mRNA_P-wetherbeei_contig5172.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig5172.1.1
Unique Name	mRNA_P-wetherbeei_contig5172.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig5172.1.1 vs. uniprot
Match: A0A835YGR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGR8_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.770e-16
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 1

Query: 1318 RLSAVLYKQRDSLQTRWNYRRRYFVLSPTGGGGGAAQDTDGPSLRYYKNRRDAKSEKVVPLAGAFVAQATHMQGNLYPFSVIPPDGRPIILASESKAEACAWVTALTA 1641
            R    L+KQRD+LQTRW YR+RYFVL+   GGGG A       LR+      +KS++  P   A V   +H  G+L+PF++IP +G+P ++A+ SKAE   WV A+TA
Sbjct:  460 RKEGYLFKQRDTLQTRWTYRQRYFVLAARAGGGGVA-------LRF------SKSKEASPTRSASVLVGSHQHGDLHPFTIIPVEGKPCMVATTSKAECQEWVDAITA 554

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BLAST of mRNA_P-wetherbeei_contig5172.1.1 vs. uniprot
Match: D7FK06_ECTSI (CRAL/TRIO domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK06_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 8.980e-16
Identity = 48/103 (46.60%), Postives = 67/103 (65.05%), Query Frame = 1

Query:    1 ILPLQLLKLTAPILENNFPERQHATYILPVGTMIVMAWKVVATLIDPGTAHKIRLVTGFEHPFLLEHFAPAALRCMVDGDAAAAAAMPRPWTEADRRTAAPPP 309
            ++  +L K+  PI+ENNFPE QHATY+LP   +I+MAWKV+++ IDPGTA KIRLV  F+ P L++ F+P  L+  V      + A P+P+   D     PPP
Sbjct:  171 VMDRKLFKVATPIIENNFPETQHATYVLPCNGVIMMAWKVISSFIDPGTADKIRLVKDFDDPALVKAFSPETLKAFVA--VKPSMAPPQPYVAPDPLANPPPP 271

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BLAST of mRNA_P-wetherbeei_contig5172.1.1 vs. uniprot
Match: A0A6H5KAS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS6_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 7.610e-12
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1

Query:   13 QLLKLTAPILENNFPERQHATYILPVGTMIVMAWK----------------VVATLIDPGTAHKIRLVTGFEHPFLLEHFAPAALRCMV 231
            +L K+  PI+ENNFPE QHATY+LP   MI+MAWK                V+++ IDPGTA KIRL   F+ P L++ F+P  L+  +
Sbjct:  137 KLFKVATPIIENNFPETQHATYVLPCNGMIMMAWKGSAAAARRFMFLLGEKVISSFIDPGTADKIRLCKDFDDPALVKAFSPETLKAFI 225

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig5172.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig5172.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835YGR8_9STRA	2.770e-16	45.37	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7FK06_ECTSI	8.980e-16	46.60	CRAL/TRIO domain containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KAS6_9PHAE	7.610e-12	44.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig5172	contig	P-wetherbeei_contig5172:1244..3962 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	2880.D7FK06
PFAMs	CRAL_TRIO,VIT,VWA
Model size	2719
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15335,ko:K19625
Hectar predicted targeting category	other localisation
Exons	1
Evalue	1.47e-16
EggNOG OGs	KOG1471@1\|root,KOG1471@2759\|Eukaryota
EC	2.1.1.203
Description	macromolecule localization
Cds size	2718
COG category	S
BRITE	ko00000,ko01000,ko03016

