mRNA_P-wetherbeei_contig5179.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5179.1.1
Unique NamemRNA_P-wetherbeei_contig5179.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5179.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5179contigP-wetherbeei_contig5179:1275..2986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog296587.XP_002509271.1
PFAMsmTERF
Model size1513
Max annot lvl2759|Eukaryota
KEGG koko:K06674,ko:K15032
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.22e-05
EggNOG OGsKOG1267@1|root,KOG1267@2759|Eukaryota
Descriptiontermination of mitochondrial transcription
Cds size1080
COG categoryS
BRITEko00000,ko00001,ko03012,ko03029,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186777.1360698-UTR-P-wetherbeei_contig5179:1274..15761683186777.1360698-UTR-P-wetherbeei_contig5179:1274..1576Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5179 1275..1576 +
1683186777.167595-UTR-P-wetherbeei_contig5179:2855..29861683186777.167595-UTR-P-wetherbeei_contig5179:2855..2986Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5179 2856..2986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186777.1475725-CDS-P-wetherbeei_contig5179:1576..19381683186777.1475725-CDS-P-wetherbeei_contig5179:1576..1938Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5179 1577..1938 +
1683186777.1567202-CDS-P-wetherbeei_contig5179:2137..28551683186777.1567202-CDS-P-wetherbeei_contig5179:2137..2855Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5179 2138..2855 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5179.1.1prot_P-wetherbeei_contig5179.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5179 1577..2855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5179.1.1

>prot_P-wetherbeei_contig5179.1.1 ID=prot_P-wetherbeei_contig5179.1.1|Name=mRNA_P-wetherbeei_contig5179.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=360bp
MLIRQPSIMGSSIDNAFRPMAALLRADPAVGGLGLSQRELKVVVIREPSV
LALSLESNVAPKIAAFRREVGATPAELRSAILASPNLLTCSLERRVLPRI
ATMREGGVMPRTVRRVFRLLMYSETNFARWLQTRLRTTLFLEELGVTARD
LRLMRRRHRLLLSLSVATISRTAAFLRDGVGLSPPELRRVIVRFPQVLGC
SPKALAAKRAFCVDGDNGLGLDDDGLRAVVLAQPSLLGLSVEGNLEPKVK
LLCREMGATVAELRVAVLANPSLLEYSLERRIRPRLLSMREAGLPVRIGS
VRQVCKLTDIAFDRWLVAARGGFVRHTAYVAPLGATPSAAAVDAAGVAAA
GAALGGIEC*
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mRNA from alignment at P-wetherbeei_contig5179:1275..2986+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5179.1.1 ID=mRNA_P-wetherbeei_contig5179.1.1|Name=mRNA_P-wetherbeei_contig5179.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1712bp|location=Sequence derived from alignment at P-wetherbeei_contig5179:1275..2986+ (Phaeothamnion wetherbeei SAG_119_79)
TTCGGTCGAGTCGAACTTGCGCCCCACCGTGAACTTCTTCGTGGTCGAAC
TGGGTATTACTCATGAGCGCGTCCGCCGGATGCTCCAGGTGCGTGAGGTC
GTGCTAATAAATATTTTATGGTTTCCTTACTTTCACGTTATTTTAACTTA
TAATATCATTCTTATCATTTCTCCACCTGGCCTGCTGTGTGCAGCGCCAC
CCGAGCCTGCTTGCCCTGAGCCTCCATGACGGCGGCAAGCTGCGAAAGAC
GCTGAGCTACTTTTACGACGACCTCGGACTCAAGCGGAGCGCCGTCAAAA
