mRNA_P-wetherbeei_contig5160.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5160.3.1
Unique NamemRNA_P-wetherbeei_contig5160.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: A0A835YIY2_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIY2_9STRA)

HSP 1 Score: 190 bits (482), Expect = 9.450e-59
Identity = 101/143 (70.63%), Postives = 114/143 (79.72%), Query Frame = 1
Query:    1 PFMERPPMLDGSAVGDFGFDPLGMSNQLDPVHTQAAELKHGRVAMLAVVGFLVSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVELQSLKKMYDGKSTDPWEILTQDPAGAKQFAGKSAADKAKSQLQEIKNGRLV 429
            PF++RPP L G   GD GFDPLGMS  L+  + QAAELKH RVAMLAVVG LV+QF+HLPA+QFSAT+PL A+  VPLAGHLQIF LIA +E+ SL + YD  STD W  L QDP+GAKQFA KSAADKAKSQLQEIKNGRL 
Sbjct:   50 PFIQRPPALTGEMPGDVGFDPLGMSENLNLGYMQAAELKHCRVAMLAVVGVLVTQFIHLPADQFSATSPLDAIAKVPLAGHLQIFGLIAGLEMGSLNRTYDD-STDAWGKLIQDPSGAKQFAAKSAADKAKSQLQEIKNGRLA 191          
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: D8LMR8_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR8_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 2.870e-43
Identity = 74/143 (51.75%), Postives = 99/143 (69.23%), Query Frame = 1
Query:    1 PFMERPPMLDGSAVGDFGFDPLGMSNQLDPVHTQAAELKHGRVAMLAVVGFLVSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVELQSLKKMYDGKSTDPWEILTQDPAGAKQFAGKSAADKAKSQLQEIKNGRLV 429
            PF+E P  LDGS +GDFGFDPLG++  +D    +AAE+KHGRVAMLAVVGFL++Q+VHLP +QF A  PL+ALT VP     Q+F  I   E+ ++ + Y   +TDPWEIL +DP GA  F  KS  ++ + +L E+K+ RL 
Sbjct:   50 PFLESPATLDGSMIGDFGFDPLGLTENIDIPFARAAEIKHGRVAMLAVVGFLLTQYVHLPGDQFQA-GPLEALTTVPAGAQAQVFTFIGTFEMAAILQTYSEDTTDPWEILLKDPMGADLFYKKSEKEQERLKLSEVKHARLA 191          
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: W7TX20_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TX20_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.630e-36
Identity = 73/144 (50.69%), Postives = 98/144 (68.06%), Query Frame = 1
Query:    1 PFMERPPMLDGSAVGDFGFDPLGMSNQLDPV-HTQAAELKHGRVAMLAVVGFLVSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVELQSLKKMYDGKSTDPWEILTQDPAGAKQFAGKSAADKAKSQLQEIKNGRLV 429
            PF+  P  LDGS VGDFGFDP+G+S+Q+  + + +AAELKHGRVAML  +G++V+QFVHLP E ++ +NPLKA+  VPL  H+QIFL IA +EL +L + Y      PW+ L  DP    +  GKS       +L+E+KNGRL 
Sbjct:   42 PFLAAPKKLDGSLVGDFGFDPMGISDQVANLKYVRAAELKHGRVAMLGFLGWVVTQFVHLPGEIYAESNPLKAIAAVPLISHVQIFLFIAAIELATLDRTYTADK--PWD-LGFDPMNMSK--GKSEQQMKDLELKELKNGRLA 180          
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: R7QQX2_CHOCR (Light-harvesting complex I polypeptide n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQX2_CHOCR)

HSP 1 Score: 118 bits (296), Expect = 9.370e-31
Identity = 67/143 (46.85%), Postives = 88/143 (61.54%), Query Frame = 1
Query:    1 PFMERPPMLDGSAVGDFGFDPLGMSNQLDPVHTQAAELKHGRVAMLAVVGFLVSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVELQSLKKMYDGKSTDPWEILTQDPAGAKQFAGKSAADKAKSQLQEIKNGRLV 429
            PF+E P  LDGS +GD GFDPL +S+ LD  +  A ELK+GRVAMLA VG LV +FVHLP   F+  NP+KA+  VP+ G +QI + I  +EL + KK Y+  +      L  DP G      K   ++ K  L+E+KNGRL 
Sbjct:   40 PFLEAPSKLDGSRIGDSGFDPLYLSDYLDQDYAAAGELKNGRVAMLATVGMLVQEFVHLPNPMFAEANPIKAIYAVPVEGWVQILVAITIIELATFKKTYESGAD-----LGFDPLG---MGSKGNMEELK--LKELKNGRLA 172          
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: Q9FEM1_GALSU (Light-harvesting protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q9FEM1_GALSU)

