mRNA_P-wetherbeei_contig51733.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51733.1.1
Unique NamemRNA_P-wetherbeei_contig51733.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51733.1.1 vs. uniprot
Match: A0A537RDS4_9PROT (CoA_binding domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537RDS4_9PROT)

HSP 1 Score: 223 bits (568), Expect = 2.200e-70
Identity = 115/175 (65.71%), Postives = 136/175 (77.71%), Query Frame = 1 
Query:    1 PPAPMSTHPLTPLMRPGSIAVLGASPRPNTLGNNAVANLQRFGYAGSIYPVHPSAPEVAGLRAYANLASLPGAPDCAVVALSSDKVIATLEEAAGRGVRAAVVFASGFAETDDAGRALQEDLEALCRRTGLVICGPNCLGLVNVTGRTSLYGSSVPEGLRAGGLAVVSHSGSGCI 525
            PP  +    L+PL+ P S+A++GASPR NTLGNN V NL+RFGYAG I PVHPSAPEVAGL AY   A LP   +CAV+A+ +DK+ A LEE A  G+RAAVVFASGFAE  + GRA Q++L+ALC RTG+V+CGPNCLGLVNV  R SLY S +PEG+R GGLAVVSHSGS CI
Sbjct:   79 PPMALPASRLSPLLAPRSVAIVGASPRENTLGNNVVVNLRRFGYAGRIMPVHPSAPEVAGLPAYRAFAELPEPAECAVLAVPADKIAAALEEGAAHGLRAAVVFASGFAELGEEGRARQQELQALCARTGIVLCGPNCLGLVNVHKRVSLYSSGIPEGMRDGGLAVVSHSGSACI 253
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BLAST of mRNA_P-wetherbeei_contig51733.1.1 vs. uniprot
Match: A0A6P2FZZ9_9BURK (Acetyl coenzyme A synthetase (ADP forming), alpha domain n=3 Tax=unclassified Variovorax TaxID=663243 RepID=A0A6P2FZZ9_9BURK)

HSP 1 Score: 217 bits (553), Expect = 1.390e-63
Identity = 113/178 (63.48%), Postives = 136/178 (76.40%), Query Frame = 1 
Query:    1 PPAPMSTHPL---TPLMRPGSIAVLGASPRPNTLGNNAVANLQRFGYAGSIYPVHPSAPEVAGLRAYANLASLPGAPDCAVVALSSDKVIATLEEAAGRGVRAAVVFASGFAETDDAGRALQEDLEALCRRTGLVICGPNCLGLVNVTGRTSLYGSSVPEGLRAGGLAVVSHSGSGCI 525
            P  P  T PL    PLMRP S+AVLGASPRP++ GN+ V NL   GY G IYP+HPSA EV GLR +A+L SLP APDCAV+AL +DKV+  L +AA RG+RAAV+FASGFAE  + GRALQ +L ALC+RTGL++CGPNCLGL N+  R SLY + +PE LR GG+A+ SHSGSGCI
Sbjct:   18 PALPAETAPLRDLAPLMRPSSVAVLGASPRPDSFGNSVVKNLLAGGYGGRIYPIHPSAAEVEGLRCFADLQSLPEAPDCAVIALPADKVLPALTQAAARGIRAAVLFASGFAELGNTGRALQAELTALCKRTGLLVCGPNCLGLANLHDRISLYSAPLPEPLRIGGVAIASHSGSGCI 195
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BLAST of mRNA_P-wetherbeei_contig51733.1.1 vs. uniprot
Match: A0A6P2E4H5_9BURK (Succinyl-CoA synthetase subunit beta n=3 Tax=unclassified Variovorax TaxID=663243 RepID=A0A6P2E4H5_9BURK)