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186776.3520463-CDS-P-wetherbeei_contig5172:1244..3962	1683186776.3520463-CDS-P-wetherbeei_contig5172:1244..3962	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig5172 1245..3962 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig5172.1.1	prot_P-wetherbeei_contig5172.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig5172 1245..3962 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig5172:1244..3962-
coding sequence from alignment at P-wetherbeei_contig5172:1244..3962-

protein sequence of mRNA_P-wetherbeei_contig5172.1.1

>prot_P-wetherbeei_contig5172.1.1 ID=prot_P-wetherbeei_contig5172.1.1|Name=mRNA_P-wetherbeei_contig5172.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=906bp
ILPLQLLKLTAPILENNFPERQHATYILPVGTMIVMAWKVVATLIDPGTA
HKIRLVTGFEHPFLLEHFAPAALRCMVDGDAAAAAAMPRPWTEADRRTAA
PPPLPPHVRAAAGLPPLPLAVLTPPAAPVAAPVAASVAASTAKPMIPVSA
VAFTKGFDASIVAENIALPAPPPAIVATRPDSTHFTGSAAAEAAKDERTP
SAVATSTVAAAAAAAAAAEAVPAATEETAADGSSGSLRPEAMAAMAVLLR
RGSFTDSSAASTPPTTPLQMSAGTRGAEGSPDFGHSDDADGVMVEDAGGG
GGSNGESSGGGACEDRGGEGVGGLCGPGGVRHSMVSMGSSSSGGGSSLAC
ITDGLDSVAVMDVAAWDGGRFSPVPPPRRFMSSAAVAALAAELAGAAADT
HNSSFSSVGESSNVGGGIGGGIGREGADDTCSAGPLPVPRLSAVLYKQRD
SLQTRWNYRRRYFVLSPTGGGGGAAQDTDGPSLRYYKNRRDAKSEKVVPL
AGAFVAQATHMQGNLYPFSVIPPDGRPIILASESKAEACAWVTALTAGAA
AAGAVIVAATVPAAGSAHHHSGGRSMGRGGGGSSASAPGPYVSFPGAAEL
LEEQRRDSRTGSNASAGGGGGSYGGGYAGGYSAAYRQPDDAGSEGVSFHP
LDVLARALAGAGAATPALMEHYRRGKFGGIDGGSSGGGRGGDGGGRGGND
TAWMSPPTMAPAAAAGWARAATAAAATAVSAGSARMSPGAMAATAAAATG
AMAAAGAGTVSVGGGSPSTAASSAVESPAPRGTPPSGRRRRSDGTDGTPR
ARQGSRPWLLLTPSWPPTRGAAAGGGHPAHVTTPSTTGGHLLASPQQYGE
LDRLRLAFTRSEGENRRLRQCLGLLARRVVDGEAATKAPAIAESGGDGGA
AFAAGS