HSP 1 Score: 117 bits (293), Expect = 5.410e-30
Identity = 67/146 (45.89%), Postives = 95/146 (65.07%), Query Frame = 1
Query:    1 PFMERPPMLDGSAVGDFGFDPLGMSNQLDPVHTQAAELKHGRVAMLAVVGFLVSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVEL---QSLKKMYDGKSTDPWEILTQDPAGAKQFAGKSAADKAKSQLQEIKNGRLV 429
            PF++ PP LDGS VGD GFDPLG S+ +D  + + +ELKH R+AMLAVVGF+V +F+HLP + FS  +P++A+  VP+AG +QIFLL+A +E+    ++K+   G     +     DP G  +   K A D+    L E+KNGRL 
Sbjct:   59 PFLKAPPSLDGSMVGDVGFDPLGFSSIIDLRYLRESELKHCRIAMLAVVGFIVQEFIHLPGDVFSNPHPMQAIGQVPVAGWVQIFLLVAILEMIDIAAIKETLQGNREPGYFGF--DPLGLAK--DKQAHDRYL--LSELKNGRLA 198          
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: Q7XYZ2_GRIJA (Light-harvesting complex I polypeptide (Fragment) n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XYZ2_GRIJA)

HSP 1 Score: 114 bits (285), Expect = 1.840e-29
Identity = 66/144 (45.83%), Postives = 87/144 (60.42%), Query Frame = 1
Query:    1 PFMERPPMLDGSAVGDFGFDPLGMSNQLDPVHTQAAELKHGRVAMLAVVGFLVSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVELQSLKKMYDGKSTDPWEILTQDPAGAKQFAGKSAADKAKS-QLQEIKNGRLV 429
            PF+E+P  LDG+ VGD GFDPL +S+ +D  +  AAE+KHGR+ MLA +G LV + VHLP   FS  NPLKA+  VP+ G +QI  +I  VEL S K  Y+  +      L  DP G          DK +  +L+E+KNGRL 
Sbjct:   10 PFLEKPSKLDGTRVGDTGFDPLYLSDYIDLDYAAAAEIKHGRICMLATLGMLVQEVVHLPNAAFSEPNPLKAIYAVPIEGWVQIITVICLVELASFKATYETGAD-----LGFDPMGL------GTPDKIEELKLKEVKNGRLA 142          
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: M2XR49_GALSU (Light-harvesting complex protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XR49_GALSU)

HSP 1 Score: 115 bits (288), Expect = 3.030e-29
Identity = 65/146 (44.52%), Postives = 94/146 (64.38%), Query Frame = 1
Query:    1 PFMERPPMLDGSAVGDFGFDPLGMSNQLDPVHTQAAELKHGRVAMLAVVGFLVSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVEL---QSLKKMYDGKSTDPWEILTQDPAGAKQFAGKSAADKAKSQLQEIKNGRLV 429
            PF++ PP LDG+ VGD GFDPLG S  +D  + + +ELKH R+AMLAVVGF+V +F+HLP + FS  +P++A+  VP++G +QIFLL+A +E+    ++K+   G     +     DP G  +   K A D+    L E+KNGRL 
Sbjct:   59 PFLKAPPSLDGTMVGDVGFDPLGFSTIIDLRYLRESELKHCRIAMLAVVGFIVQEFIHLPGDLFSNPHPMQAIGQVPISGWIQIFLLVAILEMIDIAAIKETLQGNREPGYFGF--DPLGLAK--DKQAHDRYL--LSELKNGRLA 198          
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: A0A7S2UB14_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2UB14_9STRA)

HSP 1 Score: 114 bits (284), Expect = 8.960e-29
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 PFMERPPMLDGSAVGDFGFDPLGMSNQLDPVHTQAAELKHGRVAMLAVVGFLVSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVELQSLKKMYD 303
            PF+E P  LDGS VGD GFDPL +S  ++  +++AAELKHGR+ MLAV+GF+V + VHLP  QF  +NP+ A+  VP+AG  QI   I+F+E+ + K  YD
Sbjct:   51 PFLEAPDKLDGSMVGDQGFDPLYLSENINLEYSRAAELKHGRICMLAVLGFVVQELVHLPGPQFQESNPILAIGRVPVAGWAQILAFISFIEMATFKSQYD 151          
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: A0A7S2S2F5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S2F5_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.680e-28
Identity = 63/145 (43.45%), Postives = 88/145 (60.69%), Query Frame = 1
Query:    1 PFMERPPMLDGSAVGDFGFDPLGMSN-QLDPVHTQAAELKHGRVAMLAVVGFLVSQF-VHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVELQSLKKMYDGKSTDPWEILTQDPAGAKQFAGKSAADKAKSQLQEIKNGRLV 429
            PF+ +P  LDGS  GDFGFDP+G+S  Q+D  + + AELKHGR+ MLA+VG ++ +  +H+P  QF+  +P  A+  V   G++QIFL I  +EL +  K Y      P +I      G     GKS AD  K+Q+QEIK+ RL 
Sbjct:   39 PFLVKPEKLDGSMAGDFGFDPMGLSEIQVDLKYARWAELKHGRICMLAIVGMIIQEAGIHVPGSQFTEVDPFAAINKVGYVGNMQIFLTIGIIELANFDKYYG--EGQPGDI------GFGSLKGKSDADAEKAQVQEIKHARLA 175          
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Match: A0A2V3J3F8_9FLOR (Chlorophyll a-b binding protein 7, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3F8_9FLOR)