HSP 1 Score: 216 bits (550), Expect = 2.980e-63
Identity = 111/166 (66.87%), Postives = 131/166 (78.92%), Query Frame = 1 
Query:   28 LTPLMRPGSIAVLGASPRPNTLGNNAVANLQRFGYAGSIYPVHPSAPEVAGLRAYANLASLPGAPDCAVVALSSDKVIATLEEAAGRGVRAAVVFASGFAETDDAGRALQEDLEALCRRTGLVICGPNCLGLVNVTGRTSLYGSSVPEGLRAGGLAVVSHSGSGCI 525
            LTPLMRP S+AVLGASPRP++ GN+ V NL   GY G IYP+HPSA EV GLR +A+L  LP APDCAVVAL +DKV+  L +AA RG+RAAVVFASGFAE  +AGRALQ +L  LC RTGL++CGPNCLGL N+  R SLY + +PE LR GG+A+ SHSGSGCI
Sbjct:   14 LTPLMRPASVAVLGASPRPDSFGNSVVKNLLAAGYEGLIYPIHPSAAEVEGLRCFADLQDLPEAPDCAVVALPADKVLPALTQAARRGLRAAVVFASGFAELGEAGRALQAELAELCARTGLLVCGPNCLGLANLHERISLYSAPLPEPLRVGGVAIASHSGSGCI 179
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BLAST of mRNA_P-wetherbeei_contig51733.1.1 vs. uniprot
Match: A0A2J7VY63_9BURK (ATP-grasp domain-containing protein n=2 Tax=unclassified Variovorax TaxID=663243 RepID=A0A2J7VY63_9BURK)

HSP 1 Score: 215 bits (547), Expect = 7.310e-63
Identity = 110/166 (66.27%), Postives = 132/166 (79.52%), Query Frame = 1 
Query:   28 LTPLMRPGSIAVLGASPRPNTLGNNAVANLQRFGYAGSIYPVHPSAPEVAGLRAYANLASLPGAPDCAVVALSSDKVIATLEEAAGRGVRAAVVFASGFAETDDAGRALQEDLEALCRRTGLVICGPNCLGLVNVTGRTSLYGSSVPEGLRAGGLAVVSHSGSGCI 525
            LTPLMRP S+AVLGASPRP++ GN+ V NL   GYAG IYP+HPSAP+V G+R +A+L  LP APDCAVVALS+DKV+  L +AA RGVRAAVVFASGFAE  +AGRALQ +L  L  +TGL++CGPNCLGL N+  R SLY + +PE  R GG+A+ SHSGSGCI
Sbjct:   14 LTPLMRPASVAVLGASPRPDSFGNSVVKNLLAAGYAGRIYPIHPSAPDVEGVRCFADLQDLPEAPDCAVVALSADKVLPALAQAAERGVRAAVVFASGFAELGEAGRALQVELATLSAQTGLLVCGPNCLGLANLHDRISLYSAPLPEPSRVGGVAIASHSGSGCI 179
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BLAST of mRNA_P-wetherbeei_contig51733.1.1 vs. uniprot
Match: A0A520FV01_9BURK (CoA-binding protein n=1 Tax=Variovorax sp. TaxID=1871043 RepID=A0A520FV01_9BURK)

HSP 1 Score: 209 bits (533), Expect = 6.710e-61
Identity = 108/166 (65.06%), Postives = 127/166 (76.51%), Query Frame = 1 
Query:   28 LTPLMRPGSIAVLGASPRPNTLGNNAVANLQRFGYAGSIYPVHPSAPEVAGLRAYANLASLPGAPDCAVVALSSDKVIATLEEAAGRGVRAAVVFASGFAETDDAGRALQEDLEALCRRTGLVICGPNCLGLVNVTGRTSLYGSSVPEGLRAGGLAVVSHSGSGCI 525
            LTPLMRP S+AVLGASPRP++ GN+ V NL   GYAG IYP+HPSA  V GL  +A+L  LP APDCAVVAL +DKV+  L +A  RG+RAAV+FASGFAE   AGRALQ DL ALC  TGL++CGPNCLGL N+    SLY + +PE LR GG+A+ SHSGSGCI
Sbjct:    4 LTPLMRPASVAVLGASPRPDSFGNSVVKNLLAGGYAGRIYPIHPSAQTVEGLPCFADLQDLPEAPDCAVVALPADKVLPALAQAVKRGLRAAVIFASGFAELGGAGRALQADLAALCAHTGLLVCGPNCLGLANLHDSISLYSAPLPEPLRVGGVAIASHSGSGCI 169
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BLAST of mRNA_P-wetherbeei_contig51733.1.1 vs. uniprot
Match: A0A244EH91_9BURK (CoA-binding protein n=2 Tax=Variovorax sp. JS1663 TaxID=1851577 RepID=A0A244EH91_9BURK)

