mRNA_P-wetherbeei_contig51638.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51638.1.1
Unique NamemRNA_P-wetherbeei_contig51638.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51638.1.1 vs. uniprot
Match: A0A2W2BQF7_9HYPH (SLC13 family permease n=2 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2BQF7_9HYPH)

HSP 1 Score: 238 bits (608), Expect = 5.810e-72
Identity = 124/185 (67.03%), Postives = 152/185 (82.16%), Query Frame = 1
Query:    1 VLLPNSPLIGESLRSLKFKERYGLQVLALHRAG-RVARSISSARLRMGDVLLLQGKPDDVKALERGNLFNIFGGVEAERYNRSRAPLASAIFMLAILAATFKFASLPVAVLGGAFLMLLTRCLSPEEAYRQVEWKILILIGALLSLGAAMETSGAGQFLAQKLIGLVGADSRYALLTCFFVLTVA 552
            VL+P+SPLIG +L+S +F ERYGL+VL L+RAG R+ R +S  R+R+GDVLLLQG+P+DV+ LERGNLFNIFGGV+ ER   S A LA  IF LA+ A TF   S+PVA LGGAFLMLLTRC+SPE+AYR+VEWK+LILIGALLSLGAAM+ +G G++LA +LI LVG +S   LL+CFFVLTVA
Sbjct:  395 VLMPDSPLIGHTLKSAEFHERYGLKVLGLNRAGFRMPRRLSRIRMRLGDVLLLQGRPEDVRELERGNLFNIFGGVDTERLRTSHAALAVLIFALALAAITFDLVSMPVAALGGAFLMLLTRCISPEDAYRRVEWKVLILIGALLSLGAAMDATGTGRYLADRLIALVGGESPLLLLSCFFVLTVA 579          
BLAST of mRNA_P-wetherbeei_contig51638.1.1 vs. uniprot
Match: A0A7Y4T9R9_9PROT (TRAP transporter large permease subunit n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y4T9R9_9PROT)

HSP 1 Score: 221 bits (563), Expect = 1.670e-69
Identity = 114/184 (61.96%), Postives = 149/184 (80.98%), Query Frame = 1
Query:    4 LLPNSPLIGESLRSLKFKERYGLQVLALHRAGR-VARSISSARLRMGDVLLLQGKPDDVKALERGNLFNIFGGVEAERYNRSRAPLASAIFMLAILAATFKFASLPVAVLGGAFLMLLTRCLSPEEAYRQVEWKILILIGALLSLGAAMETSGAGQFLAQKLIGLVGADSRYALLTCFFVLTVA 552
            LLP + LIG +L S +FK RYGL VLA++R G+ +++ +S   LR+GDVLLLQG P++VKALE+GNLF+IFGGV+  R N  RAP+A+AIF LA+ AATFK A L +AVL GAFLM+++RC+SPE+AYRQV+WK+LILIGAL SLG AM+TSG G++LAQ+LI + G    + +LTCFFVLT+A
Sbjct:    2 LLPGARLIGATLSSAEFKNRYGLLVLAINRGGKPISQKLSRLSLRLGDVLLLQGTPENVKALEQGNLFSIFGGVDYTRLNVERAPVAAAIFALALAAATFKLAPLAIAVLAGAFLMMVSRCISPEDAYRQVDWKVLILIGALFSLGTAMDTSGTGRYLAQQLIAVAGDQPPWVVLTCFFVLTLA 185          
BLAST of mRNA_P-wetherbeei_contig51638.1.1 vs. uniprot
Match: UPI0019BE95E7 (SLC13 family permease n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI0019BE95E7)

