mRNA_P-wetherbeei_contig5160.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: A0A835YIY2_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIY2_9STRA) HSP 1 Score: 190 bits (482), Expect = 9.450e-59 Identity = 101/143 (70.63%), Postives = 114/143 (79.72%), Query Frame = 1
Query: 1 PFMERPPMLDGSAVGDFGFDPLGMSNQLDPVHTQAAELKHGRVAMLAVVGFLVSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVELQSLKKMYDGKSTDPWEILTQDPAGAKQFAGKSAADKAKSQLQEIKNGRLV 429
PF++RPP L G GD GFDPLGMS L+ + QAAELKH RVAMLAVVG LV+QF+HLPA+QFSAT+PL A+ VPLAGHLQIF LIA +E+ SL + YD STD W L QDP+GAKQFA KSAADKAKSQLQEIKNGRL
Sbjct: 50 PFIQRPPALTGEMPGDVGFDPLGMSENLNLGYMQAAELKHCRVAMLAVVGVLVTQFIHLPADQFSATSPLDAIAKVPLAGHLQIFGLIAGLEMGSLNRTYDD-STDAWGKLIQDPSGAKQFAAKSAADKAKSQLQEIKNGRLA 191
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: D8LMR8_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR8_ECTSI) HSP 1 Score: 150 bits (380), Expect = 2.870e-43 Identity = 74/143 (51.75%), Postives = 99/143 (69.23%), Query Frame = 1
Query: 1 PFMERPPMLDGSAVGDFGFDPLGMSNQLDPVHTQAAELKHGRVAMLAVVGFLVSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVELQSLKKMYDGKSTDPWEILTQDPAGAKQFAGKSAADKAKSQLQEIKNGRLV 429
PF+E P LDGS +GDFGFDPLG++ +D +AAE+KHGRVAMLAVVGFL++Q+VHLP +QF A PL+ALT VP Q+F I E+ ++ + Y +TDPWEIL +DP GA F KS ++ + +L E+K+ RL
Sbjct: 50 PFLESPATLDGSMIGDFGFDPLGLTENIDIPFARAAEIKHGRVAMLAVVGFLLTQYVHLPGDQFQA-GPLEALTTVPAGAQAQVFTFIGTFEMAAILQTYSEDTTDPWEILLKDPMGADLFYKKSEKEQERLKLSEVKHARLA 191
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: W7TX20_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TX20_9STRA) HSP 1 Score: 132 bits (332), Expect = 3.630e-36 Identity = 73/144 (50.69%), Postives = 98/144 (68.06%), Query Frame = 1
Query: 1 PFMERPPMLDGSAVGDFGFDPLGMSNQLDPV-HTQAAELKHGRVAMLAVVGFLVSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVELQSLKKMYDGKSTDPWEILTQDPAGAKQFAGKSAADKAKSQLQEIKNGRLV 429
PF+ P LDGS VGDFGFDP+G+S+Q+ + + +AAELKHGRVAML +G++V+QFVHLP E ++ +NPLKA+ VPL H+QIFL IA +EL +L + Y PW+ L DP + GKS +L+E+KNGRL
Sbjct: 42 PFLAAPKKLDGSLVGDFGFDPMGISDQVANLKYVRAAELKHGRVAMLGFLGWVVTQFVHLPGEIYAESNPLKAIAAVPLISHVQIFLFIAAIELATLDRTYTADK--PWD-LGFDPMNMSK--GKSEQQMKDLELKELKNGRLA 180
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: R7QQX2_CHOCR (Light-harvesting complex I polypeptide n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQX2_CHOCR) HSP 1 Score: 118 bits (296), Expect = 9.370e-31 Identity = 67/143 (46.85%), Postives = 88/143 (61.54%), Query Frame = 1
Query: 1 PFMERPPMLDGSAVGDFGFDPLGMSNQLDPVHTQAAELKHGRVAMLAVVGFLVSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVELQSLKKMYDGKSTDPWEILTQDPAGAKQFAGKSAADKAKSQLQEIKNGRLV 429
PF+E P LDGS +GD GFDPL +S+ LD + A ELK+GRVAMLA VG LV +FVHLP F+ NP+KA+ VP+ G +QI + I +EL + KK Y+ + L DP G K ++ K L+E+KNGRL
