mRNA_P-wetherbeei_contig5155.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5155.3.1
Unique NamemRNA_P-wetherbeei_contig5155.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5155.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5155contigP-wetherbeei_contig5155:1875..3761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1140
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_003270.1
Cds size1140
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186774.408779-CDS-P-wetherbeei_contig5155:1874..20811683186774.408779-CDS-P-wetherbeei_contig5155:1874..2081Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5155 1875..2081 +
1683186774.4192522-CDS-P-wetherbeei_contig5155:2231..26401683186774.4192522-CDS-P-wetherbeei_contig5155:2231..2640Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5155 2232..2640 +
1683186774.429048-CDS-P-wetherbeei_contig5155:3237..37611683186774.429048-CDS-P-wetherbeei_contig5155:3237..3761Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5155 3238..3761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5155.3.1prot_P-wetherbeei_contig5155.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5155 1875..3761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5155.3.1

>prot_P-wetherbeei_contig5155.3.1 ID=prot_P-wetherbeei_contig5155.3.1|Name=mRNA_P-wetherbeei_contig5155.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=380bp
MMATRPAPSQAAQVQERLQPKPVGGIPANELEEEREPLLDLVDAAASRRD
AAPHSTFDIPPPPPLTATQALFTLKRFECSFSSLTPPAPSRYQTQDSSAA
YSNLGVSSFGASSTASFSTSAVASVRDYSSLYAPSQLEEDPVIYRGLYPA
VAGPTAPSAMETASAPASAMWMSMPAAAGTTAAAAPAAQAAAAAPEWSAA
SSAVAAANSDASAATSQQVVEELLAENERLRLLVEEYEQQNREAGAAMRL
SQQAAAAVSPYPGAAAPRAVLQSAGAVTRQQGLLQQQQRQQRQQRQAAWQ
QAIRGVNAPAAESASAGTVTSRQPAAAAVGMAARAPATAIKHVRCQCMQF
LQVPAHAELVYCPTCGHTSRATAENSFQPP
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mRNA from alignment at P-wetherbeei_contig5155:1875..3761+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5155.3.1 ID=mRNA_P-wetherbeei_contig5155.3.1|Name=mRNA_P-wetherbeei_contig5155.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1887bp|location=Sequence derived from alignment at P-wetherbeei_contig5155:1875..3761+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGGCGACACGGCCAGCGCCGAGTCAAGCCGCCCAAGTCCAGGAGCG
GCTGCAACCGAAGCCCGTAGGGGGCATCCCGGCGAACGAACTCGAAGAAG
AGCGAGAACCTCTCCTCGACCTTGTGGACGCTGCAGCCAGCAGGAGAGAT
GCTGCACCGCACAGTACATTTGACATTCCGCCGCCACCGCCGCTCACGGC
AACGCAGGTAAATGCGTAAAGCTTCTTGACTTCAATCGCTCCAAAGAATT
GCGGCTCGATTGGTCTGCAAATGCTGCTCGGAATCGCGTAGCCTTTGGCG
ATTACAGAGAAATCGCTTTGCGTCTTGCAGGCATATTTTTGCGGGTACGA
TCGATAGGCGCTTTTTACCCTGAAACGTTTTGAATGCTCTTTCTCTAGTC
TAACCCCTCCAGCACCCTCCCGTTATCAAACACAGGACTCGAGCGCGGCA
TACTCAAATCTCGGCGTCTCCAGCTTCGGAGCGTCCTCAACGGCGTCGTT
CTCGACATCCGCGGTGGCATCAGTCAGGGATTACAGCAGCCTCTATGCAC
CGTCGCAGCTCGAGGAGGATCCCGTCATCTACCGCGGCCTCTACCCGGCG
GTAGCGGGCCCGACGGCGCCATCGGCGATGGAAACGGCGTCTGCGCCCGC