HSP 1 Score: 222 bits (565), Expect = 2.930e-66
Identity = 116/185 (62.70%), Postives = 147/185 (79.46%), Query Frame = 1
Query:    1 VLLPNSPLIGESLRSLKFKERYGLQVLALHRAG-RVARSISSARLRMGDVLLLQGKPDDVKALERGNLFNIFGGVEAERYNRSRAPLASAIFMLAILAATFKFASLPVAVLGGAFLMLLTRCLSPEEAYRQVEWKILILIGALLSLGAAMETSGAGQFLAQKLIGLVGADSRYALLTCFFVLTVA 552
            VL+P+SPLIG+S+R  +F +RYGLQVL L+RAG  V + +S  R+R+GDVLLLQG  ++VKALERGNLF+IFGGV+  R   S A  A AIF  A++AATF    LPVA +GGAFLML+TRC+SPEEAYR++EWK+L+LIGALLSLGAAME +G G++LA +LI ++G  +   LLT FFVLTVA
Sbjct:  318 VLMPDSPLIGKSIRGAEFHDRYGLQVLGLNRAGYTVKQKLSRMRMRLGDVLLLQGSAENVKALERGNLFSIFGGVDTARLKTSHAAAAIAIFAAALIAATFNIVPLPVAAIGGAFLMLVTRCISPEEAYRRMEWKVLVLIGALLSLGAAMEATGTGKYLAAQLIAVIGDQNPLLLLTSFFVLTVA 502          
BLAST of mRNA_P-wetherbeei_contig51638.1.1 vs. uniprot
Match: A0A7V8ZRN5_9BURK (SLC13 family permease n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7V8ZRN5_9BURK)

HSP 1 Score: 206 bits (524), Expect = 4.220e-60
Identity = 106/185 (57.30%), Postives = 139/185 (75.14%), Query Frame = 1
Query:    1 VLLPNSPLIGESLRSLKFKERYGLQVLALHRAGRVARS-ISSARLRMGDVLLLQGKPDDVKALERGNLFNIFGGVEAERYNRSRAPLASAIFMLAILAATFKFASLPVAVLGGAFLMLLTRCLSPEEAYRQVEWKILILIGALLSLGAAMETSGAGQFLAQKLIGLVGADSRYALLTCFFVLTVA 552
            VLLP+SPL+G +LR + F ERYGLQVL ++RAG   +S +    L+MGDVLLLQGK ++VK +ERGNL NIFGG++  R N  RAPLA  IF+ A+ AATF   +LPVAVL GA L+++T C+ P+EAYR+VEWK +ILIG+LL+LG A+E +G G FLA ++I L+G      L +CFF+LTVA
Sbjct:  334 VLLPSSPLLGRTLRHIDFNERYGLQVLGMNRAGSTMQSSLDRIHLKMGDVLLLQGKAENVKRMERGNLVNIFGGIDQARLNYKRAPLAILIFVGALAAATFNLVALPVAVLSGALLVMVTGCIDPDEAYRRVEWKAIILIGSLLALGVALEETGTGAFLAAQIIALLGESDPLVLFSCFFILTVA 518          
BLAST of mRNA_P-wetherbeei_contig51638.1.1 vs. uniprot
Match: A0A3N5RKP3_9CHLR (SLC13 family permease n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5RKP3_9CHLR)

HSP 1 Score: 186 bits (473), Expect = 9.380e-53
Identity = 101/184 (54.89%), Postives = 130/184 (70.65%), Query Frame = 1
Query:    1 VLLPNSPLIGESLRSLKFKERYGLQVLALHRAGR-VARSISSARLRMGDVLLLQGKPDDVKALERGNLFNIFGGVEAERYNRSRAPLASAIFMLAILAATFKFASLPVAVLGGAFLMLLTRCLSPEEAYRQVEWKILILIGALLSLGAAMETSGAGQFLAQKLIGLVGADSRYALLTCFFVLTV 549
            +LLP SPLIG +L+ ++F+ERYGLQVLA++R    + R ISS  LRMGDVLL+QG    +  L+   +F + G +E +R N  RAPLA AIF   +L ATF   SL VAVL GA L  LTRC++PEEAYR VEWK LILIG++L LG AM+ +G   FLA +++ LVG+ + Y LL+ FFVLTV
Sbjct:  326 ILLPRSPLIGRTLKGVQFRERYGLQVLAVNRGDETIRRKISSVPLRMGDVLLVQGPVSRINILQEDKIFEVMGVIEDKRPNVRRAPLAIAIFAGVLLLATFNVISLAVAVLLGALLSFLTRCITPEEAYRDVEWKALILIGSMLGLGTAMQVTGTADFLASQIVSLVGSTNPYILLSAFFVLTV 509          
BLAST of mRNA_P-wetherbeei_contig51638.1.1 vs. uniprot
Match: UPI0019BD9732 (Anion permease n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=UPI0019BD9732)

