mRNA_P-wetherbeei_contig5155.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5155.1.1
Unique NamemRNA_P-wetherbeei_contig5155.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5155.1.1 vs. uniprot
Match: A0A836CEW1_9STRA (Hypoxia induced protein conserved region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEW1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.290e-18
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 3
Query:  135 AKFQRKAKDDPFVPIGAFATIAFLGSGLYAFQKGHQRLSQKLMRGRVLAQGATVAVLMLGATMGARRERATP------EDKFHELNAAENKWADGTIAGVPPARE 431
            A F  K K++P VPIG   T+ FLG G+++F +G+  +SQ++MRGRVLAQG T+A LM GA M   + R  P      E +F EL A  N+WAD      P  ++
Sbjct:   26 AHFAEKFKEEPMVPIGMGITLGFLGFGVFSFIRGNSVMSQRMMRGRVLAQGVTLAFLMTGAAMQRDKLRRNPQTADKVEQQFQELQATPNRWADAQPYPTPSEQQ 130          
BLAST of mRNA_P-wetherbeei_contig5155.1.1 vs. uniprot
Match: D8LDH4_ECTSI (HIG1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDH4_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 2.490e-18
Identity = 48/110 (43.64%), Postives = 67/110 (60.91%), Query Frame = 3
Query:   99 LAAMAHQDVSTWAKFQRKAKDDPFVPIGAFATIAFLGSGLYAFQKGHQRLSQKLMRGRVLAQGATVAVLMLGATMGARRE--RATPEDKFHELNAAENKWADGTIAGVPP 422
            +  M  +  S + K   K K +P VPIGA AT+ FL SG+Y+F++G+++LSQKLMRGRV+AQG T+ V+  G  M    E  R T E K   ++   N+W+     GVPP
Sbjct:    1 MVTMDERAPSFFEKLAVKGKKEPLVPIGALATVGFLVSGIYSFKQGNKQLSQKLMRGRVVAQGFTILVMTAGFYMAGPPEMTRQTVEGKMEAISKQTNRWS-----GVPP 105          
BLAST of mRNA_P-wetherbeei_contig5155.1.1 vs. uniprot
Match: UPI00096AE975 (HIG1 domain family member 2A, mitochondrial n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096AE975)

HSP 1 Score: 75.1 bits (183), Expect = 1.510e-13
Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = 3
Query:  138 KFQRKAKDDPFVPIGAFATIAFLGSGLYAFQKGHQRLSQKLMRGRVLAQGATVAVLMLGATMGARRE 338
            KF RK K++PFVPIG  AT   LG GL+ F+ GH+++SQ +MR R++AQG TV  L++G  +GA+++
Sbjct:   34 KFIRKFKENPFVPIGCLATTGALGYGLWTFRTGHRKMSQYMMRTRIVAQGLTVLALVVGVGLGAQKQ 100          
BLAST of mRNA_P-wetherbeei_contig5155.1.1 vs. uniprot
Match: T1ICY2_RHOPR (HIG1 domain-containing protein (Fragment) n=2 Tax=Rhodnius TaxID=13248 RepID=T1ICY2_RHOPR)

HSP 1 Score: 74.7 bits (182), Expect = 2.400e-13
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 3
Query:  138 KFQRKAKDDPFVPIGAFATIAFLGSGLYAFQKGHQRLSQKLMRGRVLAQGATVAVLMLGATMGARRE 338
            K  RK K++PFVPIGA  T+  L  GLY+F+KG +R+SQ +MR R++AQG TV  L+ G TM A ++
Sbjct:   41 KLWRKVKENPFVPIGALVTVGCLSFGLYSFRKGERRMSQMMMRARIVAQGFTVLALVGGITMAAMKK 107          
BLAST of mRNA_P-wetherbeei_contig5155.1.1 vs. uniprot
Match: A0A8I6R997_CIMLE (HIG1 domain-containing protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6R997_CIMLE)

HSP 1 Score: 73.2 bits (178), Expect = 5.630e-13
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 3
Query:   78 INPATNLLAAMAHQDVSTWAKFQRKAKDDPFVPIGAFATIAFLGSGLYAFQKGHQRLSQKLMRGRVLAQGATVAVLMLGATMGARRE 338
            I P  ++LA     + +T+ KFQRK K++PFVPIGA AT A L  G+  F KG+ + SQ +MR RV+AQG TVA L+ G  +  +R+
Sbjct:   13 IQPGESILA----NEETTFEKFQRKFKENPFVPIGALATAACLFYGVRNFYKGNTKNSQLMMRARVVAQGLTVAALVGGILLAPKRK 95          
BLAST of mRNA_P-wetherbeei_contig5155.1.1 vs. uniprot
Match: Q66GV5_XENLA (HIG1 hypoxia inducible domain family member 2A S homeolog n=4 Tax=Xenopus TaxID=8353 RepID=Q66GV5_XENLA)

HSP 1 Score: 72.8 bits (177), Expect = 7.430e-13
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  135 AKFQRKAKDDPFVPIGAFATIAFLGSGLYAFQKGHQRLSQKLMRGRVLAQGATVAVLMLGATMGARRERAT 347
            +KF RK K++PFVPIG  AT   L  GL +F++G  R SQ LMR R+LAQG TVA +M+G  M A + R T
Sbjct:   21 SKFIRKVKENPFVPIGCLATAGALTYGLISFKQGKTRQSQLLMRTRILAQGFTVAAIMVGVVMTAMKPRDT 91          
BLAST of mRNA_P-wetherbeei_contig5155.1.1 vs. uniprot
Match: A0A0L0BNR6_LUCCU (HIG1 domain-containing protein n=1 Tax=Lucilia cuprina TaxID=7375 RepID=A0A0L0BNR6_LUCCU)