HSP 1 Score: 209 bits (532), Expect = 8.480e-61
Identity = 106/162 (65.43%), Postives = 128/162 (79.01%), Query Frame = 1 
Query:   40 MRPGSIAVLGASPRPNTLGNNAVANLQRFGYAGSIYPVHPSAPEVAGLRAYANLASLPGAPDCAVVALSSDKVIATLEEAAGRGVRAAVVFASGFAETDDAGRALQEDLEALCRRTGLVICGPNCLGLVNVTGRTSLYGSSVPEGLRAGGLAVVSHSGSGCI 525
            MRP S+AVLGASPRP++ G++ V NL   GYAG +YP+HPSAPEV GLR +ANL SLP APDCAVVAL +DKV+  L +AA RG+RAAV+FASGFAE  + GRALQ +L ALC RTGL++CGPNCLGL N+    SLY + +PE L  GG+A+ SHSGSGCI
Sbjct:    1 MRPASVAVLGASPRPDSFGHSVVRNLLDAGYAGRLYPIHPSAPEVLGLRCHANLDSLPEAPDCAVVALPADKVLPALAQAAARGIRAAVLFASGFAELGEEGRALQAELAALCARTGLLVCGPNCLGLANLHAGISLYSAPLPEPLVRGGVAIASHSGSGCI 162
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BLAST of mRNA_P-wetherbeei_contig51733.1.1 vs. uniprot
Match: A0A6J5K484_9BURK (Trans-feruloyl-CoA synthase FCS1 n=3 Tax=Paraburkholderia TaxID=1822464 RepID=A0A6J5K484_9BURK)

HSP 1 Score: 206 bits (525), Expect = 1.070e-59
Identity = 104/168 (61.90%), Postives = 125/168 (74.40%), Query Frame = 1 
Query:   22 HPLTPLMRPGSIAVLGASPRPNTLGNNAVANLQRFGYAGSIYPVHPSAPEVAGLRAYANLASLPGAPDCAVVALSSDKVIATLEEAAGRGVRAAVVFASGFAETDDAGRALQEDLEALCRRTGLVICGPNCLGLVNVTGRTSLYGSSVPEGLRAGGLAVVSHSGSGCI 525
            HPL+PL+ P SIAVLGASPR   LGN  + NLQR GYAG+IYPVHP APEV G+ AYANL  +PG+ DCAV+ALS DK +  LE    RGVR AV++ASGFAET   G ALQE L   C + G+ +CGPNCLGL +V  R SLY +++PE LR GGL+++SHSGS CI
Sbjct:    2 HPLSPLLNPNSIAVLGASPRAEALGNTVIRNLQRIGYAGAIYPVHPGAPEVLGIPAYANLDDIPGSVDCAVIALSYDKALPALEALNARGVRNAVLYASGFAETGAEGAALQEQLTRYCNQNGINLCGPNCLGLYSVASRVSLYSAALPENLRPGGLSLLSHSGSACI 169
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BLAST of mRNA_P-wetherbeei_contig51733.1.1 vs. uniprot
Match: A0A2P8K8R4_9BURK (CoA-binding protein n=1 Tax=Variovorax sp. WS11 TaxID=1105204 RepID=A0A2P8K8R4_9BURK)

HSP 1 Score: 199 bits (506), Expect = 5.490e-57
Identity = 105/166 (63.25%), Postives = 122/166 (73.49%), Query Frame = 1 
Query:   28 LTPLMRPGSIAVLGASPRPNTLGNNAVANLQRFGYAGSIYPVHPSAPEVAGLRAYANLASLPGAPDCAVVALSSDKVIATLEEAAGRGVRAAVVFASGFAETDDAGRALQEDLEALCRRTGLVICGPNCLGLVNVTGRTSLYGSSVPEGLRAGGLAVVSHSGSGCI 525
            LTPLMRP S+AVLGAS RP +LGN  + NL   GY G I+PVHP+A EV GLR ++ L  LP  PDC  VALS+DKVI  LEEAA  GVRAAVVFASGFAET +AG  LQ  L  LC RTGL++CGPNCLGL NV G  +LY + +P+   AGG+AV SHSGS C+
Sbjct:    4 LTPLMRPASVAVLGASERPESLGNRVMKNLVATGYRGRIFPVHPTALEVEGLRCFSGLRGLPEVPDCVAVALSADKVIDALEEAAACGVRAAVVFASGFAETGEAGAGLQARLAVLCERTGLLVCGPNCLGLSNVQGGVALYSAPLPQPPLAGGVAVASHSGSACV 169
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BLAST of mRNA_P-wetherbeei_contig51733.1.1 vs. uniprot
Match: UPI0009F8F219 (acetate--CoA ligase family protein n=1 Tax=Variovorax sp. KK3 TaxID=1855728 RepID=UPI0009F8F219)

