mRNA_P-wetherbeei_contig51682.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51682.1.1
Unique NamemRNA_P-wetherbeei_contig51682.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51682.1.1 vs. uniprot
Match: A0A0Q7TKM6_9HYPH (Uncharacterized protein n=2 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TKM6_9HYPH)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-9
Identity = 27/43 (62.79%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   10 KNVVATLRRDASFVWNVVIVVVFIMFVGLALTATVLDLMAIRH 138
            K+VV+ LRRDA+F+WN VIVVVF+ F GLA+ + +LDL++IRH
Sbjct:   21 KHVVSALRRDAAFIWNAVIVVVFVGFAGLAVASALLDLISIRH 63
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BLAST of mRNA_P-wetherbeei_contig51682.1.1 vs. uniprot
Match: UPI0010BECA86 (hypothetical protein n=1 Tax=Pseudolabrys sp. FHR47 TaxID=2562284 RepID=UPI0010BECA86)

HSP 1 Score: 53.1 bits (126), Expect = 3.810e-8
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 MNSKNVVATLRRDASFVWNVVIVVVFIMFVGLALTATVLDLMAIRH 138
            ++S   +  LRRDA+F+WNV+I  VF++FV LA+ + VLDL+AIRH
Sbjct:   23 ISSSGFIDALRRDAAFIWNVLISAVFVVFVALAVASAVLDLIAIRH 68
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BLAST of mRNA_P-wetherbeei_contig51682.1.1 vs. uniprot
Match: UPI00143D0A3B (hypothetical protein n=1 Tax=Pseudolabrys sp. GY_H TaxID=2292256 RepID=UPI00143D0A3B)

HSP 1 Score: 51.6 bits (122), Expect = 1.230e-7
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 MNSKNVVATLRRDASFVWNVVIVVVFIMFVGLALTATVLDLMAIRH 138
            M+S+ VV  LRRDA F+WNV+I  VF+ F  LA+ + ++DL++IRH
Sbjct:   13 MSSRTVVDALRRDAMFIWNVLISAVFVAFAALAVASALIDLISIRH 58
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51682.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0Q7TKM6_9HYPH1.010e-962.79Uncharacterized protein n=2 Tax=Pseudolabrys sp. R... [more]
UPI0010BECA863.810e-854.35hypothetical protein n=1 Tax=Pseudolabrys sp. FHR4... [more]
UPI00143D0A3B1.230e-752.17hypothetical protein n=1 Tax=Pseudolabrys sp. GY_H... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51682contigP-wetherbeei_contig51682:231..371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size141
Hectar predicted targeting categorysignal anchor
Exons1
Cds size141
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186775.9039903-CDS-P-wetherbeei_contig51682:230..3711683186775.9039903-CDS-P-wetherbeei_contig51682:230..371Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51682 231..371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51682.1.1prot_P-wetherbeei_contig51682.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51682 231..371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51682.1.1

>prot_P-wetherbeei_contig51682.1.1 ID=prot_P-wetherbeei_contig51682.1.1|Name=mRNA_P-wetherbeei_contig51682.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=47bp
MNSKNVVATLRRDASFVWNVVIVVVFIMFVGLALTATVLDLMAIRH*
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mRNA from alignment at P-wetherbeei_contig51682:231..371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51682.1.1 ID=mRNA_P-wetherbeei_contig51682.1.1|Name=mRNA_P-wetherbeei_contig51682.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig51682:231..371+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAATAGCAAGAATGTGGTCGCCACACTGCGCCGCGACGCCTCGTTTGT
CTGGAACGTGGTCATCGTGGTCGTGTTCATTATGTTTGTAGGCCTCGCTC
TGACGGCGACCGTGCTCGATCTCATGGCGATCCGTCATTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51682:231..371+

>mRNA_P-wetherbeei_contig51682.1.1 ID=mRNA_P-wetherbeei_contig51682.1.1|Name=mRNA_P-wetherbeei_contig51682.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig51682:231..371+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAATAGCAAGAATGTGGTCGCCACACTGCGCCGCGACGCCTCGTTTGT
CTGGAACGTGGTCATCGTGGTCGTGTTCATTATGTTTGTAGGCCTCGCTC
TGACGGCGACCGTGCTCGATCTCATGGCGATCCGTCATTAA
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