mRNA_P-wetherbeei_contig51631.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51631.1.1
Unique NamemRNA_P-wetherbeei_contig51631.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig51631.1.1 vs. uniprot
Match: A0A1H1KVG6_9BACT (ABC-type transport system involved in cytochrome c biogenesis, permease component n=1 Tax=Opitutus sp. GAS368 TaxID=1882749 RepID=A0A1H1KVG6_9BACT)

HSP 1 Score: 172 bits (436), Expect = 9.310e-49
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 NGALMIVLWNAIILHARWGGLVKQRGLMCLALVGNIITSWSWFGTNMLGVGLHSYGFMDAAFWWLLFFVLTQVAVIALAQFPLDKWRSFK 270
            NGA+MIVLWNAI+LHARWGGLVKQRGLMCLA+ GNIITSWSWFGTNMLGVGLHSYGFMDAAFWWL+ FV +Q+A+IALAQ PL +WRSF+
Sbjct:  549 NGAVMIVLWNAIVLHARWGGLVKQRGLMCLAIAGNIITSWSWFGTNMLGVGLHSYGFMDAAFWWLIIFVASQLALIALAQLPLARWRSFR 638
[Close]
BLAST of mRNA_P-wetherbeei_contig51631.1.1 vs. uniprot
Match: A0A4Q1C9K8_9BACT (Cytochrome C biogenesis protein n=1 Tax=Oleiharenicola lentus TaxID=2508720 RepID=A0A4Q1C9K8_9BACT)

HSP 1 Score: 159 bits (403), Expect = 4.700e-44
Identity = 71/90 (78.89%), Postives = 82/90 (91.11%), Query Frame = 1 
Query:    1 NGALMIVLWNAIILHARWGGLVKQRGLMCLALVGNIITSWSWFGTNMLGVGLHSYGFMDAAFWWLLFFVLTQVAVIALAQFPLDKWRSFK 270
            NGAL+IV+WNA+ILHARWGGLVKQRGLM LA+ GNI+TSWSWFGTNMLGVGLHSYGFMDAAF+WL+ FV +QV +IALA  P +KWRSF+
Sbjct:  545 NGALLIVIWNAVILHARWGGLVKQRGLMGLAIFGNIVTSWSWFGTNMLGVGLHSYGFMDAAFYWLIAFVASQVLIIALAVIPQEKWRSFR 634
[Close]
BLAST of mRNA_P-wetherbeei_contig51631.1.1 vs. uniprot
Match: A0A2E4J285_9BACT (Cytochrome C biogenesis protein n=1 Tax=Opitutaceae bacterium TaxID=2006848 RepID=A0A2E4J285_9BACT)

HSP 1 Score: 159 bits (401), Expect = 7.370e-44
Identity = 71/90 (78.89%), Postives = 79/90 (87.78%), Query Frame = 1 
Query:    1 NGALMIVLWNAIILHARWGGLVKQRGLMCLALVGNIITSWSWFGTNMLGVGLHSYGFMDAAFWWLLFFVLTQVAVIALAQFPLDKWRSFK 270
            NGAL+IVLWNAIILHARWGG VKQRG+MCLA+ GNI+TSWSWFGTNMLGVGLHSYGFMDAAFW L  FV TQ+  IA+   PL+KWRSF+
Sbjct:  524 NGALIIVLWNAIILHARWGGHVKQRGIMCLAIFGNIVTSWSWFGTNMLGVGLHSYGFMDAAFWALTIFVATQLGFIAIGNIPLNKWRSFR 613
[Close]
BLAST of mRNA_P-wetherbeei_contig51631.1.1 vs. uniprot
Match: A0A1D8AZD9_9BACT (Cytochrome c biogenesis protein CcsA n=1 Tax=Lacunisphaera limnophila TaxID=1838286 RepID=A0A1D8AZD9_9BACT)

HSP 1 Score: 158 bits (399), Expect = 1.750e-43
Identity = 70/90 (77.78%), Postives = 82/90 (91.11%), Query Frame = 1 
Query:    1 NGALMIVLWNAIILHARWGGLVKQRGLMCLALVGNIITSWSWFGTNMLGVGLHSYGFMDAAFWWLLFFVLTQVAVIALAQFPLDKWRSFK 270
            NGAL+IV+WNA+ILHARWGG+VKQRGLM LAL GNI+TSWSWFGTNMLGVGLHSYGFMDAAF+WL+ FV +Q+ +IAL   PL+KWRSF+
Sbjct:  545 NGALLIVIWNAVILHARWGGIVKQRGLMGLALFGNIVTSWSWFGTNMLGVGLHSYGFMDAAFYWLIAFVSSQLLLIALTLIPLEKWRSFR 634
[Close]
BLAST of mRNA_P-wetherbeei_contig51631.1.1 vs. uniprot
Match: A0A257LLV0_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobiales bacterium VVV1 TaxID=2015575 RepID=A0A257LLV0_9BACT)

