mRNA_P-wetherbeei_contig5170.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5170.1.1
Unique NamemRNA_P-wetherbeei_contig5170.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5170.1.1 vs. uniprot
Match: A0A7S0DWR2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0DWR2_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 1.060e-7
Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 1
Query:   34 LAVVLYLSVSWAAYTAFGPEVSADVLS------DYPDSALFGLV-KVSVCVVAAACYPLQAHPGRESLMSLL 228
            LA+ LYL      Y  FG  V++DVL+       YP+SA   +V ++++ VV   CYPLQ HPGR  L+SLL
Sbjct:  294 LALGLYLCAGGGGYYTFGSRVASDVLAGEDGKLSYPESAALVIVGRIAIAVVVTMCYPLQVHPGRGCLVSLL 365          
BLAST of mRNA_P-wetherbeei_contig5170.1.1 vs. uniprot
Match: A0A0M0JEA8_9EUKA (Amino acid transporter n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JEA8_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 1.980e-7
Identity = 25/65 (38.46%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   34 LAVVLYLSVSWAAYTAFGPEVSADVLSDYPDSALFGLVKVSVCVVAAACYPLQAHPGRESLMSLL 228
            LA  +Y+ +  A Y  FG  V+ +VL  YP+S +  + ++++ +V  ACYPLQAHP R+ L +++
Sbjct:  280 LAFCVYMVLGSAGYYTFGNLVTKNVLVSYPESYVVAVARIAISLVVTACYPLQAHPARKCLTTIV 344          
BLAST of mRNA_P-wetherbeei_contig5170.1.1 vs. uniprot
Match: A0A7S2WEX7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEX7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.680e-7
Identity = 26/76 (34.21%), Postives = 46/76 (60.53%), Query Frame = 1
Query:    1 RLTRVTNATVLLAVVLYLSVSWAAYTAFGPEVSADVLSDYPDSALFGLVKVSVCVVAAACYPLQAHPGRESLMSLL 228
            R+ RV  +++++A  +YL+V WA Y  FG  V +DVL ++  S +    ++ V ++    YPLQ HP R  ++S++
Sbjct:  226 RVDRVIVSSIVVAFFVYLAVGWAGYMTFGDNVESDVLVNFGGSPVVSAARLFVALLVCFSYPLQCHPSRACIISII 301          
BLAST of mRNA_P-wetherbeei_contig5170.1.1 vs. uniprot
Match: A0A507ECU8_9FUNG (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507ECU8_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 2.790e-7
Identity = 27/73 (36.99%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   10 RVTNATVLLAVVLYLSVSWAAYTAFGPEVSADVLSDYPDSALFGLVKVSVCVVAAACYPLQAHPGRESLMSLL 228
            R+T+  + +  V+YL+V WA Y  FG +    ++++Y   A   L ++S  +++A  YP+Q HP R SL SLL
Sbjct:  313 RITDIAISVCFVIYLAVGWAGYLTFGNQADVMIINNYTPIAATTLARLSFVLLSAFSYPIQLHPCRSSLDSLL 385          
BLAST of mRNA_P-wetherbeei_contig5170.1.1 vs. uniprot
Match: A0A8J2WTB1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WTB1_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.410e-6
Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 1
Query:    1 RLTRVTNATVLLAVVLYLSVSWAAYTAFGPEVSADVLSDYPDSALFGLVKVSVCVVAAACYPLQAHPGRESLMSLL 228
            RL  V    V LA+  YL ++ A Y  FG  + +DVL++Y  +    L +V+V +   +  PLQ HP RE + SLL
Sbjct:  228 RLDLVVVGAVSLALAFYLIIANAGYATFGASIHSDVLTNYAAAPAIALARVAVALEVTSAIPLQLHPSRECIKSLL 303          
BLAST of mRNA_P-wetherbeei_contig5170.1.1 vs. uniprot
Match: A0A6B2L6L4_9EUKA (Aa_trans domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L6L4_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 4.470e-6
Identity = 23/67 (34.33%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   28 VLLAVVLYLSVSWAAYTAFGPEVSADVLSDYPDSALFGLVKVSVCVVAAACYPLQAHPGRESLMSLL 228
