mRNA_P-wetherbeei_contig5175.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5175.1.1
Unique NamemRNA_P-wetherbeei_contig5175.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5175.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5175contigP-wetherbeei_contig5175:110..2030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1921
Hectar predicted targeting categorysignal peptide
Exons1
Cds size1803
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186776.541164-UTR-P-wetherbeei_contig5175:109..2271683186776.541164-UTR-P-wetherbeei_contig5175:109..227Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5175 110..227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186776.5527215-CDS-P-wetherbeei_contig5175:227..20301683186776.5527215-CDS-P-wetherbeei_contig5175:227..2030Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5175 228..2030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5175.1.1prot_P-wetherbeei_contig5175.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5175 228..2030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5175.1.1

>prot_P-wetherbeei_contig5175.1.1 ID=prot_P-wetherbeei_contig5175.1.1|Name=mRNA_P-wetherbeei_contig5175.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=601bp
MHAVRSGFVAFLWIATSVLGLNPSCFLRKGNRPLTHHRPRFCSEARAAQQ
EQQVQQQQHNERHHDVLWQHPDSSQDGGEEGQSLEIHAHRQKHAQKSWQP
QPHELHLWATWEYMQQGLHNAFSEVSRFLGPGFPSWGTLPTLHHTLPTML
PLPWPAWVESATQQPADTTSDEAAEVDDDNASSPAPPSAGTSVSVVRRRW
GWPVSRRLRGTIRAMLTRSVSSPRGRQPTRLPNIYCGVSPLPVPAAERAA
AAAAAAAAAAAGPLEPLDVMTVSKADAKFRLASPVLSLTWEDTAGNRLLA
PHAAALDAAATNVTAAIETAKASKAATSEEAARVAASAVTASAAAAPTVV
PAGDASAASAAAAIAAGAAVGSWPSIPGMPWATPAGPIQQPRLSPEDIPA
AAVAAATRTPPLPPPPMPPPQQLQLPLASPPLPQDATISAAEAATAAATA
AAVAAAEEDVVVGYSIPVPKQMEITVNSGAGRRATAPPSGQVAAGQTGPV
PADWSAQGERMLRQLRLEQHRRRAVARTRDLHGAAVEPRLLEAAMAAAAA
APSRQAALQFSEQIGLDRLLRALAAPDAPAAAAPPPMALRGLSTLIDVNP
A
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mRNA from alignment at P-wetherbeei_contig5175:110..2030+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5175.1.1 ID=mRNA_P-wetherbeei_contig5175.1.1|Name=mRNA_P-wetherbeei_contig5175.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1921bp|location=Sequence derived from alignment at P-wetherbeei_contig5175:110..2030+ (Phaeothamnion wetherbeei SAG_119_79)