mRNA from alignment at P-wetherbeei_contig5172:1244..3962-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig5172.1.1 ID=mRNA_P-wetherbeei_contig5172.1.1|Name=mRNA_P-wetherbeei_contig5172.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2719bp|location=Sequence derived from alignment at P-wetherbeei_contig5172:1244..3962- (Phaeothamnion wetherbeei SAG_119_79)
ATCTTGCCGCTGCAGCTGCTCAAGCTGACGGCGCCCATCCTCGAGAACAA
CTTTCCGGAGCGGCAGCACGCCACCTACATCCTTCCAGTCGGCACAATGA
TCGTCATGGCCTGGAAGGTCGTAGCCACGCTTATTGACCCCGGCACAGCC
CACAAGATTCGCCTCGTCACCGGATTTGAGCACCCTTTCCTGCTAGAGCA
CTTCGCGCCGGCAGCGTTGCGTTGCATGGTGGACGGCGACGCGGCTGCGG
CCGCCGCAATGCCGCGGCCATGGACGGAGGCAGACCGGCGGACAGCGGCA
CCGCCGCCGCTGCCGCCGCACGTGCGCGCGGCCGCCGGGCTCCCGCCGCT
GCCTTTAGCGGTACTAACACCGCCGGCGGCTCCGGTGGCAGCTCCGGTGG
CAGCTTCGGTGGCAGCTTCGACAGCAAAACCAATGATTCCGGTGTCAGCG
GTAGCATTTACCAAGGGGTTCGACGCTAGCATCGTCGCTGAAAATATCGC
GCTCCCGGCGCCGCCGCCTGCAATTGTGGCAACGAGGCCAGATTCTACGC
ATTTTACAGGGTCAGCAGCGGCGGAAGCTGCGAAGGATGAGAGAACTCCA
TCAGCAGTGGCGACATCGACGGTGGCAGCAGCGGCAGCGGCAGCAGCGGC
GGCAGAGGCGGTGCCGGCAGCAACGGAGGAGACTGCCGCTGATGGCAGCA
GCGGTTCGCTTCGGCCCGAAGCGATGGCTGCGATGGCAGTGTTGCTCCGC
CGCGGGTCCTTCACGGACTCATCTGCTGCATCAACGCCGCCAACCACACC
GCTCCAAATGTCCGCGGGTACTAGAGGCGCAGAGGGCAGCCCCGACTTTG
GCCACAGCGATGACGCCGACGGCGTAATGGTTGAGGATGCTGGTGGTGGC
GGCGGCAGCAACGGCGAGTCTAGCGGTGGCGGCGCCTGTGAGGACCGCGG
CGGCGAAGGCGTTGGCGGCCTTTGCGGCCCCGGCGGCGTGCGGCACTCCA
TGGTGAGTATGGGGAGCAGCAGCAGCGGCGGCGGCAGCTCGCTCGCTTGC
ATCACCGACGGACTGGACAGCGTCGCCGTGATGGACGTGGCGGCGTGGGA
CGGCGGCCGCTTCTCACCCGTGCCACCGCCGCGGCGGTTCATGTCCAGCG
CGGCCGTGGCGGCGCTCGCGGCGGAATTGGCCGGAGCGGCTGCCGACACC
CACAACAGCTCGTTTAGCTCGGTCGGAGAGTCGTCGAATGTGGGTGGCGG
CATCGGCGGCGGCATTGGCCGCGAAGGCGCGGACGACACGTGTTCTGCCG
GCCCGCTGCCGGTGCCGCGCCTATCCGCGGTGCTTTACAAGCAGCGTGAC
AGCCTCCAGACCCGATGGAACTACCGCCGTCGTTACTTTGTCCTTTCACC
GACCGGCGGCGGCGGCGGCGCTGCTCAAGACACCGACGGGCCGTCATTGC
GATACTACAAGAACCGCCGCGACGCCAAGTCTGAAAAGGTCGTGCCGTTG
GCGGGGGCGTTCGTGGCACAGGCGACGCACATGCAGGGCAACCTCTATCC
TTTTTCGGTCATCCCGCCCGACGGGCGGCCCATCATCCTTGCTTCAGAGT
CCAAGGCCGAGGCCTGCGCCTGGGTCACGGCGCTGACCGCCGGTGCCGCC
GCTGCCGGCGCCGTGATTGTCGCCGCAACCGTCCCAGCGGCCGGGTCCGC
GCACCACCACAGCGGCGGACGCAGCATGGGCCGCGGCGGTGGGGGCAGCA
GCGCATCGGCTCCTGGGCCGTATGTGTCATTTCCCGGCGCGGCGGAGCTT
CTCGAGGAGCAGCGCCGGGACAGCCGGACTGGGAGCAACGCCAGCGCGGG
CGGCGGTGGCGGCAGCTACGGCGGCGGTTATGCGGGCGGTTACAGCGCCG
CCTACCGGCAGCCCGACGATGCCGGCAGCGAGGGCGTGTCTTTCCACCCT
CTGGATGTCTTGGCGCGGGCGCTGGCCGGGGCGGGGGCAGCGACTCCGGC
GCTCATGGAGCATTACCGCCGCGGCAAATTCGGCGGCATCGACGGCGGCA
GCAGCGGCGGCGGCCGCGGTGGCGACGGCGGAGGCAGGGGGGGGAACGAC
ACCGCGTGGATGTCTCCGCCTACGATGGCACCGGCGGCAGCCGCCGGCTG
GGCCAGGGCTGCAACGGCAGCGGCCGCGACGGCGGTGTCGGCAGGATCGG
CGAGGATGAGTCCAGGCGCCATGGCTGCGACGGCGGCGGCAGCGACTGGG
GCGATGGCGGCGGCGGGTGCGGGGACAGTCTCAGTTGGCGGGGGAAGTCC
GTCGACGGCGGCGTCGAGCGCGGTGGAAAGTCCCGCGCCGCGCGGCACAC
CGCCATCGGGCCGGCGGCGACGTTCTGACGGCACGGACGGCACGCCCCGA
GCGCGGCAGGGCTCCCGGCCCTGGCTGCTGCTGACGCCGTCGTGGCCGCC
GACACGGGGGGCGGCGGCCGGCGGCGGCCACCCGGCCCACGTGACGACGC
CGTCGACGACAGGAGGGCACTTGCTTGCATCGCCGCAGCAGTATGGGGAG
CTGGATCGCCTGCGGCTCGCGTTCACGCGCTCTGAGGGCGAGAACCGGCG
GCTGCGGCAATGCCTGGGGCTGCTGGCACGCCGCGTTGTGGATGGCGAGG
CGGCGACGAAAGCGCCGGCTATCGCGGAAAGTGGGGGCGACGGCGGCGCC
GCATTTGCTGCCGGGTCAA