            VL+A+ +Y+ + +  Y  +G  + ++++S+ P      + +++V ++ A  YPLQ HP R SLMSLL
Sbjct:  218 VLIALCIYVLIGYCGYFTYGRHIKSNIISNLPQDVPTTICRIAVSLLVAFSYPLQIHPCRNSLMSLL 284          
BLAST of mRNA_P-wetherbeei_contig5170.1.1 vs. uniprot
Match: A0A7S2CDP6_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CDP6_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 8.440e-6
Identity = 24/66 (36.36%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   34 LAVVLYLSVSWAAYTAFGPEVSADVLSDYPDSA-LFGLVKVSVCVVAAACYPLQAHPGRESLMSLL 228
            +A+ +Y+ +  A Y  FG  V+ D+L  YP S+ +    ++++ +V   CYPLQAHP R +L +L+
Sbjct:  258 IALCVYIVLGTAGYLTFGSLVAKDILVSYPTSSYVVSFARLAISLVVTTCYPLQAHPTRAALSTLV 323          
BLAST of mRNA_P-wetherbeei_contig5170.1.1 vs. uniprot
Match: F0XYI5_AURAN (Uncharacterized protein AOT5 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYI5_AURAN)

HSP 1 Score: 51.6 bits (122), Expect = 8.440e-6
Identity = 24/61 (39.34%), Postives = 34/61 (55.74%), Query Frame = 1
Query:   46 LYLSVSWAAYTAFGPEVSADVLSDYPDSALFGLVKVSVCVVAAACYPLQAHPGRESLMSLL 228
            +YL V+   Y  FG +V  D+L +YP      + +V V  + A  +PLQ HP R  +MSLL
Sbjct:  263 IYLLVAVCGYMTFGDKVQGDILDNYPVEPAITVARVFVAALVALSFPLQCHPSRACVMSLL 323          
BLAST of mRNA_P-wetherbeei_contig5170.1.1 vs. uniprot
Match: A0A1E4T800_9ASCO (Aa_trans domain-containing protein n=1 Tax=[Candida] arabinofermentans NRRL YB-2248 TaxID=983967 RepID=A0A1E4T800_9ASCO)

HSP 1 Score: 49.7 bits (117), Expect = 4.070e-5
Identity = 23/60 (38.33%), Postives = 36/60 (60.00%), Query Frame = 1
Query:   37 AVVLYLSVSWAAYTAFGPEVSADVLSDYPDSALFGLVKVSVCVVAAACYPLQAHPGRESL 216
            A VLY++V    Y  FG  V  +++  YPDS    + ++S+ ++ A  YPLQA+P R S+
Sbjct:  254 AFVLYMTVGLTGYLTFGDNVVGNIIVMYPDSITSTIGRMSIVILVALSYPLQANPARASI 313          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5170.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7S0DWR2_9EUKA1.060e-744.44Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A0M0JEA8_9EUKA1.980e-738.46Amino acid transporter n=1 Tax=Chrysochromulina to... [more]
A0A7S2WEX7_9STRA2.680e-734.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A507ECU8_9FUNG2.790e-736.99Cyclic nucleotide-binding domain-containing protei... [more]
A0A8J2WTB1_9STRA2.410e-638.16Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6B2L6L4_9EUKA4.470e-634.33Aa_trans domain-containing protein n=1 Tax=Arcella... [more]
A0A7S2CDP6_9EUKA8.440e-636.36Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
F0XYI5_AURAN8.440e-639.34Uncharacterized protein AOT5 n=1 Tax=Aureococcus a... [more]
A0A1E4T800_9ASCO4.070e-538.33Aa_trans domain-containing protein n=1 Tax=[Candid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5170contigP-wetherbeei_contig5170:3471..3698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G1F5
Preferred nameAVT7
PFAMsAa_trans
Model size228