CCTCAGTTAAAGTGTTAAAGTACTGGTACCAGGAGCAGGTACCAGTTTCC
CGCGGGCAAAAGTAGCAACAGCTCTCTACTACCTGTAATTGTGGGATACC
TGCGGTTACGTGGGGTAGATGCACGCCGTTCGGTCGGGCTTCGTTGCCTT
TTTGTGGATCGCTACCTCGGTCCTTGGCCTCAACCCGTCTTGCTTTTTAC
GGAAAGGCAATAGACCTCTGACCCATCATCGACCTCGGTTCTGCAGCGAG
GCGCGGGCTGCTCAACAGGAGCAGCAGGTGCAACAGCAGCAGCACAACGA
GCGTCACCATGACGTGCTGTGGCAGCATCCTGATTCATCGCAAGACGGTG
GTGAGGAGGGACAAAGCCTGGAAATTCATGCTCACCGGCAAAAGCATGCC
CAAAAAAGCTGGCAACCGCAGCCTCACGAGCTCCATCTGTGGGCCACGTG
GGAATACATGCAGCAGGGGCTTCATAACGCTTTCAGTGAGGTCAGCAGGT
TCCTCGGGCCGGGGTTTCCTTCTTGGGGCACGCTCCCAACGCTCCACCAC
ACGCTACCGACGATGCTGCCGCTGCCATGGCCGGCATGGGTTGAGAGCGC
AACGCAGCAGCCCGCCGATACTACGTCGGACGAAGCTGCCGAGGTTGATG
ACGACAACGCCTCGTCGCCCGCCCCTCCCAGTGCGGGCACCTCGGTGTCG
GTGGTGCGACGGCGATGGGGTTGGCCTGTAAGCAGAAGGCTTCGTGGCAC
GATTCGCGCGATGCTGACGCGGTCGGTGTCCTCTCCGCGCGGCCGTCAGC
CTACGAGGCTGCCAAACATTTACTGCGGGGTATCGCCGCTGCCGGTGCCC
GCAGCGGAAAGGGCAGCAGCCGCAGCGGCCGCGGCGGCTGCTGCGGCGGC
AGGCCCGTTGGAACCGCTTGATGTAATGACCGTTTCAAAGGCCGACGCCA
AGTTTCGGCTGGCGTCGCCTGTCCTGTCGCTGACGTGGGAAGACACTGCA
GGGAACCGCCTGCTGGCACCGCATGCAGCGGCACTTGATGCCGCCGCCAC
CAATGTAACCGCCGCCATAGAGACGGCAAAAGCATCAAAGGCGGCAACGT
CGGAGGAGGCGGCGCGCGTCGCAGCTTCGGCCGTTACTGCCTCTGCCGCC
GCGGCGCCAACCGTTGTGCCTGCTGGCGATGCTTCGGCAGCCTCCGCAGC
CGCTGCCATCGCCGCCGGTGCTGCTGTTGGGTCGTGGCCGTCCATCCCGG
GAATGCCGTGGGCGACGCCTGCCGGTCCAATTCAGCAGCCCCGCCTCTCT
CCCGAGGACATTCCGGCCGCCGCGGTGGCCGCTGCCACGCGCACCCCGCC
CTTGCCGCCGCCGCCAATGCCGCCGCCGCAGCAGCTACAGCTGCCGCTGG
CTTCTCCGCCGCTGCCGCAGGACGCCACAATTTCCGCCGCCGAAGCGGCG
ACGGCGGCAGCTACCGCAGCGGCAGTGGCGGCGGCAGAGGAAGACGTTGT
CGTAGGGTACAGCATCCCCGTGCCGAAGCAGATGGAAATCACCGTCAATT
CTGGCGCCGGCAGGCGCGCGACCGCGCCGCCATCAGGGCAGGTGGCGGCG
GGACAGACGGGGCCGGTGCCGGCGGACTGGAGCGCCCAGGGCGAGCGCAT
GCTGCGGCAGCTGCGGCTGGAACAGCACCGCCGCCGGGCTGTCGCCCGCA
CGCGGGACCTTCACGGCGCCGCTGTGGAGCCGCGGCTGCTCGAGGCGGCC
ATGGCGGCGGCGGCGGCGGCACCTTCCCGCCAGGCTGCGCTGCAGTTCTC
CGAGCAGATTGGCTTGGACCGCCTGCTGCGTGCACTGGCAGCACCCGACG
CGCCGGCGGCCGCCGCGCCGCCGCCGATGGCGCTGCGCGGCCTCTCAACG
CTCATTGACGTCAACCCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5175:110..2030+

