uncharacterized protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4VDS4_9CHLR)

HSP 1 Score: 178 bits (452), Expect = 5.370e-53
Identity = 94/174 (54.02%), Postives = 114/174 (65.52%), Query Frame = 1 
Query:    1 REAAAIRPIDLALEMGWSGTAPVYRYERGGANAPVPEPETITRLAGILGLDCADRVLLLGLAGHLPETEPLSPSEEARLLTRAEPILHAESQPAFLFDYRWRILGVNAAVRDGLGIAPDGVAAWRRDGRTMLDLVHVAGMGLASRLVDPATVATVQMLRFQLFHRLRRHEAWYR 522
            RE   +R IDLA+ M W+GTAPVYRYERGG +AP P+P+TI  LA +L L  ADR+ LLGLAGHLPET PL+  EEARLL    P L     P  +FD+R RIL VN+A+   LG   D    WR  G T+ D+     +GLA RLVDP      Q+LRF L+++LRRHE WYR
Sbjct:   16 RERRGLRAIDLAVAMRWAGTAPVYRYERGGPDAPRPDPDTINLLAQVLQLGYADRMTLLGLAGHLPETVPLTADEEARLLVALRPELERLPDPTQVFDFRGRILAVNSAMFRELGHPDDLGDRWREQGVTVFDVAWDPDLGLADRLVDPVAARRFQVLRFILYNQLRRHETWYR 189
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51901.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6J4VDS4_9CHLR5.370e-5354.02Uncharacterized protein n=1 Tax=uncultured Thermom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51901contigP-wetherbeei_contig51901:7..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog75379.Tint_2334
PFAMsHTH_31
Model size525
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.07e-05
EggNOG OGsCOG1396@1|root,COG1396@2|Bacteria,1MUG2@1224|Proteobacteria,2VQV9@28216|Betaproteobacteria
DescriptionSMART helix-turn-helix domain protein
Cds size525
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186778.7190397-CDS-P-wetherbeei_contig51901:6..5311683186778.7190397-CDS-P-wetherbeei_contig51901:6..531Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51901 7..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51901.1.1prot_P-wetherbeei_contig51901.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51901 7..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51901.1.1

>prot_P-wetherbeei_contig51901.1.1 ID=prot_P-wetherbeei_contig51901.1.1|Name=mRNA_P-wetherbeei_contig51901.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
REAAAIRPIDLALEMGWSGTAPVYRYERGGANAPVPEPETITRLAGILGL
DCADRVLLLGLAGHLPETEPLSPSEEARLLTRAEPILHAESQPAFLFDYR
WRILGVNAAVRDGLGIAPDGVAAWRRDGRTMLDLVHVAGMGLASRLVDPA
TVATVQMLRFQLFHRLRRHEAWYRA
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mRNA from alignment at P-wetherbeei_contig51901:7..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51901.1.1 ID=mRNA_P-wetherbeei_contig51901.1.1|Name=mRNA_P-wetherbeei_contig51901.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig51901:7..531+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGAGGCGGCGGCGATCCGGCCGATCGACCTCGCGCTGGAGATGGGCTG
GTCCGGCACGGCGCCGGTCTACCGCTACGAGCGGGGCGGGGCGAACGCGC
CGGTCCCCGAGCCGGAGACGATCACGCGGCTGGCCGGCATCCTCGGGCTG
GATTGCGCCGATCGCGTGCTGTTGCTGGGGCTGGCGGGGCACCTCCCGGA
GACGGAGCCGCTGAGCCCGTCCGAGGAGGCCCGGCTGCTGACGCGGGCGG
AGCCGATCCTGCACGCGGAGTCGCAGCCTGCCTTCCTCTTCGACTACCGG
TGGCGGATCCTGGGTGTGAACGCCGCCGTGCGCGATGGCCTGGGGATCGC
GCCGGACGGTGTGGCGGCGTGGCGACGGGACGGCCGCACGATGCTCGATC
TGGTTCACGTTGCCGGGATGGGGCTGGCGTCCCGGCTGGTCGATCCGGCG
ACGGTGGCGACGGTGCAGATGCTGCGGTTCCAGCTCTTCCACCGTCTGCG
CCGGCACGAGGCGTGGTACCGCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51901:7..531+

>mRNA_P-wetherbeei_contig51901.1.1 ID=mRNA_P-wetherbeei_contig51901.1.1|Name=mRNA_P-wetherbeei_contig51901.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig51901:7..531+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGAGGCGGCGGCGATCCGGCCGATCGACCTCGCGCTGGAGATGGGCTG
GTCCGGCACGGCGCCGGTCTACCGCTACGAGCGGGGCGGGGCGAACGCGC
CGGTCCCCGAGCCGGAGACGATCACGCGGCTGGCCGGCATCCTCGGGCTG
GATTGCGCCGATCGCGTGCTGTTGCTGGGGCTGGCGGGGCACCTCCCGGA
GACGGAGCCGCTGAGCCCGTCCGAGGAGGCCCGGCTGCTGACGCGGGCGG
AGCCGATCCTGCACGCGGAGTCGCAGCCTGCCTTCCTCTTCGACTACCGG
TGGCGGATCCTGGGTGTGAACGCCGCCGTGCGCGATGGCCTGGGGATCGC
GCCGGACGGTGTGGCGGCGTGGCGACGGGACGGCCGCACGATGCTCGATC
TGGTTCACGTTGCCGGGATGGGGCTGGCGTCCCGGCTGGTCGATCCGGCG
ACGGTGGCGACGGTGCAGATGCTGCGGTTCCAGCTCTTCCACCGTCTGCG
CCGGCACGAGGCGTGGTACCGCGCC
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