HSP 1 Score: 109 bits (273), Expect = 2.480e-27
Identity = 59/143 (41.26%), Postives = 85/143 (59.44%), Query Frame = 1
Query:    1 PFMERPPMLDGSAVGDFGFDPLGMSNQLDPVHTQAAELKHGRVAMLAVVGFLVSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVELQSLKKMYDGKSTDPWEILTQDPAGAKQFAGKSAADKAKSQLQEIKNGRLV 429
            PF++ PP LDG+ VGD GFDPL +SN ++  + +A ELK+GR+AMLA +G +V +FVHLP   F   NPL+A+  VP+AG +QI   I  VEL + K  ++  +   ++ L     G  +            QL+E+KN RL 
Sbjct:   40 PFLDAPPKLDGTLVGDVGFDPLYLSNYINLDYARAGELKNGRIAMLACLGMMVQEFVHLPGPMFQEPNPLRAIYTVPIAGWVQILAFITIVELITFKATFETGADYGFDPLGMGKKGNLEEL----------QLKELKNARLA 172          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5160.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YIY2_9STRA9.450e-5970.63Light harvesting complex protein n=1 Tax=Tribonema... [more]
D8LMR8_ECTSI2.870e-4351.75Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
W7TX20_9STRA3.630e-3650.69Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
R7QQX2_CHOCR9.370e-3146.85Light-harvesting complex I polypeptide n=1 Tax=Cho... [more]
Q9FEM1_GALSU5.410e-3045.89Light-harvesting protein n=1 Tax=Galdieria sulphur... [more]
Q7XYZ2_GRIJA1.840e-2945.83Light-harvesting complex I polypeptide (Fragment) ... [more]
M2XR49_GALSU3.030e-2944.52Light-harvesting complex protein n=1 Tax=Galdieria... [more]
A0A7S2UB14_9STRA8.960e-2952.48Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S2S2F5_9STRA1.680e-2843.45Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A2V3J3F8_9FLOR2.480e-2741.26Chlorophyll a-b binding protein 7, chloroplastic n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5160contigP-wetherbeei_contig5160:2715..3922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LMR8
Preferred nameLhcr3
PFAMsChloroa_b-bind
Model size438
Max annot lvl2759|Eukaryota
KEGG koko:K08907
KEGG Pathwayko00196,map00196
Hectar predicted targeting categoryother localisation
Exons4
Evalue1e-42
EggNOG OGs2CYNJ@1|root,2S5BM@2759|Eukaryota
DescriptionChlorophyll A-B binding protein
Cds size432
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186775.085728-CDS-P-wetherbeei_contig5160:2714..28931683186775.085728-CDS-P-wetherbeei_contig5160:2714..2893Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5160 2715..2893 -
1683186775.098017-CDS-P-wetherbeei_contig5160:3213..33551683186775.098017-CDS-P-wetherbeei_contig5160:3213..3355Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5160 3214..3355 -
1683186775.10798-CDS-P-wetherbeei_contig5160:3612..36261683186775.10798-CDS-P-wetherbeei_contig5160:3612..3626Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5160 3613..3626 -
1683186775.1178436-CDS-P-wetherbeei_contig5160:3819..39161683186775.1178436-CDS-P-wetherbeei_contig5160:3819..3916Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5160 3820..3916 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186775.1462839-UTR-P-wetherbeei_contig5160:3916..39221683186775.1462839-UTR-P-wetherbeei_contig5160:3916..3922Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5160 3917..3922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5160.3.1prot_P-wetherbeei_contig5160.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5160 2715..3916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5160.3.1