CCATGCTCATCCGTCAACCCAGCATCATGGGTTCGAGCATTGATAATGCG
TTCCGTCCGATGGCGGCCCTGCTGCGTGCCGACCCGGCCGTTGGCGGCCT
CGGCCTTTCGCAGCGAGAACTGAAAGTTGTCGTCATCCGGGAACCTTCCG
TTTTGGCGCTCTCCCTGGAATCGAATGTGGCGCCGAAGATTGCGGCGTTC
CGGCGGGAGGTCGGGGCGACCCCAGCGGAGCTGCGGAGCGCCATCTTGGC
GTCGCCGAACCTACTTACATGCAGCCTCGAACGGCGCGTGCTGCCGCGCA
TCGCCACGATGCGGGAGGGCGGGGTAATGCCGCGGACCGTCCGCCGCGTC
TTTCGCCTGCTCATGTGCGTTTTTGGGGTTGTGGAAGCGACACCGCCGAC
AGCCGGGCATGCTTTTCAAACTGTTTTCTCTATTTCTTTCCTACTTTTCA
TGGAAAAGTGCTTTTTTGGAAGGTCTTAAAGTTTTCAAGATGTCCTCGCT
TTTTCCACCCTCCTTTTTGTGCCAGCAACTCACTGTTAATAATGTGACCG
GGCGCAAAAACAGGTATTCGGAAACGAATTTCGCGCGCTGGCTCCAAACT
CGGCTGCGGACCACCTTATTTCTCGAGGAGCTCGGCGTCACGGCCCGCGA
CCTCCGGCTGATGCGGCGGCGGCACCGCCTGCTGCTCTCCCTCAGCGTCG
CCACCATCAGCCGCACCGCCGCCTTCCTGCGCGACGGCGTCGGCCTTTCC
CCGCCGGAGCTGCGCCGGGTGATCGTGCGGTTTCCGCAGGTGCTCGGCTG
CAGCCCGAAGGCGCTGGCGGCCAAGCGCGCCTTCTGTGTTGACGGCGACA
ACGGACTTGGATTGGACGACGACGGGCTGCGGGCAGTCGTCCTGGCGCAG
CCGTCCCTCCTCGGCCTCAGCGTCGAAGGTAACTTGGAGCCCAAGGTGAA
ACTCTTGTGCCGAGAAATGGGTGCCACTGTCGCCGAGTTGCGGGTGGCCG
TGTTGGCAAACCCGTCGCTTCTGGAGTATAGTTTGGAGCGACGAATACGG
CCGCGGCTCTTGTCGATGCGCGAGGCGGGGCTTCCCGTAAGAATCGGAAG
CGTGCGGCAGGTTTGCAAGCTGACGGACATTGCTTTTGACCGGTGGCTGG
TGGCGGCCCGCGGCGGGTTTGTGCGGCACACGGCGTACGTCGCACCGCTT
GGTGCAACGCCGTCTGCAGCAGCAGTTGACGCTGCGGGAGTGGCGGCCGC
CGGCGCTGCATTGGGAGGGATAGAGTGCTAGCTTTGTTGGGCTGTGTAGT
TTGTGTTGATAGATAACAAATATGTAGTTTTAGAAATGGGCACGTTGTAA
GTAGGGAAAGGGCGACGGAACGAACGAAGGTAACTGACGTAATTATGACT
GGTTCATGTTCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5179:1275..2986+

>mRNA_P-wetherbeei_contig5179.1.1 ID=mRNA_P-wetherbeei_contig5179.1.1|Name=mRNA_P-wetherbeei_contig5179.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1080bp|location=Sequence derived from alignment at P-wetherbeei_contig5179:1275..2986+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCATCCGTCAACCCAGCATCATGGGTTCGAGCATTGATAATGCGTT
CCGTCCGATGGCGGCCCTGCTGCGTGCCGACCCGGCCGTTGGCGGCCTCG
GCCTTTCGCAGCGAGAACTGAAAGTTGTCGTCATCCGGGAACCTTCCGTT
TTGGCGCTCTCCCTGGAATCGAATGTGGCGCCGAAGATTGCGGCGTTCCG
GCGGGAGGTCGGGGCGACCCCAGCGGAGCTGCGGAGCGCCATCTTGGCGT
CGCCGAACCTACTTACATGCAGCCTCGAACGGCGCGTGCTGCCGCGCATC
GCCACGATGCGGGAGGGCGGGGTAATGCCGCGGACCGTCCGCCGCGTCTT
TCGCCTGCTCATGTATTCGGAAACGAATTTCGCGCGCTGGCTCCAAACTC
GGCTGCGGACCACCTTATTTCTCGAGGAGCTCGGCGTCACGGCCCGCGAC
CTCCGGCTGATGCGGCGGCGGCACCGCCTGCTGCTCTCCCTCAGCGTCGC
CACCATCAGCCGCACCGCCGCCTTCCTGCGCGACGGCGTCGGCCTTTCCC
CGCCGGAGCTGCGCCGGGTGATCGTGCGGTTTCCGCAGGTGCTCGGCTGC
AGCCCGAAGGCGCTGGCGGCCAAGCGCGCCTTCTGTGTTGACGGCGACAA
CGGACTTGGATTGGACGACGACGGGCTGCGGGCAGTCGTCCTGGCGCAGC
CGTCCCTCCTCGGCCTCAGCGTCGAAGGTAACTTGGAGCCCAAGGTGAAA
CTCTTGTGCCGAGAAATGGGTGCCACTGTCGCCGAGTTGCGGGTGGCCGT
GTTGGCAAACCCGTCGCTTCTGGAGTATAGTTTGGAGCGACGAATACGGC
CGCGGCTCTTGTCGATGCGCGAGGCGGGGCTTCCCGTAAGAATCGGAAGC
GTGCGGCAGGTTTGCAAGCTGACGGACATTGCTTTTGACCGGTGGCTGGT
GGCGGCCCGCGGCGGGTTTGTGCGGCACACGGCGTACGTCGCACCGCTTG
GTGCAACGCCGTCTGCAGCAGCAGTTGACGCTGCGGGAGTGGCGGCCGCC
GGCGCTGCATTGGGAGGGATAGAGTGCTAG
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