mRNA_P-wetherbeei_contig51791.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51791.1.1
Unique NamemRNA_P-wetherbeei_contig51791.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51791.1.1 vs. uniprot
Match: A0A7X9KLH1_9ACTN (Metal-sensitive transcriptional regulator n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KLH1_9ACTN)

HSP 1 Score: 162 bits (409), Expect = 5.700e-50
Identity = 81/96 (84.38%), Postives = 89/96 (92.71%), Query Frame = 1
Query:   13 HATPGYSADKQQLIGRLRRIEGQVRGLQRLVESDTYCIDVLTQVAAVSKALQSVGVQLLDEHLQHCVAGAAASGDAERTEALVHEATRAVERLLRA 300
            HATPGYSA+KQQ+I RL+RIEGQVRGLQRL++ DTYCIDVLTQVAAVSKALQ VG+ LLDEHLQHCVAGAAASGD +RT  LVHEAT+AVERLLRA
Sbjct:    2 HATPGYSAEKQQVIARLKRIEGQVRGLQRLIDEDTYCIDVLTQVAAVSKALQGVGLHLLDEHLQHCVAGAAASGDTDRTTELVHEATKAVERLLRA 97          
BLAST of mRNA_P-wetherbeei_contig51791.1.1 vs. uniprot
Match: A0A6I3X080_9ACTN (Metal-sensing transcriptional repressor n=2 Tax=root TaxID=1 RepID=A0A6I3X080_9ACTN)

HSP 1 Score: 157 bits (396), Expect = 6.790e-48
Identity = 79/96 (82.29%), Postives = 88/96 (91.67%), Query Frame = 1
Query:   13 HATPGYSADKQQLIGRLRRIEGQVRGLQRLVESDTYCIDVLTQVAAVSKALQSVGVQLLDEHLQHCVAGAAASGDAERTEALVHEATRAVERLLRA 300
            HATPGY  DK+Q++ RLRRIEGQVRGLQRLV+ DTYCIDVLTQVAAVSKALQ VGV LLDEHL+HCVAGAAA+GDA RT+ LVHEAT+AVER+LRA
Sbjct:    9 HATPGYHDDKKQVLARLRRIEGQVRGLQRLVDEDTYCIDVLTQVAAVSKALQGVGVLLLDEHLRHCVAGAAAAGDAARTDELVHEATKAVERMLRA 104          
BLAST of mRNA_P-wetherbeei_contig51791.1.1 vs. uniprot
Match: A0A7K1BA76_9ACTN (Metal-sensing transcriptional repressor n=2 Tax=root TaxID=1 RepID=A0A7K1BA76_9ACTN)

HSP 1 Score: 152 bits (385), Expect = 2.450e-46
Identity = 78/93 (83.87%), Postives = 84/93 (90.32%), Query Frame = 1
Query:   22 PGYSADKQQLIGRLRRIEGQVRGLQRLVESDTYCIDVLTQVAAVSKALQSVGVQLLDEHLQHCVAGAAASGDAERTEALVHEATRAVERLLRA 300
            PGY  DKQQLI RL+RIEGQVRGLQRL+E DTYCIDVLTQ+AAVSK LQ VGVQLLDEHLQHCVAGAAASGD+ RT  LVHEAT+AVERLLR+
Sbjct:    3 PGYHGDKQQLILRLKRIEGQVRGLQRLIEDDTYCIDVLTQLAAVSKGLQGVGVQLLDEHLQHCVAGAAASGDSARTTELVHEATKAVERLLRS 95          
BLAST of mRNA_P-wetherbeei_contig51791.1.1 vs. uniprot
Match: A0A539DUC0_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DUC0_9ACTN)

HSP 1 Score: 153 bits (386), Expect = 2.490e-46
Identity = 77/100 (77.00%), Postives = 86/100 (86.00%), Query Frame = 1
Query:    1 GTTAHATPGYSADKQQLIGRLRRIEGQVRGLQRLVESDTYCIDVLTQVAAVSKALQSVGVQLLDEHLQHCVAGAAASGDAERTEALVHEATRAVERLLRA 300
            G     TPGY  DKQ+LI RL+RIEGQVRGLQR+++ DTYCIDVLTQ+AAVSK LQ VG+QLLDEHLQHCVAGAAASGD ERT  LVHEATRAV+RLLR+
Sbjct:    8 GYAGKVTPGYHGDKQKLITRLKRIEGQVRGLQRMIDDDTYCIDVLTQLAAVSKGLQGVGLQLLDEHLQHCVAGAAASGDRERTGELVHEATRAVDRLLRS 107          
BLAST of mRNA_P-wetherbeei_contig51791.1.1 vs. uniprot
Match: A0A3C2AYG7_9ACTN (Transcriptional regulator n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2AYG7_9ACTN)