HSP 1 Score: 179 bits (455), Expect = 3.490e-50
Identity = 92/184 (50.00%), Postives = 133/184 (72.28%), Query Frame = 1
Query:    1 VLLPNSPLIGESLRSLKFKERYGLQVLALHRAGR-VARSISSARLRMGDVLLLQGKPDDVKALERGNLFNIFGGVEAERYNRSRAPLASAIFMLAILAATFKFASLPVAVLGGAFLMLLTRCLSPEEAYRQVEWKILILIGALLSLGAAMETSGAGQFLAQKLIGLVGADSRYALLTCFFVLTV 549
            ++LP SPLIG +LR  + +ER+G+QVLA++R+G  + R +S   L++GDVLLLQG+P+++ +LE  N+F + G +  ER N  RAP+A AIF   +L  +     +PVAVL GA L+ LTRC++PEEAYR+VEWK LILIG++L+LGAAM+ +G  +FLA  ++  VG    + +LT FF+LTV
Sbjct:  318 LILPGSPLIGRTLRGFQLRERFGVQVLAINRSGESLRRKLSEVSLKLGDVLLLQGQPEELSSLEGSNIFRVLGKIRNERPNWGRAPIAIAIFGGVLLVGSVGLMPMPVAVLLGALLVFLTRCITPEEAYREVEWKALILIGSMLALGAAMQNTGTAEFLADVIVDTVGQAEPFWILTGFFILTV 501          
BLAST of mRNA_P-wetherbeei_contig51638.1.1 vs. uniprot
Match: A0A2N2PCM3_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium HGW-Chloroflexi-10 TaxID=2013724 RepID=A0A2N2PCM3_9CHLR)

HSP 1 Score: 180 bits (456), Expect = 9.440e-50
Identity = 96/184 (52.17%), Postives = 135/184 (73.37%), Query Frame = 1
Query:    1 VLLPNSPLIGESLRSLKFKERYGLQVLALHR-AGRVARSISSARLRMGDVLLLQGKPDDVKALERGNLFNIFGGVEAERYNRSRAPLASAIFMLAILAATFKFASLPVAVLGGAFLMLLTRCLSPEEAYRQVEWKILILIGALLSLGAAMETSGAGQFLAQKLIGLVGADSRYALLTCFFVLTV 549
            VLLP SP IG + + L+ +ERY +QVLA++R  G V   I++ RL+MGDVLL+QG    +  L+  N F++ G V+A+R+NR RA + S IF+ A+L  T K  SLPVA+L GA L+ +TRC++P++AYRQVEWK+LILIG++L+LGAAM+++G   FLA++L  LVG+ +   LLT FF LTV
Sbjct:  428 VLLPRSPFIGRTPKGLQMRERYQIQVLAINRRTGTVHSKIAATRLQMGDVLLVQGNTQQIANLQAENTFDVLGLVDAQRFNRRRAWIVSGIFLGALLLGTLKLVSLPVAMLLGALLIFITRCITPDDAYRQVEWKVLILIGSMLALGAAMQSTGTAAFLAEQLTALVGSWNPLWLLTGFFALTV 611          
BLAST of mRNA_P-wetherbeei_contig51638.1.1 vs. uniprot
Match: A0A363U9R9_9CHLR (SLC13 family permease n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A363U9R9_9CHLR)

HSP 1 Score: 177 bits (448), Expect = 4.480e-49
Identity = 96/184 (52.17%), Postives = 132/184 (71.74%), Query Frame = 1
Query:    1 VLLPNSPLIGESLRSLKFKERYGLQVLALHRAGRVARS-ISSARLRMGDVLLLQGKPDDVKALERGNLFNIFGGVEAERYNRSRAPLASAIFMLAILAATFKFASLPVAVLGGAFLMLLTRCLSPEEAYRQVEWKILILIGALLSLGAAMETSGAGQFLAQKLIGLVGADSRYALLTCFFVLTV 549
            VLLP SP IG + +SLK +ER+ +QVLA++R   V RS I+  RL++GDVLL+QGK   + AL+  + F++ G +EA+R+NR +A     IFM   L A+FK   LP A+L GAFL+ +TRC++P+EAYRQV+WKILILIG++L LG AM+T+G  +FLA +L   VG  +   LLT FF+LTV
Sbjct:  336 VLLPRSPFIGRTPKSLKMRERFQIQVLAINRRTGVVRSKIADTRLQLGDVLLVQGKQKQIAALQSESAFDVLGVMEAQRFNRQQALTVMGIFMGTFLLASFKIIPLPAAMLLGAFLVFVTRCITPDEAYRQVDWKILILIGSMLGLGVAMQTTGTAEFLADRLTTFVGTLNPLWLLTGFFMLTV 519          
BLAST of mRNA_P-wetherbeei_contig51638.1.1 vs. uniprot
Match: A0A7C3JD71_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3JD71_9CHLR)