>mRNA_P-wetherbeei_contig5175.1.1 ID=mRNA_P-wetherbeei_contig5175.1.1|Name=mRNA_P-wetherbeei_contig5175.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1803bp|location=Sequence derived from alignment at P-wetherbeei_contig5175:110..2030+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGCCGTTCGGTCGGGCTTCGTTGCCTTTTTGTGGATCGCTACCTC
GGTCCTTGGCCTCAACCCGTCTTGCTTTTTACGGAAAGGCAATAGACCTC
TGACCCATCATCGACCTCGGTTCTGCAGCGAGGCGCGGGCTGCTCAACAG
GAGCAGCAGGTGCAACAGCAGCAGCACAACGAGCGTCACCATGACGTGCT
GTGGCAGCATCCTGATTCATCGCAAGACGGTGGTGAGGAGGGACAAAGCC
TGGAAATTCATGCTCACCGGCAAAAGCATGCCCAAAAAAGCTGGCAACCG
CAGCCTCACGAGCTCCATCTGTGGGCCACGTGGGAATACATGCAGCAGGG
GCTTCATAACGCTTTCAGTGAGGTCAGCAGGTTCCTCGGGCCGGGGTTTC
CTTCTTGGGGCACGCTCCCAACGCTCCACCACACGCTACCGACGATGCTG
CCGCTGCCATGGCCGGCATGGGTTGAGAGCGCAACGCAGCAGCCCGCCGA
TACTACGTCGGACGAAGCTGCCGAGGTTGATGACGACAACGCCTCGTCGC
CCGCCCCTCCCAGTGCGGGCACCTCGGTGTCGGTGGTGCGACGGCGATGG
GGTTGGCCTGTAAGCAGAAGGCTTCGTGGCACGATTCGCGCGATGCTGAC
GCGGTCGGTGTCCTCTCCGCGCGGCCGTCAGCCTACGAGGCTGCCAAACA
TTTACTGCGGGGTATCGCCGCTGCCGGTGCCCGCAGCGGAAAGGGCAGCA
GCCGCAGCGGCCGCGGCGGCTGCTGCGGCGGCAGGCCCGTTGGAACCGCT
TGATGTAATGACCGTTTCAAAGGCCGACGCCAAGTTTCGGCTGGCGTCGC
CTGTCCTGTCGCTGACGTGGGAAGACACTGCAGGGAACCGCCTGCTGGCA
CCGCATGCAGCGGCACTTGATGCCGCCGCCACCAATGTAACCGCCGCCAT
AGAGACGGCAAAAGCATCAAAGGCGGCAACGTCGGAGGAGGCGGCGCGCG
TCGCAGCTTCGGCCGTTACTGCCTCTGCCGCCGCGGCGCCAACCGTTGTG
CCTGCTGGCGATGCTTCGGCAGCCTCCGCAGCCGCTGCCATCGCCGCCGG
TGCTGCTGTTGGGTCGTGGCCGTCCATCCCGGGAATGCCGTGGGCGACGC
CTGCCGGTCCAATTCAGCAGCCCCGCCTCTCTCCCGAGGACATTCCGGCC
GCCGCGGTGGCCGCTGCCACGCGCACCCCGCCCTTGCCGCCGCCGCCAAT
GCCGCCGCCGCAGCAGCTACAGCTGCCGCTGGCTTCTCCGCCGCTGCCGC
AGGACGCCACAATTTCCGCCGCCGAAGCGGCGACGGCGGCAGCTACCGCA
GCGGCAGTGGCGGCGGCAGAGGAAGACGTTGTCGTAGGGTACAGCATCCC
CGTGCCGAAGCAGATGGAAATCACCGTCAATTCTGGCGCCGGCAGGCGCG
CGACCGCGCCGCCATCAGGGCAGGTGGCGGCGGGACAGACGGGGCCGGTG
CCGGCGGACTGGAGCGCCCAGGGCGAGCGCATGCTGCGGCAGCTGCGGCT
GGAACAGCACCGCCGCCGGGCTGTCGCCCGCACGCGGGACCTTCACGGCG
CCGCTGTGGAGCCGCGGCTGCTCGAGGCGGCCATGGCGGCGGCGGCGGCG
GCACCTTCCCGCCAGGCTGCGCTGCAGTTCTCCGAGCAGATTGGCTTGGA
CCGCCTGCTGCGTGCACTGGCAGCACCCGACGCGCCGGCGGCCGCCGCGC
CGCCGCCGATGGCGCTGCGCGGCCTCTCAACGCTCATTGACGTCAACCCG
GCG
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