mRNA_P-wetherbeei_contig51821.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51821.1.1
Unique NamemRNA_P-wetherbeei_contig51821.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51821.1.1 vs. uniprot
Match: A0A6B1CWB7_9BACT (HD domain-containing protein (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6B1CWB7_9BACT)

HSP 1 Score: 193 bits (490), Expect = 5.360e-55
Identity = 98/175 (56.00%), Postives = 125/175 (71.43%), Query Frame = 1
Query:    4 IDFYQFGLLLKEAFHTVVASLTPAESAYLRMLLDELTDWDRVIRLRAGELRGLVRRIDATRFFLAIRPGSMSGGREVPLSNGRAVFVPPSLLPIVEHPEMTRLNRLNQLSLLPSRFCGATHSRFEHSLDVLRLAQSAARRLLDVPACRYLFDEADIEALLLAALLHDINHLPLPH 528
            +D YQ GL++++    + A+LTPAE     ML ++LT W+++ +   G L  L ++IDAT  +  IRPG+  GG+E+ LS  R VFVPP L+P+VEH E+TRLN    LSLL S F GATHSR+EHSLDVLRLAQSA RRL D P  R +FDE DIE LL++ALLHDINHLP+ H
Sbjct:  263 LDLYQVGLMMRDCAGEISAALTPAEVQSFIMLTEQLTSWNQIKQHDPGSLASLFQKIDATHIYFNIRPGTSHGGKEIVLSADRRVFVPPQLVPVVEHAELTRLNXXXXLSLLSSEFAGATHSRYEHSLDVLRLAQSAVRRLSDDPRFRQIFDEKDIEMLLISALLHDINHLPMMH 437          
BLAST of mRNA_P-wetherbeei_contig51821.1.1 vs. uniprot
Match: UPI00131EB384 (HD domain-containing protein n=1 Tax=Streptomyces xylophagus TaxID=285514 RepID=UPI00131EB384)