Sbjct: 40 PFLEAPSKLDGSRIGDSGFDPLYLSDYLDQDYAAAGELKNGRVAMLATVGMLVQEFVHLPNPMFAEANPIKAIYAVPVEGWVQILVAITIIELATFKKTYESGAD-----LGFDPLG---MGSKGNMEELK--LKELKNGRLA 172
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: Q9FEM1_GALSU (Light-harvesting protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q9FEM1_GALSU) HSP 1 Score: 117 bits (293), Expect = 5.410e-30 Identity = 67/146 (45.89%), Postives = 95/146 (65.07%), Query Frame = 1
Query: 1 PFMERPPMLDGSAVGDFGFDPLGMSNQLDPVHTQAAELKHGRVAMLAVVGFLVSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVEL---QSLKKMYDGKSTDPWEILTQDPAGAKQFAGKSAADKAKSQLQEIKNGRLV 429
PF++ PP LDGS VGD GFDPLG S+ +D + + +ELKH R+AMLAVVGF+V +F+HLP + FS +P++A+ VP+AG +QIFLL+A +E+ ++K+ G + DP G + K A D+ L E+KNGRL
Sbjct: 59 PFLKAPPSLDGSMVGDVGFDPLGFSSIIDLRYLRESELKHCRIAMLAVVGFIVQEFIHLPGDVFSNPHPMQAIGQVPVAGWVQIFLLVAILEMIDIAAIKETLQGNREPGYFGF--DPLGLAK--DKQAHDRYL--LSELKNGRLA 198
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: Q7XYZ2_GRIJA (Light-harvesting complex I polypeptide (Fragment) n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XYZ2_GRIJA) HSP 1 Score: 114 bits (285), Expect = 1.840e-29 Identity = 66/144 (45.83%), Postives = 87/144 (60.42%), Query Frame = 1
Query: 1 PFMERPPMLDGSAVGDFGFDPLGMSNQLDPVHTQAAELKHGRVAMLAVVGFLVSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVELQSLKKMYDGKSTDPWEILTQDPAGAKQFAGKSAADKAKS-QLQEIKNGRLV 429
PF+E+P LDG+ VGD GFDPL +S+ +D + AAE+KHGR+ MLA +G LV + VHLP FS NPLKA+ VP+ G +QI +I VEL S K Y+ + L DP G DK + +L+E+KNGRL
Sbjct: 10 PFLEKPSKLDGTRVGDTGFDPLYLSDYIDLDYAAAAEIKHGRICMLATLGMLVQEVVHLPNAAFSEPNPLKAIYAVPIEGWVQIITVICLVELASFKATYETGAD-----LGFDPMGL------GTPDKIEELKLKEVKNGRLA 142
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: M2XR49_GALSU (Light-harvesting complex protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XR49_GALSU) HSP 1 Score: 115 bits (288), Expect = 3.030e-29 Identity = 65/146 (44.52%), Postives = 94/146 (64.38%), Query Frame = 1
Query: 1 PFMERPPMLDGSAVGDFGFDPLGMSNQLDPVHTQAAELKHGRVAMLAVVGFLVSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVEL---QSLKKMYDGKSTDPWEILTQDPAGAKQFAGKSAADKAKSQLQEIKNGRLV 429
PF++ PP LDG+ VGD GFDPLG S +D + + +ELKH R+AMLAVVGF+V +F+HLP + FS +P++A+ VP++G +QIFLL+A +E+ ++K+ G + DP G + K A D+ L E+KNGRL
Sbjct: 59 PFLKAPPSLDGTMVGDVGFDPLGFSTIIDLRYLRESELKHCRIAMLAVVGFIVQEFIHLPGDLFSNPHPMQAIGQVPISGWIQIFLLVAILEMIDIAAIKETLQGNREPGYFGF--DPLGLAK--DKQAHDRYL--LSELKNGRLA 198
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: A0A7S2UB14_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2UB14_9STRA) HSP 1 Score: 114 bits (284), Expect = 8.960e-29 Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 1