HSP 1 Score: 187 bits (476), Expect = 1.030e-52
Identity = 98/166 (59.04%), Postives = 119/166 (71.69%), Query Frame = 1 
Query:   28 LTPLMRPGSIAVLGASPRPNTLGNNAVANLQRFGYAGSIYPVHPSAPEVAGLRAYANLASLPGAPDCAVVALSSDKVIATLEEAAGRGVRAAVVFASGFAETDDAGRALQEDLEALCRRTGLVICGPNCLGLVNVTGRTSLYGSSVPEGLRAGGLAVVSHSGSGCI 525
            L PL+RP S+AVLGAS RP  LG+  + NL   GY G I+PVHPSA EV GL  + +L SLP  PDC  VAL++D+V+  L+EAA  G+RAAVVFASGFAET   G ALQ  L  LC RTGL++CGPNCLGL NV GR +LY + +P   +AG +AV SHSGS C+
Sbjct:    4 LAPLLRPASVAVLGASTRPEALGHRVMKNLIAVGYPGRIFPVHPSAVEVEGLGCFRDLRSLPEVPDCVAVALAADRVVEALDEAARCGIRAAVVFASGFAETGAEGGALQAQLAELCERTGLIVCGPNCLGLSNVHGRMALYSAPLPVPQQAGAVAVASHSGSACV 169
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BLAST of mRNA_P-wetherbeei_contig51733.1.1 vs. uniprot
Match: A0A1I5V7S6_9BURK (Acyl-CoA synthetase (NDP forming) n=3 Tax=unclassified Variovorax TaxID=663243 RepID=A0A1I5V7S6_9BURK)

HSP 1 Score: 186 bits (471), Expect = 5.280e-52
Identity = 96/163 (58.90%), Postives = 120/163 (73.62%), Query Frame = 1 
Query:   37 LMRPGSIAVLGASPRPNTLGNNAVANLQRFGYAGSIYPVHPSAPEVAGLRAYANLASLPGAPDCAVVALSSDKVIATLEEAAGRGVRAAVVFASGFAETDDAGRALQEDLEALCRRTGLVICGPNCLGLVNVTGRTSLYGSSVPEGLRAGGLAVVSHSGSGCI 525
            L RP ++AVLGASPR + +G     NL+  GYAG IYP+HP+A EV G+  Y +LASLP  PDCAVVALS+DKV+  L +AA +GV++AVVFASGFAE    G ALQ     L  +TGL++CGPNCLGL++V  RT+LY +  P+ L AGG+AVVSHSGS CI
Sbjct:    8 LFRPAAVAVLGASPRADAMGTYVARNLRDGGYAGEIYPIHPTATEVEGMHCYPDLASLPRVPDCAVVALSADKVMGALRDAAAQGVKSAVVFASGFAELGAEGAALQRQFAELHAQTGLLVCGPNCLGLIDVHARTALYSAPPPDPLPAGGVAVVSHSGSACI 170
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51733.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537RDS4_9PROT2.200e-7065.71CoA_binding domain-containing protein n=1 Tax=Alph... [more]
A0A6P2FZZ9_9BURK1.390e-6363.48Acetyl coenzyme A synthetase (ADP forming), alpha ... [more]
A0A6P2E4H5_9BURK2.980e-6366.87Succinyl-CoA synthetase subunit beta n=3 Tax=uncla... [more]
A0A2J7VY63_9BURK7.310e-6366.27ATP-grasp domain-containing protein n=2 Tax=unclas... [more]
A0A520FV01_9BURK6.710e-6165.06CoA-binding protein n=1 Tax=Variovorax sp. TaxID=1... [more]
A0A244EH91_9BURK8.480e-6165.43CoA-binding protein n=2 Tax=Variovorax sp. JS1663 ... [more]
A0A6J5K484_9BURK1.070e-5961.90Trans-feruloyl-CoA synthase FCS1 n=3 Tax=Paraburkh... [more]
A0A2P8K8R4_9BURK5.490e-5763.25CoA-binding protein n=1 Tax=Variovorax sp. WS11 Ta... [more]
UPI0009F8F2191.030e-5259.04acetate--CoA ligase family protein n=1 Tax=Variovo... [more]
A0A1I5V7S6_9BURK5.280e-5258.90Acyl-CoA synthetase (NDP forming) n=3 Tax=unclassi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51733contigP-wetherbeei_contig51733:25..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog391038.Bphy_3178
PFAMsATP-grasp_5,Acetyltransf_3,CoA_binding_2,Succ_CoA_lig
Model size525
Max annot lvl28216|Betaproteobacteria
KEGG koko:K09181
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.05e-61
EggNOG OGsCOG0045@1|root,COG1042@1|root,COG0045@2|Bacteria,COG1042@2|Bacteria,1MW98@1224|Proteobacteria,2VI9R@28216|Betaproteobacteria,1K035@119060|Burkholderiaceae
DescriptionCoA-binding domain protein
Cds size513
COG categoryC
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186776.4772887-UTR-P-wetherbeei_contig51733:24..361683186776.4772887-UTR-P-wetherbeei_contig51733:24..36Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig51733 25..36 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186776.486283-CDS-P-wetherbeei_contig51733:36..5491683186776.486283-CDS-P-wetherbeei_contig51733:36..549Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51733 37..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51733.1.1prot_P-wetherbeei_contig51733.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51733 37..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51733.1.1