Coding sequence (CDS) from alignment at P-wetherbeei_contig5172:1244..3962-

>mRNA_P-wetherbeei_contig5172.1.1 ID=mRNA_P-wetherbeei_contig5172.1.1|Name=mRNA_P-wetherbeei_contig5172.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2718bp|location=Sequence derived from alignment at P-wetherbeei_contig5172:1244..3962- (Phaeothamnion wetherbeei SAG_119_79)
ATCTTGCCGCTGCAGCTGCTCAAGCTGACGGCGCCCATCCTCGAGAACAA
CTTTCCGGAGCGGCAGCACGCCACCTACATCCTTCCAGTCGGCACAATGA
TCGTCATGGCCTGGAAGGTCGTAGCCACGCTTATTGACCCCGGCACAGCC
CACAAGATTCGCCTCGTCACCGGATTTGAGCACCCTTTCCTGCTAGAGCA
CTTCGCGCCGGCAGCGTTGCGTTGCATGGTGGACGGCGACGCGGCTGCGG
CCGCCGCAATGCCGCGGCCATGGACGGAGGCAGACCGGCGGACAGCGGCA
CCGCCGCCGCTGCCGCCGCACGTGCGCGCGGCCGCCGGGCTCCCGCCGCT
GCCTTTAGCGGTACTAACACCGCCGGCGGCTCCGGTGGCAGCTCCGGTGG
CAGCTTCGGTGGCAGCTTCGACAGCAAAACCAATGATTCCGGTGTCAGCG
GTAGCATTTACCAAGGGGTTCGACGCTAGCATCGTCGCTGAAAATATCGC
GCTCCCGGCGCCGCCGCCTGCAATTGTGGCAACGAGGCCAGATTCTACGC
ATTTTACAGGGTCAGCAGCGGCGGAAGCTGCGAAGGATGAGAGAACTCCA
TCAGCAGTGGCGACATCGACGGTGGCAGCAGCGGCAGCGGCAGCAGCGGC
GGCAGAGGCGGTGCCGGCAGCAACGGAGGAGACTGCCGCTGATGGCAGCA
GCGGTTCGCTTCGGCCCGAAGCGATGGCTGCGATGGCAGTGTTGCTCCGC
CGCGGGTCCTTCACGGACTCATCTGCTGCATCAACGCCGCCAACCACACC
GCTCCAAATGTCCGCGGGTACTAGAGGCGCAGAGGGCAGCCCCGACTTTG
GCCACAGCGATGACGCCGACGGCGTAATGGTTGAGGATGCTGGTGGTGGC
GGCGGCAGCAACGGCGAGTCTAGCGGTGGCGGCGCCTGTGAGGACCGCGG
CGGCGAAGGCGTTGGCGGCCTTTGCGGCCCCGGCGGCGTGCGGCACTCCA
TGGTGAGTATGGGGAGCAGCAGCAGCGGCGGCGGCAGCTCGCTCGCTTGC
ATCACCGACGGACTGGACAGCGTCGCCGTGATGGACGTGGCGGCGTGGGA
CGGCGGCCGCTTCTCACCCGTGCCACCGCCGCGGCGGTTCATGTCCAGCG
CGGCCGTGGCGGCGCTCGCGGCGGAATTGGCCGGAGCGGCTGCCGACACC