Query: 1 PFMERPPMLDGSAVGDFGFDPLGMSNQLDPVHTQAAELKHGRVAMLAVVGFLVSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVELQSLKKMYD 303
PF+E P LDGS VGD GFDPL +S ++ +++AAELKHGR+ MLAV+GF+V + VHLP QF +NP+ A+ VP+AG QI I+F+E+ + K YD
Sbjct: 51 PFLEAPDKLDGSMVGDQGFDPLYLSENINLEYSRAAELKHGRICMLAVLGFVVQELVHLPGPQFQESNPILAIGRVPVAGWAQILAFISFIEMATFKSQYD 151
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: A0A7S2S2F5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S2F5_9STRA) HSP 1 Score: 112 bits (281), Expect = 1.680e-28 Identity = 63/145 (43.45%), Postives = 88/145 (60.69%), Query Frame = 1
Query: 1 PFMERPPMLDGSAVGDFGFDPLGMSN-QLDPVHTQAAELKHGRVAMLAVVGFLVSQF-VHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVELQSLKKMYDGKSTDPWEILTQDPAGAKQFAGKSAADKAKSQLQEIKNGRLV 429
PF+ +P LDGS GDFGFDP+G+S Q+D + + AELKHGR+ MLA+VG ++ + +H+P QF+ +P A+ V G++QIFL I +EL + K Y P +I G GKS AD K+Q+QEIK+ RL
Sbjct: 39 PFLVKPEKLDGSMAGDFGFDPMGLSEIQVDLKYARWAELKHGRICMLAIVGMIIQEAGIHVPGSQFTEVDPFAAINKVGYVGNMQIFLTIGIIELANFDKYYG--EGQPGDI------GFGSLKGKSDADAEKAQVQEIKHARLA 175
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: A0A2V3J3F8_9FLOR (Chlorophyll a-b binding protein 7, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3F8_9FLOR) HSP 1 Score: 109 bits (273), Expect = 2.480e-27 Identity = 59/143 (41.26%), Postives = 85/143 (59.44%), Query Frame = 1
Query: 1 PFMERPPMLDGSAVGDFGFDPLGMSNQLDPVHTQAAELKHGRVAMLAVVGFLVSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVELQSLKKMYDGKSTDPWEILTQDPAGAKQFAGKSAADKAKSQLQEIKNGRLV 429
PF++ PP LDG+ VGD GFDPL +SN ++ + +A ELK+GR+AMLA +G +V +FVHLP F NPL+A+ VP+AG +QI I VEL + K ++ + ++ L G + QL+E+KN RL
Sbjct: 40 PFLDAPPKLDGTLVGDVGFDPLYLSNYINLDYARAGELKNGRIAMLACLGMMVQEFVHLPGPMFQEPNPLRAIYTVPIAGWVQILAFITIVELITFKATFETGADYGFDPLGMGKKGNLEEL----------QLKELKNARLA 172 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5160.3.1 >prot_P-wetherbeei_contig5160.3.1 ID=prot_P-wetherbeei_contig5160.3.1|Name=mRNA_P-wetherbeei_contig5160.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp MERPPMLDGSAVGDFGFDPLGMSNQLDPVHTQAAELKHGRVAMLAVVGFLback to top mRNA from alignment at P-wetherbeei_contig5160:2715..3922- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5160.3.1 ID=mRNA_P-wetherbeei_contig5160.3.1|Name=mRNA_P-wetherbeei_contig5160.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1208bp|location=Sequence derived from alignment at P-wetherbeei_contig5160:2715..3922- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5160:2715..3922- >mRNA_P-wetherbeei_contig5160.3.1 ID=mRNA_P-wetherbeei_contig5160.3.1|Name=mRNA_P-wetherbeei_contig5160.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig5160:2715..3922- (Phaeothamnion wetherbeei SAG_119_79)back to top |