HSP 1 Score: 174 bits (442), Expect = 2.530e-48
Identity = 96/184 (52.17%), Postives = 129/184 (70.11%), Query Frame = 1
Query:    1 VLLPNSPLIGESLRSLKFKERYGLQVLALHRAGRVARS-ISSARLRMGDVLLLQGKPDDVKALERGNLFNIFGGVEAERYNRSRAPLASAIFMLAILAATFKFASLPVAVLGGAFLMLLTRCLSPEEAYRQVEWKILILIGALLSLGAAMETSGAGQFLAQKLIGLVGADSRYALLTCFFVLTV 549
            VLLP+S  IG +LR L+ +E+Y +QVLA+ R G V RS I+  RL MGDVLL+QG+ + + AL+  N F++ G VE+ R NR RA +   IF   +  ATFK   LP A+L GA L+ LTRC++PEEAYRQVEWK+LILIG +L+LG AM+ +G  +FLA++L   VG  +   LL+ FF+LTV
Sbjct:  316 VLLPHSIFIGRTLRGLQMREKYQIQVLAISRRGEVVRSKIAHTRLSMGDVLLVQGRQEQIAALQAENAFDVLGVVESRRINRQRAWVVVGIFAGILTLATFKLVPLPAAMLLGALLVFLTRCITPEEAYRQVEWKVLILIGCMLALGEAMQATGTAKFLAERLAAWVGEWNPLWLLSGFFILTV 499          
BLAST of mRNA_P-wetherbeei_contig51638.1.1 vs. uniprot
Match: A0A661QEG3_9DELT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A661QEG3_9DELT)

HSP 1 Score: 174 bits (442), Expect = 2.640e-48
Identity = 97/184 (52.72%), Postives = 128/184 (69.57%), Query Frame = 1
Query:    1 VLLPNSPLIGESLRSLKFKERYGLQVLALHRAG-RVARSISSARLRMGDVLLLQGKPDDVKALERGNLFNIFGGVEAERYNRSRAPLASAIFMLAILAATFKFASLPVAVLGGAFLMLLTRCLSPEEAYRQVEWKILILIGALLSLGAAMETSGAGQFLAQKLIGLVGADSRYALLTCFFVLTV 549
            +LLP SPLI  +L+SL+F+E+YGLQVLA++R G R+ R +S  RLR GDVL++QG    + ALE+ N F I   V     +R RAPLA  I+  A+ AATF   SLPVA+L GA L+ +TRC++PEEAY Q+ W +LILI ++L LGAAME +G  +FLA +++ LVG      LLT FF LTV
Sbjct:  316 ILLPGSPLIRRTLKSLRFREKYGLQVLAINRHGERLRRKMSRIRLRTGDVLVVQGDRARIAALEKQNTFRILSSVAGGIPHRERAPLAITIYAGALTAATFNLVSLPVAMLLGALLVFVTRCITPEEAYSQINWSVLILIASMLGLGAAMEATGTAEFLAGQIVQLVGHSRPVWLLTGFFALTV 499          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51638.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2W2BQF7_9HYPH5.810e-7267.03SLC13 family permease n=2 Tax=Aestuariivirga litor... [more]
A0A7Y4T9R9_9PROT1.670e-6961.96TRAP transporter large permease subunit n=1 Tax=Al... [more]
UPI0019BE95E72.930e-6662.70SLC13 family permease n=1 Tax=Hyphomicrobiales bac... [more]
A0A7V8ZRN5_9BURK4.220e-6057.30SLC13 family permease n=1 Tax=Burkholderiales bact... [more]
A0A3N5RKP3_9CHLR9.380e-5354.89SLC13 family permease n=1 Tax=Chloroflexi bacteriu... [more]
UPI0019BD97323.490e-5050.00Anion permease n=1 Tax=Chitinophagaceae bacterium ... [more]
A0A2N2PCM3_9CHLR9.440e-5052.17Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A363U9R9_9CHLR4.480e-4952.17SLC13 family permease n=1 Tax=Anaerolineales bacte... [more]
A0A7C3JD71_9CHLR2.530e-4852.17Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A661QEG3_9DELT2.640e-4852.72Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51638contigP-wetherbeei_contig51638:1..552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1396418.BATQ01000136_gene3703
PFAMsCitMHS,TrkA_C
Model size552
Max annot lvl203494|Verrucomicrobiae
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.8e-39
EggNOG OGsCOG0471@1|root,COG0471@2|Bacteria,46TTA@74201|Verrucomicrobia,2IU1V@203494|Verrucomicrobiae
DescriptionCitrate transporter
Cds size552
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186775.4468627-CDS-P-wetherbeei_contig51638:0..5521683186775.4468627-CDS-P-wetherbeei_contig51638:0..552Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51638 1..552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51638.1.1prot_P-wetherbeei_contig51638.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51638 1..552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51638.1.1

