mRNA_P-wetherbeei_contig51718.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51718.1.1
Unique NamemRNA_P-wetherbeei_contig51718.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51718.1.1 vs. uniprot
Match: A0A6N0HYZ4_9GAMM (Low-complexity protein n=2 Tax=Gammaproteobacteria incertae sedis TaxID=118884 RepID=A0A6N0HYZ4_9GAMM)

HSP 1 Score: 58.9 bits (141), Expect = 5.450e-9
Identity = 35/62 (56.45%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:   34 LAALGTSFAVSLVATPMAYAEGNPFAAVEYQGGYMVAADEAKCGASMGEGKCGGAASDAKAE 219
            +AALGT+FAVSL A PMA A  NPF   E   GYMVA + A      GE KCGGA +D KA+
Sbjct:   11 IAALGTAFAVSLAAAPMANAAENPFQMTELSSGYMVADNHAGKEGKCGEAKCGGAKADDKAK 72
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BLAST of mRNA_P-wetherbeei_contig51718.1.1 vs. uniprot
Match: A0A1G0K9G2_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13 TaxID=1798300 RepID=A0A1G0K9G2_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 1.820e-7
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:    4 MEKKSPTRPLLAALGTSFAVSLVATPMAYAEGNPFAAVEYQGGYMVAADEAKCGASMGEGK 186
            M +    RP+ AALGT+FAVSL  +P+A AE NPF+  E  GGYMVA   A+   S GEGK
Sbjct:    1 MSRHITLRPIAAALGTTFAVSLALSPIASAEQNPFSLTELSGGYMVADSHAE--GSCGEGK 59
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BLAST of mRNA_P-wetherbeei_contig51718.1.1 vs. uniprot
Match: A0A1G0G4J1_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium RBG_16_51_14 TaxID=1798265 RepID=A0A1G0G4J1_9GAMM)

HSP 1 Score: 53.1 bits (126), Expect = 9.860e-7
Identity = 29/54 (53.70%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    4 MEKKSPTRPLLAALGTSFAVSLVATPMAYAEGNPFAAVEYQGGYMVAADEAKCG 165
            M K     P  AALG +FAVSL A+P+  A GNPF+  +Y+ GYMVA  E KCG
Sbjct:    1 MSKNRMLNPFAAALGATFAVSLAASPIVDAAGNPFSMTDYKSGYMVA--EGKCG 52
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BLAST of mRNA_P-wetherbeei_contig51718.1.1 vs. uniprot
Match: A0A6L8EP57_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8EP57_9GAMM)

HSP 1 Score: 52.4 bits (124), Expect = 2.210e-6
Identity = 34/63 (53.97%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:    4 MEKKSPTRPLLAALGTSFAVSLVATPMAYAEGNPFAAVEY-QGGYMVAADEAKCGASMGEGKC 189
            M K++  +PL AALGT+FAVSL  +P+A A  NPF+  E  QGGYMVA       A  GEGKC
Sbjct:    1 MSKETTLKPLAAALGTTFAVSLSLSPIASAADNPFSMTELSQGGYMVA------DAHGGEGKC 57
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BLAST of mRNA_P-wetherbeei_contig51718.1.1 vs. uniprot
Match: A0A1F3ZA52_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RBG_19FT_COMBO_58_11 TaxID=1797480 RepID=A0A1F3ZA52_9PROT)

HSP 1 Score: 50.4 bits (119), Expect = 1.170e-5
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   40 ALGTSFAVSLVATPMAYAEGNPFAAVEYQGGYMVAA-DEAKCGASMGEGKCGG 195
            ALG++FAV+LVA P+A A  NPF     + GY++AA DEAK  A   EGKCGG
Sbjct:   11 ALGSAFAVTLVAAPLATATENPFGMSALKSGYLLAAADEAKPAAKPMEGKCGG 63
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51718.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6N0HYZ4_9GAMM5.450e-956.45Low-complexity protein n=2 Tax=Gammaproteobacteria... [more]
A0A1G0K9G2_9GAMM1.820e-754.10Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A1G0G4J1_9GAMM9.860e-753.70Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A6L8EP57_9GAMM2.210e-653.97Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A1F3ZA52_9PROT1.170e-556.60Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51718contigP-wetherbeei_contig51718:183..503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog207954.MED92_16415
Model size321
Max annot lvl135619|Oceanospirillales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.35e-07
EggNOG OGsCOG3767@1|root,COG3767@2|Bacteria,1N9HK@1224|Proteobacteria,1SD4Q@1236|Gammaproteobacteria,1XKZ5@135619|Oceanospirillales
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186776.3135502-CDS-P-wetherbeei_contig51718:182..5001683186776.3135502-CDS-P-wetherbeei_contig51718:182..500Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51718 183..500 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186776.3241975-UTR-P-wetherbeei_contig51718:500..5031683186776.3241975-UTR-P-wetherbeei_contig51718:500..503Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig51718 501..503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51718.1.1prot_P-wetherbeei_contig51718.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51718 183..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51718.1.1

>prot_P-wetherbeei_contig51718.1.1 ID=prot_P-wetherbeei_contig51718.1.1|Name=mRNA_P-wetherbeei_contig51718.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
MEKKSPTRPLLAALGTSFAVSLVATPMAYAEGNPFAAVEYQGGYMVAADE
AKCGASMGEGKCGGAASDAKAESPAPAKEADAKAGEGKCGGASGDAKAHE
GKCGS*
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mRNA from alignment at P-wetherbeei_contig51718:183..503-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51718.1.1 ID=mRNA_P-wetherbeei_contig51718.1.1|Name=mRNA_P-wetherbeei_contig51718.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig51718:183..503- (Phaeothamnion wetherbeei SAG_119_79)
AGCATGGAAAAGAAATCCCCCACGCGTCCGCTGCTTGCAGCACTTGGTAC
GAGCTTCGCGGTGAGCCTGGTTGCCACCCCCATGGCCTACGCCGAGGGCA
ATCCTTTCGCCGCAGTTGAATATCAGGGCGGCTACATGGTGGCGGCAGAC
GAAGCCAAGTGTGGCGCGAGCATGGGCGAGGGCAAGTGTGGCGGTGCGGC
TAGCGATGCCAAGGCCGAATCTCCGGCCCCGGCCAAGGAAGCCGATGCCA
AGGCCGGTGAAGGCAAGTGTGGCGGTGCCAGCGGCGACGCCAAGGCTCAC
GAAGGCAAGTGCGGTAGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51718:183..503-

>mRNA_P-wetherbeei_contig51718.1.1 ID=mRNA_P-wetherbeei_contig51718.1.1|Name=mRNA_P-wetherbeei_contig51718.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig51718:183..503- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAAAGAAATCCCCCACGCGTCCGCTGCTTGCAGCACTTGGTACGAG
CTTCGCGGTGAGCCTGGTTGCCACCCCCATGGCCTACGCCGAGGGCAATC
CTTTCGCCGCAGTTGAATATCAGGGCGGCTACATGGTGGCGGCAGACGAA
GCCAAGTGTGGCGCGAGCATGGGCGAGGGCAAGTGTGGCGGTGCGGCTAG
CGATGCCAAGGCCGAATCTCCGGCCCCGGCCAAGGAAGCCGATGCCAAGG
CCGGTGAAGGCAAGTGTGGCGGTGCCAGCGGCGACGCCAAGGCTCACGAA
GGCAAGTGCGGTAGCTGA
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