HSP 1 Score: 144 bits (363), Expect = 3.840e-43
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:    4 GALMIVLWNAIILHARWGGLVKQRGLMCLALVGNIITSWSWFGTNMLGVGLHSYGFMDAAFWWLLFFVLTQVAVIALAQFPLDKWRS 264
            GAL+IV+WNAIILHARWGG++KQRGLM +++ GNI+T+WSWFG NMLGVGLHSYGFMDAAFWWL+ FV  Q+ VIAL   P   WRS
Sbjct:    1 GALIIVIWNAIILHARWGGMIKQRGLMGMSIFGNIVTAWSWFGVNMLGVGLHSYGFMDAAFWWLIAFVARQLVVIALIALPPGVWRS 87
[Close]
BLAST of mRNA_P-wetherbeei_contig51631.1.1 vs. uniprot
Match: A0A1J5SUC3_9ZZZZ (Cytochrome c biogenesis protein CcsA n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5SUC3_9ZZZZ)

HSP 1 Score: 155 bits (392), Expect = 1.370e-42
Identity = 68/88 (77.27%), Postives = 81/88 (92.05%), Query Frame = 1 
Query:    1 NGALMIVLWNAIILHARWGGLVKQRGLMCLALVGNIITSWSWFGTNMLGVGLHSYGFMDAAFWWLLFFVLTQVAVIALAQFPLDKWRS 264
            NGAL+IVLWNA+ILHARWGG+V+QRGLM LA+ GNI+TSWSWFGTNMLGVGLHSYGFM AAF+WL+ FVL+Q+A IA+A  P+D+WRS
Sbjct:  523 NGALIIVLWNAVILHARWGGMVRQRGLMALAIFGNIVTSWSWFGTNMLGVGLHSYGFMAAAFYWLIAFVLSQLAFIAIATLPVDRWRS 610
[Close]
BLAST of mRNA_P-wetherbeei_contig51631.1.1 vs. uniprot
Match: A0A3E1EJX6_9BACT (ABC-type transport system involved in cytochrome c biogenesis n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A3E1EJX6_9BACT)

HSP 1 Score: 155 bits (392), Expect = 1.490e-42
Identity = 66/90 (73.33%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:    1 NGALMIVLWNAIILHARWGGLVKQRGLMCLALVGNIITSWSWFGTNMLGVGLHSYGFMDAAFWWLLFFVLTQVAVIALAQFPLDKWRSFK 270
            NGAL+IV+WNA+ILHARWGGLVKQRGLMCLA+ GNI+T+WSWFG N+LGVGLHSYGF+++ F WL+ FVL+Q A IALA  PL++WRSF+
Sbjct:  532 NGALIIVIWNAVILHARWGGLVKQRGLMCLAVFGNIVTAWSWFGVNLLGVGLHSYGFVESTFLWLILFVLSQAAFIALANLPLERWRSFR 621
[Close]
BLAST of mRNA_P-wetherbeei_contig51631.1.1 vs. uniprot
Match: A0A0E3YWC2_9BACT (Cytochrome C biogenesis protein n=1 Tax=Verrucomicrobia bacterium IMCC26134 TaxID=1637999 RepID=A0A0E3YWC2_9BACT)

HSP 1 Score: 154 bits (388), Expect = 5.280e-42
Identity = 69/91 (75.82%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    1 NGALMIVLWNAIILHARWGGLVKQRGLMCLALVGNIITSWSWFGTNMLGVGLHSYGFMDAAFWWLLFFVLTQVAVIALAQFPLDKWRSFKA 273
            NGAL+IVLWNA+ILHARWGGLVK RGLM LA+ GNI+T+WSWFG NMLGVGLHSYGFMD+A WWL+ FV TQ+AV+ +A  PL  WRSFKA
Sbjct:  525 NGALIIVLWNALILHARWGGLVKARGLMNLAIFGNIVTAWSWFGVNMLGVGLHSYGFMDSAMWWLVAFVGTQLAVMLIASLPLANWRSFKA 615
[Close]
BLAST of mRNA_P-wetherbeei_contig51631.1.1 vs. uniprot
Match: A0A2T6CWV7_9BACT (Cytochrome C biogenesis protein n=2 Tax=Opitutus sp. ER46 TaxID=2161864 RepID=A0A2T6CWV7_9BACT)

HSP 1 Score: 154 bits (390), Expect = 5.310e-42
Identity = 68/90 (75.56%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:    1 NGALMIVLWNAIILHARWGGLVKQRGLMCLALVGNIITSWSWFGTNMLGVGLHSYGFMDAAFWWLLFFVLTQVAVIALAQFPLDKWRSFK 270
            NGAL+IV+WNAIILHARWGGL++QRGLM LA+ GN++T WSWFGTNMLGVGLHSYGF DAAFW L+ FV +Q+A+IALA  PL+KWRSF+
Sbjct:  602 NGALIIVIWNAIILHARWGGLIRQRGLMNLAIFGNVVTGWSWFGTNMLGVGLHSYGFTDAAFWILITFVASQLALIALAAIPLEKWRSFR 691
[Close]
BLAST of mRNA_P-wetherbeei_contig51631.1.1 vs. uniprot
Match: B1ZTY8_OPITP (Cytochrome c assembly protein n=2 Tax=Opitutus terrae TaxID=107709 RepID=B1ZTY8_OPITP)