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003333,GO:0003674,GO:0005215,GO:0005290,GO:0005302,GO:0005310,GO:0005313,GO:0005326,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006835,GO:0006836,GO:0006855,GO:0006865,GO:0006950,GO:0006995,GO:0007034,GO:0007154,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0015075,GO:0015171,GO:0015172,GO:0015173,GO:0015174,GO:0015175,GO:0015179,GO:0015181,GO:0015183,GO:0015189,GO:0015194,GO:0015238,GO:0015318,GO:0015556,GO:0015711,GO:0015740,GO:0015800,GO:0015801,GO:0015802,GO:0015804,GO:0015807,GO:0015809,GO:0015813,GO:0015817,GO:0015819,GO:0015825,GO:0015828,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0022857,GO:0022889,GO:0031090,GO:0031166,GO:0031224,GO:0031300,GO:0031301,GO:0031310,GO:0031667,GO:0031668,GO:0031669,GO:0032329,GO:0032974,GO:0032975,GO:0033554,GO:0034220,GO:0034486,GO:0034490,GO:0034491,GO:0042221,GO:0042493,GO:0042594,GO:0043090,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043562,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045117,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0051938,GO:0055085,GO:0061459,GO:0070778,GO:0071496,GO:0071627,GO:0071628,GO:0071702,GO:0071705,GO:0071944,GO:0089709,GO:0090454,GO:0090513,GO:0090514,GO:0090515,GO:0090516,GO:0090517,GO:0090518,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:0098852,GO:1901474,GO:1901481,GO:1901482,GO:1902022,GO:1902023,GO:1902024,GO:1902475,GO:1903400,GO:1903401,GO:1903825,GO:1903826,GO:1905039,GO:1990822
Exons1
Evalue1.2e-10
EggNOG OGsCOG0814@1|root,KOG1305@2759|Eukaryota
Descriptionamino acid transmembrane transporter activity
Cds size228
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186776.1535795-CDS-P-wetherbeei_contig5170:3470..36981683186776.1535795-CDS-P-wetherbeei_contig5170:3470..3698Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5170 3471..3698 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5170.1.1prot_P-wetherbeei_contig5170.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5170 3471..3698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5170.1.1

>prot_P-wetherbeei_contig5170.1.1 ID=prot_P-wetherbeei_contig5170.1.1|Name=mRNA_P-wetherbeei_contig5170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
RLTRVTNATVLLAVVLYLSVSWAAYTAFGPEVSADVLSDYPDSALFGLVK
VSVCVVAAACYPLQAHPGRESLMSLL
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mRNA from alignment at P-wetherbeei_contig5170:3471..3698-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5170.1.1 ID=mRNA_P-wetherbeei_contig5170.1.1|Name=mRNA_P-wetherbeei_contig5170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig5170:3471..3698- (Phaeothamnion wetherbeei SAG_119_79)
CGCCTGACGCGCGTCACCAACGCGACGGTCCTCCTCGCCGTCGTCCTCTA CCTGTCCGTCTCGTGGGCGGCCTACACGGCGTTCGGTCCGGAGGTGTCGG CAGACGTCCTGTCCGACTACCCCGACAGCGCCCTGTTCGGGCTGGTGAAA GTTTCCGTCTGCGTGGTCGCCGCCGCCTGCTACCCGCTTCAGGCGCATCC GGGGCGGGAATCCCTCATGAGTCTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5170:3471..3698-

>mRNA_P-wetherbeei_contig5170.1.1 ID=mRNA_P-wetherbeei_contig5170.1.1|Name=mRNA_P-wetherbeei_contig5170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig5170:3471..3698- (Phaeothamnion wetherbeei SAG_119_79)
CGCCTGACGCGCGTCACCAACGCGACGGTCCTCCTCGCCGTCGTCCTCTA
CCTGTCCGTCTCGTGGGCGGCCTACACGGCGTTCGGTCCGGAGGTGTCGG
CAGACGTCCTGTCCGACTACCCCGACAGCGCCCTGTTCGGGCTGGTGAAA
GTTTCCGTCTGCGTGGTCGCCGCCGCCTGCTACCCGCTTCAGGCGCATCC
GGGGCGGGAATCCCTCATGAGTCTGCTG
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