CACAACAGCTCGTTTAGCTCGGTCGGAGAGTCGTCGAATGTGGGTGGCGG
CATCGGCGGCGGCATTGGCCGCGAAGGCGCGGACGACACGTGTTCTGCCG
GCCCGCTGCCGGTGCCGCGCCTATCCGCGGTGCTTTACAAGCAGCGTGAC
AGCCTCCAGACCCGATGGAACTACCGCCGTCGTTACTTTGTCCTTTCACC
GACCGGCGGCGGCGGCGGCGCTGCTCAAGACACCGACGGGCCGTCATTGC
GATACTACAAGAACCGCCGCGACGCCAAGTCTGAAAAGGTCGTGCCGTTG
GCGGGGGCGTTCGTGGCACAGGCGACGCACATGCAGGGCAACCTCTATCC
TTTTTCGGTCATCCCGCCCGACGGGCGGCCCATCATCCTTGCTTCAGAGT
CCAAGGCCGAGGCCTGCGCCTGGGTCACGGCGCTGACCGCCGGTGCCGCC
GCTGCCGGCGCCGTGATTGTCGCCGCAACCGTCCCAGCGGCCGGGTCCGC
GCACCACCACAGCGGCGGACGCAGCATGGGCCGCGGCGGTGGGGGCAGCA
GCGCATCGGCTCCTGGGCCGTATGTGTCATTTCCCGGCGCGGCGGAGCTT
CTCGAGGAGCAGCGCCGGGACAGCCGGACTGGGAGCAACGCCAGCGCGGG
CGGCGGTGGCGGCAGCTACGGCGGCGGTTATGCGGGCGGTTACAGCGCCG
CCTACCGGCAGCCCGACGATGCCGGCAGCGAGGGCGTGTCTTTCCACCCT
CTGGATGTCTTGGCGCGGGCGCTGGCCGGGGCGGGGGCAGCGACTCCGGC
GCTCATGGAGCATTACCGCCGCGGCAAATTCGGCGGCATCGACGGCGGCA
GCAGCGGCGGCGGCCGCGGTGGCGACGGCGGAGGCAGGGGGGGGAACGAC
ACCGCGTGGATGTCTCCGCCTACGATGGCACCGGCGGCAGCCGCCGGCTG
GGCCAGGGCTGCAACGGCAGCGGCCGCGACGGCGGTGTCGGCAGGATCGG
CGAGGATGAGTCCAGGCGCCATGGCTGCGACGGCGGCGGCAGCGACTGGG
GCGATGGCGGCGGCGGGTGCGGGGACAGTCTCAGTTGGCGGGGGAAGTCC
GTCGACGGCGGCGTCGAGCGCGGTGGAAAGTCCCGCGCCGCGCGGCACAC
CGCCATCGGGCCGGCGGCGACGTTCTGACGGCACGGACGGCACGCCCCGA
GCGCGGCAGGGCTCCCGGCCCTGGCTGCTGCTGACGCCGTCGTGGCCGCC
GACACGGGGGGCGGCGGCCGGCGGCGGCCACCCGGCCCACGTGACGACGC
CGTCGACGACAGGAGGGCACTTGCTTGCATCGCCGCAGCAGTATGGGGAG
CTGGATCGCCTGCGGCTCGCGTTCACGCGCTCTGAGGGCGAGAACCGGCG
GCTGCGGCAATGCCTGGGGCTGCTGGCACGCCGCGTTGTGGATGGCGAGG
CGGCGACGAAAGCGCCGGCTATCGCGGAAAGTGGGGGCGACGGCGGCGCC
GCATTTGCTGCCGGGTCA