HSP 1 Score: 153 bits (387), Expect = 7.190e-42
Identity = 67/88 (76.14%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:    1 NGALMIVLWNAIILHARWGGLVKQRGLMCLALVGNIITSWSWFGTNMLGVGLHSYGFMDAAFWWLLFFVLTQVAVIALAQFPLDKWRS 264
            NGAL+IVLWNA+ILHARWGGLVK RGLM LA+ GNI+TSWSWFG NMLGVGLHSYGFMDA FWWL+ FV++QV  + +A  PL+KWRS
Sbjct:  524 NGALIIVLWNALILHARWGGLVKARGLMVLAIFGNIVTSWSWFGVNMLGVGLHSYGFMDAGFWWLMLFVVSQVVAMLIAGTPLEKWRS 611
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51631.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1H1KVG6_9BACT9.310e-4984.44ABC-type transport system involved in cytochrome c... [more]
A0A4Q1C9K8_9BACT4.700e-4478.89Cytochrome C biogenesis protein n=1 Tax=Oleihareni... [more]
A0A2E4J285_9BACT7.370e-4478.89Cytochrome C biogenesis protein n=1 Tax=Opitutacea... [more]
A0A1D8AZD9_9BACT1.750e-4377.78Cytochrome c biogenesis protein CcsA n=1 Tax=Lacun... [more]
A0A257LLV0_9BACT3.840e-4372.41Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
A0A1J5SUC3_9ZZZZ1.370e-4277.27Cytochrome c biogenesis protein CcsA n=1 Tax=mine ... [more]
A0A3E1EJX6_9BACT1.490e-4273.33ABC-type transport system involved in cytochrome c... [more]
A0A0E3YWC2_9BACT5.280e-4275.82Cytochrome C biogenesis protein n=1 Tax=Verrucomic... [more]
A0A2T6CWV7_9BACT5.310e-4275.56Cytochrome C biogenesis protein n=2 Tax=Opitutus s... [more]
B1ZTY8_OPITP7.190e-4276.14Cytochrome c assembly protein n=2 Tax=Opitutus ter... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51631contigP-wetherbeei_contig51631:1..276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog452637.Oter_2588
PFAMsCytochrom_C_asm
Model size276
Max annot lvl414999|Opitutae
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.3e-39
EggNOG OGsCOG0755@1|root,COG0755@2|Bacteria,46SIH@74201|Verrucomicrobia,3K7UF@414999|Opitutae
DescriptionPFAM cytochrome c assembly protein
Cds size264
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186775.3061662-UTR-P-wetherbeei_contig51631:0..121683186775.3061662-UTR-P-wetherbeei_contig51631:0..12Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig51631 1..12 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186775.3166142-CDS-P-wetherbeei_contig51631:12..2761683186775.3166142-CDS-P-wetherbeei_contig51631:12..276Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51631 13..276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51631.1.1prot_P-wetherbeei_contig51631.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51631 13..276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51631.1.1

>prot_P-wetherbeei_contig51631.1.1 ID=prot_P-wetherbeei_contig51631.1.1|Name=mRNA_P-wetherbeei_contig51631.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
MIVLWNAIILHARWGGLVKQRGLMCLALVGNIITSWSWFGTNMLGVGLHS
YGFMDAAFWWLLFFVLTQVAVIALAQFPLDKWRSFKA*
back to top

mRNA from alignment at P-wetherbeei_contig51631:1..276+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51631.1.1 ID=mRNA_P-wetherbeei_contig51631.1.1|Name=mRNA_P-wetherbeei_contig51631.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig51631:1..276+ (Phaeothamnion wetherbeei SAG_119_79)
AACGGCGCGCTCATGATCGTCCTCTGGAACGCCATCATCCTTCACGCCCG
CTGGGGCGGCCTGGTGAAACAGCGCGGCCTCATGTGCCTCGCCCTCGTCG
GCAACATCATCACGAGCTGGAGCTGGTTCGGCACCAACATGCTCGGCGTC
GGCCTCCACAGCTATGGCTTCATGGACGCCGCCTTCTGGTGGCTGCTTTT
CTTCGTCCTGACCCAGGTCGCGGTGATCGCCCTCGCCCAGTTCCCGCTCG
ACAAGTGGCGGAGCTTCAAGGCGTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig51631:1..276+

>mRNA_P-wetherbeei_contig51631.1.1 ID=mRNA_P-wetherbeei_contig51631.1.1|Name=mRNA_P-wetherbeei_contig51631.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig51631:1..276+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGTCCTCTGGAACGCCATCATCCTTCACGCCCGCTGGGGCGGCCT
GGTGAAACAGCGCGGCCTCATGTGCCTCGCCCTCGTCGGCAACATCATCA
CGAGCTGGAGCTGGTTCGGCACCAACATGCTCGGCGTCGGCCTCCACAGC
TATGGCTTCATGGACGCCGCCTTCTGGTGGCTGCTTTTCTTCGTCCTGAC
CCAGGTCGCGGTGATCGCCCTCGCCCAGTTCCCGCTCGACAAGTGGCGGA
GCTTCAAGGCGTAG
back to top