>prot_P-wetherbeei_contig51638.1.1 ID=prot_P-wetherbeei_contig51638.1.1|Name=mRNA_P-wetherbeei_contig51638.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
VLLPNSPLIGESLRSLKFKERYGLQVLALHRAGRVARSISSARLRMGDVL
LLQGKPDDVKALERGNLFNIFGGVEAERYNRSRAPLASAIFMLAILAATF
KFASLPVAVLGGAFLMLLTRCLSPEEAYRQVEWKILILIGALLSLGAAME
TSGAGQFLAQKLIGLVGADSRYALLTCFFVLTVA
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mRNA from alignment at P-wetherbeei_contig51638:1..552+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51638.1.1 ID=mRNA_P-wetherbeei_contig51638.1.1|Name=mRNA_P-wetherbeei_contig51638.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig51638:1..552+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCTGCTGCCCAACTCGCCGTTGATCGGCGAAAGCCTCAGGAGCCTCAA ATTCAAGGAACGGTACGGCCTGCAGGTGCTGGCCCTGCACCGGGCTGGCC GGGTTGCGAGATCGATCAGCTCCGCGCGCTTGCGGATGGGCGACGTGCTG CTGCTTCAGGGTAAGCCGGACGATGTGAAGGCTCTAGAGCGCGGCAACCT GTTCAATATCTTTGGAGGCGTTGAGGCCGAGCGTTACAACCGCTCCCGTG CGCCGCTGGCGTCTGCCATTTTCATGCTGGCGATCCTTGCCGCGACATTC AAGTTCGCATCGCTGCCGGTTGCCGTACTTGGCGGGGCCTTCCTCATGCT GCTGACGCGGTGCCTGTCGCCAGAGGAAGCCTATCGGCAGGTCGAGTGGA AAATCCTGATCCTGATCGGAGCGCTGCTCTCGTTAGGCGCTGCGATGGAG ACGAGCGGAGCGGGCCAATTCCTCGCACAAAAGCTCATTGGTTTGGTTGG CGCGGATAGCCGTTACGCCTTACTTACCTGTTTTTTCGTGCTCACGGTGG CA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51638:1..552+

>mRNA_P-wetherbeei_contig51638.1.1 ID=mRNA_P-wetherbeei_contig51638.1.1|Name=mRNA_P-wetherbeei_contig51638.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig51638:1..552+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCTGCTGCCCAACTCGCCGTTGATCGGCGAAAGCCTCAGGAGCCTCAA
ATTCAAGGAACGGTACGGCCTGCAGGTGCTGGCCCTGCACCGGGCTGGCC
GGGTTGCGAGATCGATCAGCTCCGCGCGCTTGCGGATGGGCGACGTGCTG
CTGCTTCAGGGTAAGCCGGACGATGTGAAGGCTCTAGAGCGCGGCAACCT
GTTCAATATCTTTGGAGGCGTTGAGGCCGAGCGTTACAACCGCTCCCGTG
CGCCGCTGGCGTCTGCCATTTTCATGCTGGCGATCCTTGCCGCGACATTC
AAGTTCGCATCGCTGCCGGTTGCCGTACTTGGCGGGGCCTTCCTCATGCT
GCTGACGCGGTGCCTGTCGCCAGAGGAAGCCTATCGGCAGGTCGAGTGGA
AAATCCTGATCCTGATCGGAGCGCTGCTCTCGTTAGGCGCTGCGATGGAG
ACGAGCGGAGCGGGCCAATTCCTCGCACAAAAGCTCATTGGTTTGGTTGG
CGCGGATAGCCGTTACGCCTTACTTACCTGTTTTTTCGTGCTCACGGTGG
CA
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