>prot_P-wetherbeei_contig51733.1.1 ID=prot_P-wetherbeei_contig51733.1.1|Name=mRNA_P-wetherbeei_contig51733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
MSTHPLTPLMRPGSIAVLGASPRPNTLGNNAVANLQRFGYAGSIYPVHPS
APEVAGLRAYANLASLPGAPDCAVVALSSDKVIATLEEAAGRGVRAAVVF
ASGFAETDDAGRALQEDLEALCRRTGLVICGPNCLGLVNVTGRTSLYGSS
VPEGLRAGGLAVVSHSGSGCI
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mRNA from alignment at P-wetherbeei_contig51733:25..549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51733.1.1 ID=mRNA_P-wetherbeei_contig51733.1.1|Name=mRNA_P-wetherbeei_contig51733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig51733:25..549+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCCGGCACCGATGAGCACCCATCCCCTGACGCCGCTGATGCGGCCCGG
CTCCATCGCCGTGCTTGGCGCCTCGCCGCGCCCCAACACGCTGGGGAACA
ACGCCGTGGCGAACCTGCAGCGCTTCGGCTATGCGGGCAGCATCTACCCC
GTGCACCCGAGCGCACCGGAGGTCGCAGGTCTCAGGGCCTATGCAAATCT
TGCATCGCTCCCGGGGGCGCCGGACTGCGCGGTGGTGGCGCTGTCTTCCG
ACAAGGTCATCGCGACGCTCGAGGAAGCCGCCGGGCGCGGCGTGCGTGCC
GCCGTCGTGTTCGCGAGCGGCTTCGCCGAGACCGACGACGCCGGCCGCGC
GCTGCAGGAGGACCTCGAGGCGCTTTGCAGGCGCACGGGCCTCGTCATCT
GCGGGCCGAACTGCCTCGGCCTCGTCAATGTCACGGGCCGCACTTCGCTT
TACGGTTCCTCCGTGCCCGAGGGCCTGCGCGCCGGCGGGCTCGCGGTGGT
CTCGCATTCGGGCTCGGGCTGCATA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51733:25..549+

>mRNA_P-wetherbeei_contig51733.1.1 ID=mRNA_P-wetherbeei_contig51733.1.1|Name=mRNA_P-wetherbeei_contig51733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig51733:25..549+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCACCCATCCCCTGACGCCGCTGATGCGGCCCGGCTCCATCGCCGT
GCTTGGCGCCTCGCCGCGCCCCAACACGCTGGGGAACAACGCCGTGGCGA
ACCTGCAGCGCTTCGGCTATGCGGGCAGCATCTACCCCGTGCACCCGAGC
GCACCGGAGGTCGCAGGTCTCAGGGCCTATGCAAATCTTGCATCGCTCCC
GGGGGCGCCGGACTGCGCGGTGGTGGCGCTGTCTTCCGACAAGGTCATCG
CGACGCTCGAGGAAGCCGCCGGGCGCGGCGTGCGTGCCGCCGTCGTGTTC
GCGAGCGGCTTCGCCGAGACCGACGACGCCGGCCGCGCGCTGCAGGAGGA
CCTCGAGGCGCTTTGCAGGCGCACGGGCCTCGTCATCTGCGGGCCGAACT
GCCTCGGCCTCGTCAATGTCACGGGCCGCACTTCGCTTTACGGTTCCTCC
GTGCCCGAGGGCCTGCGCGCCGGCGGGCTCGCGGTGGTCTCGCATTCGGG
CTCGGGCTGCATA
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