HSP 1 Score: 75.9 bits (185), Expect = 8.030e-13
Identity = 44/99 (44.44%), Postives = 58/99 (58.59%), Query Frame = 1
Query:  232 VPLSNGRAVFVPPSLLPIVEHPEMTRLNRLNQLSLLPSRFCGATHSRFEHSLDVLRLAQSAARRLLDVPACRYLFDEADIEALLLAALLHDINHLPLPH 528
            VP + GR V V P L  ++ H    RL R+ QL +   +F GATH+RF HSL +LR  +     LL+ P  R L + AD+EA +L ALLHD+ H  L H
Sbjct:  338 VPTAAGRGV-VTPRLSQLINHKLFQRLRRVPQLEMTLMKFPGATHTRFSHSLAMLRNTRYYLAHLLNDPKFRLLCEPADLEATILLALLHDVGHYQLSH 435          
BLAST of mRNA_P-wetherbeei_contig51821.1.1 vs. uniprot
Match: A0A3L7SHT1_9BACT (HD domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7SHT1_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 5.940e-10
Identity = 39/82 (47.56%), Postives = 49/82 (59.76%), Query Frame = 1
Query:  268 PSLLPIVEHPEMTRLNRLNQLSLLPSRFCGATHSRFEHSLDVLRLAQSAARRLLDVPACRYLFDEADIEALLLAALLHDINH 513
            P +  +V+  EM RL R++QL L+   + GATHSRFEHSL V RLA     RL   P      DE D  A ++AAL+HDI H
Sbjct:   31 PRVRALVDTAEMRRLARISQLGLVSLVYPGATHSRFEHSLGVYRLALEFLGRLRRDPHFAATVDEGDAAAFVVAALVHDIGH 112          
BLAST of mRNA_P-wetherbeei_contig51821.1.1 vs. uniprot
Match: A0A518G6A1_9BACT (HDc domain-containing protein n=1 Tax=Aureliella helgolandensis TaxID=2527968 RepID=A0A518G6A1_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 6.040e-10
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  253 AVFVPPSL--------LPIVEHPEMTRLNRLNQLSLLPSRFCGATHSRFEHSLDVLRLAQSAARRLLDVP---ACRYLFDEADIEALLLAALLHDINHLPLPH 528
            ++ +PP L        + +VE P+M RL R+ QL L+   + GATH+RFEHSL V RLA    R LL V    A R    + +++  L+AAL+HD+ H P  H
Sbjct:   21 SIRIPPELDVPVTSRVMALVETPQMQRLKRITQLGLVGHVYPGATHTRFEHSLGVYRLACEVLRHLLGVDSHFASRV--TDHELKIFLVAALMHDVGHWPYCH 121          
BLAST of mRNA_P-wetherbeei_contig51821.1.1 vs. uniprot
Match: A0A496SKZ1_9BACT (HD domain-containing protein n=2 Tax=Candidatus Latescibacteria bacterium TaxID=2053570 RepID=A0A496SKZ1_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 1.090e-9
Identity = 40/90 (44.44%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  277 LPIVEHPEMTRLNRLNQLSLLPSRFCGATHSRFEHSLDVLRLAQSAARRLLDVPACRYLFDEADI------EALLLAALLHDINHLPLPH 528
            L IV HP   RL R+ QL L    F GATH+RFEHSL V+++A+   R   +V   R    +  I      + ++LAALLHDI H PL H
Sbjct:   25 LSIVNHPLFQRLRRIKQLGLAEYVFHGATHTRFEHSLGVMKIAEDILR-FTNVGLTRNKASDGSITNNFESQKIILAALLHDIGHFPLSH 113          
BLAST of mRNA_P-wetherbeei_contig51821.1.1 vs. uniprot
Match: A0A7V2BUV7_9BACT (HD domain-containing protein n=2 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V2BUV7_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 1.960e-9
Identity = 41/85 (48.24%), Postives = 49/85 (57.65%), Query Frame = 1
Query:  286 VEHPEMTRLNRLNQLSLLPSRFCGATHSRFEHSLDVLRLAQSAARRL----LDVPACRYLFDEADIEALLLAALLHDINHLPLPH 528
            +EHP + RL R++QL L    + GATH+RF H+L VL LAQ A   L    L +PA          EA LLAALLHDI H P  H
Sbjct:   60 LEHPYLQRLRRISQLGLAQFVYPGATHTRFNHALGVLHLAQEALMTLQTKGLSLPA-------ETQEATLLAALLHDIGHGPFSH 137          
BLAST of mRNA_P-wetherbeei_contig51821.1.1 vs. uniprot
Match: UPI001035BD0B (protein kinase n=1 Tax=unclassified Ornithinimicrobium TaxID=2615080 RepID=UPI001035BD0B)

HSP 1 Score: 65.5 bits (158), Expect = 3.190e-9
Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 1
Query:  232 VPLSNGRAVFVPPSLLPIVEHPEMTRLNRLNQLSLLPSRFCGATHSRFEHSLDVLRLAQSAARRLLDVPACRYLFDEADIEALLLAALLHDINHLPLPH 528
            VP + GRAV     +  + +H  + RL++++QL      F GATH+RF HS+ VLR  +     LL+    R   +  D+EA LL ALLHD+ H  L H
Sbjct:  347 VPTATGRAVMTR-RISELTDHRLLNRLHQVHQLEATYLTFPGATHTRFSHSVAVLRNTRYYVSHLLNDSRFRRQAEREDLEATLLLALLHDVGHFQLSH 444          
BLAST of mRNA_P-wetherbeei_contig51821.1.1 vs. uniprot
Match: A0A3M1M3G8_9BACT (HD domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1M3G8_9BACT)