HSP 1 Score: 137 bits (345), Expect = 3.070e-40
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = 1
Query:   13 HATPGYSADKQQLIGRLRRIEGQVRGLQRLVESDTYCIDVLTQVAAVSKALQSVGVQLLDEHLQHCVAGAAASGDAERTEALVHEATRAVERLLR 297
            H TPGY  DK +++ RL+RIEGQVRGLQR+V+ +TYCIDVLTQ+AA +KALQSVG+ LL+EHLQHCVAGAAA G  ERT+ LV EATRAVERLLR
Sbjct:    2 HGTPGYHDDKAKVLARLKRIEGQVRGLQRMVDEETYCIDVLTQLAATTKALQSVGLHLLEEHLQHCVAGAAADG--ERTDELVSEATRAVERLLR 94          
BLAST of mRNA_P-wetherbeei_contig51791.1.1 vs. uniprot
Match: A0A7K0VJA7_9ACTN (Metal-sensing transcriptional repressor (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7K0VJA7_9ACTN)

HSP 1 Score: 128 bits (322), Expect = 6.700e-37
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 1
Query:   19 TPGYSADKQQLIGRLRRIEGQVRGLQRLVESDTYCIDVLTQVAAVSKALQSVGVQLLDEHLQHCVAGAAASGDAERTEALV 261
            TPGY  DK Q++ RLRR+EGQVRGLQRL+E DTYCIDVLTQVAA SKALQ VG+ LLDEHL+HCV GAAASGD+ RTE LV
Sbjct:    2 TPGYHDDKTQVLARLRRVEGQVRGLQRLIEDDTYCIDVLTQVAAASKALQGVGLLLLDEHLRHCVVGAAASGDSTRTEELV 82          
BLAST of mRNA_P-wetherbeei_contig51791.1.1 vs. uniprot
Match: A0A6N2DR04_9ACTN (Metal-sensitive transcriptional regulator n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DR04_9ACTN)

HSP 1 Score: 122 bits (306), Expect = 3.110e-34
Identity = 61/97 (62.89%), Postives = 76/97 (78.35%), Query Frame = 1
Query:   10 AHATPGYSADKQQLIGRLRRIEGQVRGLQRLVESDTYCIDVLTQVAAVSKALQSVGVQLLDEHLQHCVAGAAASGDAERTEALVHEATRAVERLLRA 300
            A  TPGY  DK  ++ RLRR+EGQVRGLQR+VE DTYCIDVLTQVAA + ALQSV V+L+DEHL+HCVAGAA + D       + EA+RA+ERL+++
Sbjct:    4 ADVTPGYHDDKAAILTRLRRVEGQVRGLQRMVEDDTYCIDVLTQVAAATSALQSVAVKLVDEHLRHCVAGAAEADDPAEMATKLAEASRAIERLVKS 100          
BLAST of mRNA_P-wetherbeei_contig51791.1.1 vs. uniprot
Match: A0A838SX91_9ACTN (Metal-sensitive transcriptional regulator n=1 Tax=Euzebyales bacterium TaxID=2740540 RepID=A0A838SX91_9ACTN)

HSP 1 Score: 120 bits (302), Expect = 1.060e-33
Identity = 59/92 (64.13%), Postives = 74/92 (80.43%), Query Frame = 1
Query:   25 GYSADKQQLIGRLRRIEGQVRGLQRLVESDTYCIDVLTQVAAVSKALQSVGVQLLDEHLQHCVAGAAASGDAERTEALVHEATRAVERLLRA 300
            GY+ +K   + RLRR+EGQ+RGLQRLV+ DTYCIDVLTQVAA +KAL SV V LLDEH++HCV  AA SGD  R + ++ EATRA+ERL++A
Sbjct:    3 GYTQNKDDYLKRLRRVEGQIRGLQRLVDEDTYCIDVLTQVAAATKALHSVAVGLLDEHMRHCVREAATSGDDARADEMIAEATRAIERLVKA 94          
BLAST of mRNA_P-wetherbeei_contig51791.1.1 vs. uniprot
Match: A0A7K0A8H9_9ACTN (Metal-sensing transcriptional repressor n=2 Tax=Actinomycetia TaxID=1760 RepID=A0A7K0A8H9_9ACTN)

HSP 1 Score: 120 bits (301), Expect = 1.510e-33
Identity = 60/92 (65.22%), Postives = 74/92 (80.43%), Query Frame = 1
Query:   25 GYSADKQQLIGRLRRIEGQVRGLQRLVESDTYCIDVLTQVAAVSKALQSVGVQLLDEHLQHCVAGAAASGDAERTEALVHEATRAVERLLRA 300
            GYS  K+  + RLRRIEGQVRGLQRL+  DTYCIDVL QVAAV++ALQSV V LLDEH++HCV+ AA   D +  +A+V EATRA+ERL++A
Sbjct:    3 GYSISKEDYLKRLRRIEGQVRGLQRLINEDTYCIDVLNQVAAVNRALQSVAVGLLDEHVRHCVSDAAKGEDRDHADAMVTEATRAIERLIKA 94          
BLAST of mRNA_P-wetherbeei_contig51791.1.1 vs. uniprot
Match: A0A838HTJ0_9ACTN (Metal-sensitive transcriptional regulator n=1 Tax=Euzebyaceae bacterium TaxID=2740542 RepID=A0A838HTJ0_9ACTN)