GTCTGCAATGTGGATGTCTATGCCCGCAGCAGCAGGAACGACGGCCGCTG
CGGCTCCAGCTGCGCAGGCGGCGGCAGCAGCACCAGAATGGAGCGCTGCG
AGCTCTGCTGTAGCAGGTGCGGACGACAATGTCAACACAACGCACCGTTT
TTCTTTCGTCTTTGCTTCAACTCACAAATGTAGACTACCAAAACTTTCAA
CTTGTATTCATCGTCCCGTGTGGATGTTGGGCTTCGCATCCAAGCGATTC
AGCGTATAATATATCTGGGCATTCTCGTCTCCCGCATTTCATAGTTTTAT
CTGTTGCGCGTTTGTGATCCGGTTTCCTGATCTATTTACATCGTGAAGGG
CCGCTACGGGTGTTGATGTTTGGTCGTTATATGGAAACGCCACTGTGCCG
TGCGTATGGCTGTTAAGCTTGCCAGCTTCGGAGGATATGCCCCCATGGCC
TCTATGTCCCTTTTCTTCCCGTTTGCTCCTGACTTTTTATTCTTTGTTAC
CTACGTGTATACCATATCTCTGATTCACAGCCTGAGGTCAAGTTTCTTTT
TAGCAACTCCTACGTTGGTATTGATTCGAACTCCTCCTTGCATGCTACTC
TCTGCGCCCTTTGTTTTTCTATGCATCTGATTTCTCGGTGCCTCCCGCCC
ATCCAATCCTTCTTGTCCCTTTTTCTTGGTGCTCTCTTCATTGGCCGGTC
ATTGCATCATCAGCCGCGAACTCCGACGCGAGCGCCGCCACCAGCCAGCA
GGTGGTGGAGGAACTTCTTGCGGAGAACGAGCGACTGCGGTTGCTCGTAG
AGGAATACGAGCAGCAGAACCGCGAGGCCGGAGCGGCCATGCGCCTCAGC
CAACAGGCCGCCGCCGCCGTTTCGCCGTACCCGGGAGCCGCCGCCCCGCG
GGCCGTTCTACAGTCGGCAGGGGCAGTGACGCGGCAGCAAGGGCTATTAC
AGCAGCAGCAGCGGCAGCAGCGGCAGCAGCGGCAGGCGGCGTGGCAGCAG
GCCATACGCGGCGTCAACGCTCCGGCGGCAGAGTCTGCCAGTGCCGGCAC
GGTGACATCGCGTCAGCCGGCGGCGGCAGCTGTGGGGATGGCGGCCAGGG
CGCCTGCCACGGCCATCAAGCACGTGCGCTGCCAGTGTATGCAGTTTCTA
CAGGTGCCGGCGCACGCCGAACTGGTGTACTGCCCGACCTGCGGCCACAC
GTCGCGGGCGACGGCTGAGAACTCATTTCAGCCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5155:1875..3761+

>mRNA_P-wetherbeei_contig5155.3.1 ID=mRNA_P-wetherbeei_contig5155.3.1|Name=mRNA_P-wetherbeei_contig5155.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1140bp|location=Sequence derived from alignment at P-wetherbeei_contig5155:1875..3761+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGGCGACACGGCCAGCGCCGAGTCAAGCCGCCCAAGTCCAGGAGCG
GCTGCAACCGAAGCCCGTAGGGGGCATCCCGGCGAACGAACTCGAAGAAG
AGCGAGAACCTCTCCTCGACCTTGTGGACGCTGCAGCCAGCAGGAGAGAT
GCTGCACCGCACAGTACATTTGACATTCCGCCGCCACCGCCGCTCACGGC
AACGCAGGCGCTTTTTACCCTGAAACGTTTTGAATGCTCTTTCTCTAGTC
TAACCCCTCCAGCACCCTCCCGTTATCAAACACAGGACTCGAGCGCGGCA
TACTCAAATCTCGGCGTCTCCAGCTTCGGAGCGTCCTCAACGGCGTCGTT
CTCGACATCCGCGGTGGCATCAGTCAGGGATTACAGCAGCCTCTATGCAC
CGTCGCAGCTCGAGGAGGATCCCGTCATCTACCGCGGCCTCTACCCGGCG
GTAGCGGGCCCGACGGCGCCATCGGCGATGGAAACGGCGTCTGCGCCCGC
GTCTGCAATGTGGATGTCTATGCCCGCAGCAGCAGGAACGACGGCCGCTG
CGGCTCCAGCTGCGCAGGCGGCGGCAGCAGCACCAGAATGGAGCGCTGCG
AGCTCTGCTGTAGCAGCCGCGAACTCCGACGCGAGCGCCGCCACCAGCCA
GCAGGTGGTGGAGGAACTTCTTGCGGAGAACGAGCGACTGCGGTTGCTCG
TAGAGGAATACGAGCAGCAGAACCGCGAGGCCGGAGCGGCCATGCGCCTC
AGCCAACAGGCCGCCGCCGCCGTTTCGCCGTACCCGGGAGCCGCCGCCCC
GCGGGCCGTTCTACAGTCGGCAGGGGCAGTGACGCGGCAGCAAGGGCTAT
TACAGCAGCAGCAGCGGCAGCAGCGGCAGCAGCGGCAGGCGGCGTGGCAG
CAGGCCATACGCGGCGTCAACGCTCCGGCGGCAGAGTCTGCCAGTGCCGG
CACGGTGACATCGCGTCAGCCGGCGGCGGCAGCTGTGGGGATGGCGGCCA
GGGCGCCTGCCACGGCCATCAAGCACGTGCGCTGCCAGTGTATGCAGTTT
CTACAGGTGCCGGCGCACGCCGAACTGGTGTACTGCCCGACCTGCGGCCA
CACGTCGCGGGCGACGGCTGAGAACTCATTTCAGCCGCCG
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