HSP 1 Score: 65.1 bits (157), Expect = 3.790e-9
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 1
Query:  256 VFVPPSLLPIVEHPEMTRLNRLNQLSLLPSRFCGATHSRFEHSLDVLRLAQSAARRLLDV-PACRYLFDEADIEALLLAALLHDINHLPLPH 528
            V V P +  +++   + RL +++QL L+   + GATHSRFEHSL V RLA    R+L+ V P      D   +   LL+ALLHD+ H P  H
Sbjct:   39 VPVSPRVRAVLDTEAVQRLKKISQLGLVTHVYPGATHSRFEHSLGVYRLALLVIRQLIAVEPDWARRLDSDSLSVFLLSALLHDVGHWPFCH 130          
BLAST of mRNA_P-wetherbeei_contig51821.1.1 vs. uniprot
Match: A0A5C6A6M8_9BACT (HDc domain-containing protein n=2 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C6A6M8_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 6.680e-9
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  301 MTRLNRLNQLSLLPSRFCGATHSRFEHSLDVLRLAQSAARRLLDVPACRYLFDEADIEALLLAALLHDINHLPLPH 528
            M RL+R++QL ++   + GATHSR EHSL V   A     R +D PA +      D++A +LAAL+HD+ H P  H
Sbjct:    1 MQRLSRISQLGMVSLVYPGATHSRMEHSLGVYYNALRFLTRFIDDPALKDFISVRDVDAFVLAALVHDVGHWPYCH 76          
BLAST of mRNA_P-wetherbeei_contig51821.1.1 vs. uniprot
Match: A0A5B9PC36_9BACT (HD domain protein n=1 Tax=Mariniblastus fucicola TaxID=980251 RepID=A0A5B9PC36_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 9.340e-9
Identity = 36/82 (43.90%), Postives = 46/82 (56.10%), Query Frame = 1
Query:  283 IVEHPEMTRLNRLNQLSLLPSRFCGATHSRFEHSLDVLRLAQSAARRLLDVPACRYLFDEADIEALLLAALLHDINHLPLPH 528
            I++ P   RL R++QL L+   +  A HSRFEHSL V R      ++L   P    L     +EALLLAALLHD+ H P  H
Sbjct:   37 IIDTPVFQRLKRISQLGLVAFVYPAANHSRFEHSLGVFRNCLLFVKQLAWQPRFCELVSAEQVEALLLAALLHDVGHWPFCH 118          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51821.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B1CWB7_9BACT5.360e-5556.00HD domain-containing protein (Fragment) n=1 Tax=Ge... [more]
UPI00131EB3848.030e-1344.44HD domain-containing protein n=1 Tax=Streptomyces ... [more]
A0A3L7SHT1_9BACT5.940e-1047.56HD domain-containing protein n=1 Tax=Planctomycete... [more]
A0A518G6A1_9BACT6.040e-1040.78HDc domain-containing protein n=1 Tax=Aureliella h... [more]
A0A496SKZ1_9BACT1.090e-944.44HD domain-containing protein n=2 Tax=Candidatus La... [more]
A0A7V2BUV7_9BACT1.960e-948.24HD domain-containing protein n=2 Tax=Bacteroidetes... [more]
UPI001035BD0B3.190e-939.39protein kinase n=1 Tax=unclassified Ornithinimicro... [more]
A0A3M1M3G8_9BACT3.790e-941.30HD domain-containing protein n=1 Tax=Planctomycete... [more]
A0A5C6A6M8_9BACT6.680e-943.42HDc domain-containing protein n=2 Tax=Stieleria va... [more]
A0A5B9PC36_9BACT9.340e-943.90HD domain protein n=1 Tax=Mariniblastus fucicola T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51821contigP-wetherbeei_contig51821:6..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2711.XP_006483840.1
PFAMsHD
Model size528
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.82e-10
EggNOG OGsCOG1078@1|root,KOG2681@2759|Eukaryota,37I91@33090|Viridiplantae,3GFTY@35493|Streptophyta
DescriptionDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog
Cds size528
COG categoryH
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186777.7358508-CDS-P-wetherbeei_contig51821:5..5331683186777.7358508-CDS-P-wetherbeei_contig51821:5..533Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51821 6..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51821.1.1prot_P-wetherbeei_contig51821.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51821 6..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51821.1.1