HSP 1 Score: 119 bits (299), Expect = 3.040e-33
Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = 1
Query:   25 GYSADKQQLIGRLRRIEGQVRGLQRLVESDTYCIDVLTQVAAVSKALQSVGVQLLDEHLQHCVAGAAASGDAERTEALVHEATRAVERLLRA 300
            GY+ +K   + RLRR+EGQVRGLQRLV+ D YCIDVLTQVAA +KALQSV V LLDEH++HCV  A A GD  R + ++ EATRA+ERL++A
Sbjct:    3 GYTINKDDYLKRLRRVEGQVRGLQRLVDEDAYCIDVLTQVAAATKALQSVAVGLLDEHVRHCVREAVAGGDRARADEMITEATRAIERLVKA 94          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51791.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9KLH1_9ACTN5.700e-5084.38Metal-sensitive transcriptional regulator n=2 Tax=... [more]
A0A6I3X080_9ACTN6.790e-4882.29Metal-sensing transcriptional repressor n=2 Tax=ro... [more]
A0A7K1BA76_9ACTN2.450e-4683.87Metal-sensing transcriptional repressor n=2 Tax=ro... [more]
A0A539DUC0_9ACTN2.490e-4677.00Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A3C2AYG7_9ACTN3.070e-4073.68Transcriptional regulator n=1 Tax=Acidimicrobiacea... [more]
A0A7K0VJA7_9ACTN6.700e-3777.78Metal-sensing transcriptional repressor (Fragment)... [more]
A0A6N2DR04_9ACTN3.110e-3462.89Metal-sensitive transcriptional regulator n=1 Tax=... [more]
A0A838SX91_9ACTN1.060e-3364.13Metal-sensitive transcriptional regulator n=1 Tax=... [more]
A0A7K0A8H9_9ACTN1.510e-3365.22Metal-sensing transcriptional repressor n=2 Tax=Ac... [more]
A0A838HTJ0_9ACTN3.040e-3364.13Metal-sensitive transcriptional regulator n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51791contigP-wetherbeei_contig51791:22..324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1157634.KB912958_gene6536
Preferred namecsoR
PFAMsTrns_repr_metal
Model size303
Max annot lvl201174|Actinobacteria
KEGG koko:K21600
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.33e-33
EggNOG OGsCOG1937@1|root,COG1937@2|Bacteria,2IQAC@201174|Actinobacteria
Descriptionprotein conserved in bacteria
Cds size303
COG categoryS
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186777.208454-CDS-P-wetherbeei_contig51791:21..3241683186777.208454-CDS-P-wetherbeei_contig51791:21..324Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51791 22..324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51791.1.1prot_P-wetherbeei_contig51791.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51791 22..324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51791.1.1

>prot_P-wetherbeei_contig51791.1.1 ID=prot_P-wetherbeei_contig51791.1.1|Name=mRNA_P-wetherbeei_contig51791.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
GTTAHATPGYSADKQQLIGRLRRIEGQVRGLQRLVESDTYCIDVLTQVAA
VSKALQSVGVQLLDEHLQHCVAGAAASGDAERTEALVHEATRAVERLLRA
*
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mRNA from alignment at P-wetherbeei_contig51791:22..324-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51791.1.1 ID=mRNA_P-wetherbeei_contig51791.1.1|Name=mRNA_P-wetherbeei_contig51791.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig51791:22..324- (Phaeothamnion wetherbeei SAG_119_79)
GGAACGACGGCGCACGCGACACCGGGGTACTCGGCGGACAAGCAGCAGCT CATCGGGCGGCTGCGCCGCATCGAGGGGCAGGTGCGCGGTCTGCAACGTC TCGTCGAGTCCGACACGTACTGCATCGACGTGCTCACCCAGGTGGCTGCG GTCAGCAAGGCGCTGCAGAGCGTCGGCGTGCAGCTGCTCGACGAGCACCT CCAGCACTGCGTCGCCGGAGCCGCAGCGAGCGGCGACGCCGAGCGCACCG AAGCCCTCGTCCACGAAGCAACCCGCGCCGTCGAACGACTGCTGCGCGCC TGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51791:22..324-

>mRNA_P-wetherbeei_contig51791.1.1 ID=mRNA_P-wetherbeei_contig51791.1.1|Name=mRNA_P-wetherbeei_contig51791.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig51791:22..324- (Phaeothamnion wetherbeei SAG_119_79)
GGAACGACGGCGCACGCGACACCGGGGTACTCGGCGGACAAGCAGCAGCT
CATCGGGCGGCTGCGCCGCATCGAGGGGCAGGTGCGCGGTCTGCAACGTC
TCGTCGAGTCCGACACGTACTGCATCGACGTGCTCACCCAGGTGGCTGCG
GTCAGCAAGGCGCTGCAGAGCGTCGGCGTGCAGCTGCTCGACGAGCACCT
CCAGCACTGCGTCGCCGGAGCCGCAGCGAGCGGCGACGCCGAGCGCACCG
AAGCCCTCGTCCACGAAGCAACCCGCGCCGTCGAACGACTGCTGCGCGCC
TGA
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