mRNA_P-wetherbeei_contig51654.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51654.1.1
Unique NamemRNA_P-wetherbeei_contig51654.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51654.1.1 vs. uniprot
Match: UPI0003480B91 (hypothetical protein n=1 Tax=Ideonella sp. B508-1 TaxID=137716 RepID=UPI0003480B91)

HSP 1 Score: 53.9 bits (128), Expect = 4.650e-7
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:  232 EQALPTIAQLLGAFDVSNWLKSALASAVNRDAVDAAQDAELLHLVLAARASALI 393
            E + PT  +LL +   S WLK AL SA+ RD VDAA+DAELL LVLA+RA +L+
Sbjct:   12 EASAPTADELLCSPSSSTWLKDALRSALTRDPVDAARDAELLALVLASRADSLL 65
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BLAST of mRNA_P-wetherbeei_contig51654.1.1 vs. uniprot
Match: A0A426V2V4_9BURK (Uncharacterized protein n=1 Tax=Aquabacterium soli TaxID=2493092 RepID=A0A426V2V4_9BURK)

HSP 1 Score: 51.2 bits (121), Expect = 3.960e-6
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:  238 ALPTIAQLLGAFDVSNWLKSALASAVNRDAVDAAQDAELLHLVLAARASALI 393
            A P++  +L A D S WLK AL +A++RD VDAA DAELL  VLA R ++L+
Sbjct:   12 AAPSVDAILAAPDASKWLKDALRAALDRDPVDAANDAELLAQVLADRCNSLL 63
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BLAST of mRNA_P-wetherbeei_contig51654.1.1 vs. uniprot
Match: A0A024ELP8_9PSED (Uncharacterized protein n=4 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A024ELP8_9PSED)

HSP 1 Score: 51.2 bits (121), Expect = 4.340e-5
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:  250 IAQLLGAFDVSNWLKSALASAVNRDAVDAAQDAELLHLVLAARASALIDG 399
            +AQL+G+  VS+WLKSAL SA++RD VDAA DAE+L  +L  R ++L+ G
Sbjct:  151 LAQLIGSPVVSDWLKSALKSALDRDCVDAANDAEILADLLGRRCNSLLMG 200
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BLAST of mRNA_P-wetherbeei_contig51654.1.1 vs. uniprot
Match: UPI00130DEC7A (hypothetical protein n=2 Tax=Pseudomonas fluorescens group TaxID=136843 RepID=UPI00130DEC7A)

HSP 1 Score: 47.4 bits (111), Expect = 9.830e-5
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:  250 IAQLLGAFDVSNWLKSALASAVNRDAVDAAQDAELLHLVLAARASALIDG 399
            +AQL+ +  VS+WLKSAL SA++RD VDAA DAE+L  +L  R ++L+ G
Sbjct:    1 MAQLIESPAVSDWLKSALKSALDRDCVDAANDAEILADLLNRRCNSLLMG 50
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51654.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI0003480B914.650e-757.41hypothetical protein n=1 Tax=Ideonella sp. B508-1 ... [more]
A0A426V2V4_9BURK3.960e-653.85Uncharacterized protein n=1 Tax=Aquabacterium soli... [more]
A0A024ELP8_9PSED4.340e-556.00Uncharacterized protein n=4 Tax=Pseudomonadaceae T... [more]
UPI00130DEC7A9.830e-554.00hypothetical protein n=2 Tax=Pseudomonas fluoresce... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51654contigP-wetherbeei_contig51654:104..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size399
Hectar predicted targeting categoryother localisation
Exons1
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186775.5581994-CDS-P-wetherbeei_contig51654:103..5021683186775.5581994-CDS-P-wetherbeei_contig51654:103..502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51654 104..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51654.1.1prot_P-wetherbeei_contig51654.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51654 104..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51654.1.1

>prot_P-wetherbeei_contig51654.1.1 ID=prot_P-wetherbeei_contig51654.1.1|Name=mRNA_P-wetherbeei_contig51654.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
MNTLERTIVAAAHRELMRLRAPISTAEDHQDALTAFRSLSTLSSLAHIEG
GGLGITARAELLAVENEAAKSLKSLKREQALPTIAQLLGAFDVSNWLKSA
LASAVNRDAVDAAQDAELLHLVLAARASALIDG
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mRNA from alignment at P-wetherbeei_contig51654:104..502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51654.1.1 ID=mRNA_P-wetherbeei_contig51654.1.1|Name=mRNA_P-wetherbeei_contig51654.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig51654:104..502- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACACACTCGAAAGAACGATCGTCGCGGCCGCGCACAGAGAATTGAT
GCGCCTGCGCGCGCCGATCTCCACGGCCGAGGACCACCAGGATGCCCTCA
CGGCCTTCAGATCCTTGAGCACACTATCCAGCCTGGCGCACATCGAAGGC
GGCGGGCTGGGCATCACTGCCAGAGCTGAACTGCTCGCCGTGGAAAATGA
GGCGGCCAAGTCCCTCAAGAGCCTTAAGCGAGAACAGGCGCTTCCAACCA
TTGCCCAGCTGCTCGGGGCCTTTGATGTATCAAACTGGCTGAAGTCCGCC
TTGGCATCCGCAGTCAACCGGGACGCAGTTGATGCAGCACAAGACGCAGA
GTTGCTGCACCTGGTTCTGGCCGCTCGCGCAAGCGCTTTGATCGATGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51654:104..502-

>mRNA_P-wetherbeei_contig51654.1.1 ID=mRNA_P-wetherbeei_contig51654.1.1|Name=mRNA_P-wetherbeei_contig51654.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig51654:104..502- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACACACTCGAAAGAACGATCGTCGCGGCCGCGCACAGAGAATTGAT
GCGCCTGCGCGCGCCGATCTCCACGGCCGAGGACCACCAGGATGCCCTCA
CGGCCTTCAGATCCTTGAGCACACTATCCAGCCTGGCGCACATCGAAGGC
GGCGGGCTGGGCATCACTGCCAGAGCTGAACTGCTCGCCGTGGAAAATGA
GGCGGCCAAGTCCCTCAAGAGCCTTAAGCGAGAACAGGCGCTTCCAACCA
TTGCCCAGCTGCTCGGGGCCTTTGATGTATCAAACTGGCTGAAGTCCGCC
TTGGCATCCGCAGTCAACCGGGACGCAGTTGATGCAGCACAAGACGCAGA
GTTGCTGCACCTGGTTCTGGCCGCTCGCGCAAGCGCTTTGATCGATGGA
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