>prot_P-wetherbeei_contig51821.1.1 ID=prot_P-wetherbeei_contig51821.1.1|Name=mRNA_P-wetherbeei_contig51821.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp
WIDFYQFGLLLKEAFHTVVASLTPAESAYLRMLLDELTDWDRVIRLRAGE
LRGLVRRIDATRFFLAIRPGSMSGGREVPLSNGRAVFVPPSLLPIVEHPE
MTRLNRLNQLSLLPSRFCGATHSRFEHSLDVLRLAQSAARRLLDVPACRY
LFDEADIEALLLAALLHDINHLPLPH
back to top

mRNA from alignment at P-wetherbeei_contig51821:6..533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51821.1.1 ID=mRNA_P-wetherbeei_contig51821.1.1|Name=mRNA_P-wetherbeei_contig51821.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig51821:6..533- (Phaeothamnion wetherbeei SAG_119_79)
TGGATCGACTTCTACCAGTTCGGCCTTCTCCTGAAGGAAGCGTTTCACAC GGTGGTCGCGTCGCTGACTCCGGCCGAGAGCGCCTACCTCCGGATGCTTC TCGACGAGCTCACGGATTGGGACCGAGTGATTCGGCTCCGCGCTGGGGAG CTGAGGGGCCTCGTTCGACGAATCGATGCGACTCGGTTCTTCTTGGCAAT CCGTCCAGGCTCGATGTCAGGAGGGCGCGAGGTCCCTCTCTCGAATGGTC GTGCCGTGTTTGTGCCGCCCAGTTTGCTTCCGATCGTTGAGCACCCGGAA ATGACGAGGCTCAACCGGCTGAACCAACTAAGCCTGCTCCCATCCAGGTT CTGTGGTGCCACGCATTCAAGGTTTGAGCACTCCCTTGATGTCCTGAGGC TCGCACAGTCGGCAGCCCGCCGCCTCCTCGACGTTCCTGCGTGCAGGTAT CTGTTCGACGAGGCAGATATCGAGGCACTGCTGCTTGCCGCGCTGCTACA CGACATCAACCATCTACCGCTGCCGCAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig51821:6..533-

>mRNA_P-wetherbeei_contig51821.1.1 ID=mRNA_P-wetherbeei_contig51821.1.1|Name=mRNA_P-wetherbeei_contig51821.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig51821:6..533- (Phaeothamnion wetherbeei SAG_119_79)
TGGATCGACTTCTACCAGTTCGGCCTTCTCCTGAAGGAAGCGTTTCACAC
GGTGGTCGCGTCGCTGACTCCGGCCGAGAGCGCCTACCTCCGGATGCTTC
TCGACGAGCTCACGGATTGGGACCGAGTGATTCGGCTCCGCGCTGGGGAG
CTGAGGGGCCTCGTTCGACGAATCGATGCGACTCGGTTCTTCTTGGCAAT
CCGTCCAGGCTCGATGTCAGGAGGGCGCGAGGTCCCTCTCTCGAATGGTC
GTGCCGTGTTTGTGCCGCCCAGTTTGCTTCCGATCGTTGAGCACCCGGAA
ATGACGAGGCTCAACCGGCTGAACCAACTAAGCCTGCTCCCATCCAGGTT
CTGTGGTGCCACGCATTCAAGGTTTGAGCACTCCCTTGATGTCCTGAGGC
TCGCACAGTCGGCAGCCCGCCGCCTCCTCGACGTTCCTGCGTGCAGGTAT
CTGTTCGACGAGGCAGATATCGAGGCACTGCTGCTTGCCGCGCTGCTACA
CGACATCAACCATCTACCGCTGCCGCAC
back to top