>prot_P-wetherbeei_contig5160.3.1 ID=prot_P-wetherbeei_contig5160.3.1|Name=mRNA_P-wetherbeei_contig5160.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
MERPPMLDGSAVGDFGFDPLGMSNQLDPVHTQAAELKHGRVAMLAVVGFL
VSQFVHLPAEQFSATNPLKALTMVPLAGHLQIFLLIAFVELQSLKKMYDG
KSTDPWEILTQDPAGAKQFAGKSAADKAKSQLQEIKNGRLVSSS
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mRNA from alignment at P-wetherbeei_contig5160:2715..3922-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5160.3.1 ID=mRNA_P-wetherbeei_contig5160.3.1|Name=mRNA_P-wetherbeei_contig5160.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1208bp|location=Sequence derived from alignment at P-wetherbeei_contig5160:2715..3922- (Phaeothamnion wetherbeei SAG_119_79)
CCCTTCATGGAGCGGCCGCCGATGCTGGACGGCTCGGCCGTTGGTGACTT CGGCTTTGACCCGCTCGGCATGTCCAACCAGCTGGACCCCGTCCACACCC AGGGTGAGCGCACCACCGAGGCCAGCGGCGCAAAAAATTGCATTCGGGGG GAGTGATCAAGTTGCATAGGTTAATTTCGTTGCTTGTTAATCTCCTCAAT TGGACCAGTTGGAGCTAAACAATCGTTCGCACAATTCCCTCGCTCCTTTT CTCTGCCTGTGGCAAATGCCTTGATCGGGCTGTAACTGGACTCCAGCCGC TGAGCTCAAGGTAAGAGGGGCATGTACTGTGTTGACCGGTATATTAACGT CTTTCGATTCTGAAGCGCACATCGTTTTTATGGTGTTTCCCAGGGGCAAG CCACCTTAACTCGTGAAGGCGCAGACCGCGGGGAGAAGTGGCAGCATTTT CGTCTGTTCTGGCGCGAAAACCTTACTGACCAAGAAACTCCTTCTCCCTG TTCTCTCCCCTCCCGCTTCGCCCGTGGATGGCTGGTGTTGTTGGATTACC GGACCACCACATTCCAGCACGGGAGAGTGGCGATGCTCGCTGTTGTCGGG TTCCTCGTTTCGCAGTTTGTGCACCTGCCGGCGGAGCAATTCAGCGCAAC GAACCCGCTGAAGGCACTGACGATGGTGCCGTTGGCCGGCCACCTCCAGA TTTTCCTTCGTGAGTTCCATTTTACGATCTCAGCAGTCGGTGTTGATCGG CTCTTGTTATGCCTTTGCGTGGTCGATTTGTTTTCATCCTACCTTTCCAC GCAGACTTCGTTCATCTTACGTCCGGTTAAGGCCTGTTTGTGTGACCACA ATGTGCTCTCCTTTCATGCTTTCTATAGCCGCTGTTAAGTATCTATGGTT AAGGTCTTCTTGCCTTGTTTTACCGCTGCGGTTGGGGCAGGCTGCATTTT GTGGTGTCCGGTCATGGTCTGCGTAGTGACTGTCTGTCTCCCTTTCCCAT CTCTTGCATTTTCACCAAAATCACTCCAGTGATTGCGTTCGTGGAGCTGC AGTCGCTGAAGAAGATGTACGACGGCAAGTCAACGGACCCGTGGGAGATC CTGACCCAGGACCCGGCCGGGGCCAAGCAGTTTGCCGGCAAATCAGCGGC CGACAAGGCCAAGAGCCAGCTCCAGGAGATCAAGAACGGCCGCCTGGTAA GCTCGAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5160:2715..3922-

>mRNA_P-wetherbeei_contig5160.3.1 ID=mRNA_P-wetherbeei_contig5160.3.1|Name=mRNA_P-wetherbeei_contig5160.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig5160:2715..3922- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCGGCCGCCGATGCTGGACGGCTCGGCCGTTGGTGACTTCGGCTT
TGACCCGCTCGGCATGTCCAACCAGCTGGACCCCGTCCACACCCAGGCCG
CTGAGCTCAAGCACGGGAGAGTGGCGATGCTCGCTGTTGTCGGGTTCCTC
GTTTCGCAGTTTGTGCACCTGCCGGCGGAGCAATTCAGCGCAACGAACCC
GCTGAAGGCACTGACGATGGTGCCGTTGGCCGGCCACCTCCAGATTTTCC
TTCTGATTGCGTTCGTGGAGCTGCAGTCGCTGAAGAAGATGTACGACGGC
AAGTCAACGGACCCGTGGGAGATCCTGACCCAGGACCCGGCCGGGGCCAA
GCAGTTTGCCGGCAAATCAGCGGCCGACAAGGCCAAGAGCCAGCTCCAGG
AGATCAAGAACGGCCGCCTGGTAAGCTCGAGC
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