HSP 1 Score: 72.4 bits (176), Expect = 1.240e-12
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  126 STWAKFQRKAKDDPFVPIGAFATIAFLGSGLYAFQKGHQRLSQKLMRGRVLAQGATVAVLMLGATM 323
            ST  K  RK K++P VPIG  AT + LG GLY F+ G++++SQ +MR R+LAQG TVA L+ G  M
Sbjct:   29 STKEKMMRKIKENPLVPIGCLATASALGFGLYNFRTGNRKMSQMMMRARILAQGFTVAALVTGVVM 94          
BLAST of mRNA_P-wetherbeei_contig5155.1.1 vs. uniprot
Match: A0A1B0EUC2_GLOMM (HIG1 domain-containing protein n=6 Tax=Glossina TaxID=7393 RepID=A0A1B0EUC2_GLOMM)

HSP 1 Score: 72.4 bits (176), Expect = 1.310e-12
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  126 STWAKFQRKAKDDPFVPIGAFATIAFLGSGLYAFQKGHQRLSQKLMRGRVLAQGATVAVLMLGATM 323
            +T  K  RK K++P VPIG  AT + LG GLY F+ G++R+SQ +MR R++AQG TVA L++G  M
Sbjct:   31 TTKEKMMRKIKENPLVPIGCLATASALGFGLYNFRTGNRRMSQMMMRARIIAQGFTVAALVVGVVM 96          
BLAST of mRNA_P-wetherbeei_contig5155.1.1 vs. uniprot
Match: UPI0011833138 (HIG1 domain family member 2A, mitochondrial n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI0011833138)

HSP 1 Score: 71.6 bits (174), Expect = 2.340e-12
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 3
Query:  111 AHQDVSTWAKFQRKAKDDPFVPIGAFATIAFLGSGLYAFQKGHQRLSQKLMRGRVLAQGATVAVLMLGATMGA 329
            AH   +T  KF RK  ++PFVP+G  AT   L  GL++F+ G ++LSQ++MR R++AQG T+A L++G  M A
Sbjct:   22 AHHVETTSEKFGRKITENPFVPLGCLATAGALSFGLWSFRTGRRKLSQQMMRARIVAQGFTIAALVVGVMMTA 94          
BLAST of mRNA_P-wetherbeei_contig5155.1.1 vs. uniprot
Match: UPI0015684B40 (HIG1 domain family member 2A, mitochondrial-like n=2 Tax=Maniola TaxID=111919 RepID=UPI0015684B40)

HSP 1 Score: 71.6 bits (174), Expect = 2.400e-12
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 3
Query:  114 HQDVSTWAKFQRKAKDDPFVPIGAFATIAFLGSGLYAFQKGHQRLSQKLMRGRVLAQGATVAVLMLGATMGA 329
            H+  +T  KF RK  ++PFVPIG  AT   L  GL+ F+    +LSQK+MR R++AQG T+A L++G  MGA
Sbjct:   22 HRVETTQEKFVRKFSENPFVPIGCLATAGALSYGLWCFRTKRSKLSQKMMRVRIVAQGFTIAALVVGVVMGA 93          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5155.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CEW1_9STRA1.290e-1843.81Hypoxia induced protein conserved region-domain-co... [more]
D8LDH4_ECTSI2.490e-1843.64HIG1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
UPI00096AE9751.510e-1350.75HIG1 domain family member 2A, mitochondrial n=1 Ta... [more]
T1ICY2_RHOPR2.400e-1352.24HIG1 domain-containing protein (Fragment) n=2 Tax=... [more]
A0A8I6R997_CIMLE5.630e-1347.13HIG1 domain-containing protein n=1 Tax=Cimex lectu... [more]
Q66GV5_XENLA7.430e-1353.52HIG1 hypoxia inducible domain family member 2A S h... [more]
A0A0L0BNR6_LUCCU1.240e-1253.03HIG1 domain-containing protein n=1 Tax=Lucilia cup... [more]
A0A1B0EUC2_GLOMM1.310e-1251.52HIG1 domain-containing protein n=6 Tax=Glossina Ta... [more]
UPI00118331382.340e-1246.58HIG1 domain family member 2A, mitochondrial n=1 Ta... [more]
UPI0015684B402.400e-1248.61HIG1 domain family member 2A, mitochondrial-like n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5155contigP-wetherbeei_contig5155:498..1713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LDH4
Preferred nameHIGD1B
PFAMsHIG_1_N
Model size833
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001666,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005886,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007005,GO:0007154,GO:0007610,GO:0008150,GO:0008152,GO:0008535,GO:0009056,GO:0009057,GO:0009267,GO:0009605,GO:0009628,GO:0009636,GO:0009889,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010562,GO:0010604,GO:0010639,GO:0010646,GO:0010648,GO:0010821,GO:0010823,GO:0010941,GO:0016020,GO:0016021,GO:0016043,GO:0016567,GO:0016740,GO:0017004,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019866,GO:0019941,GO:0022607,GO:0023051,GO:0023057,GO:0030163,GO:0030534,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0031667,GO:0031668,GO:0031669,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032592,GO:0032991,GO:0033043,GO:0033108,GO:0033554,GO:0033617,GO:0033674,GO:0034622,GO:0036211,GO:0036293,GO:0036294,GO:0042149,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042592,GO:0042594,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043549,GO:0043618,GO:0043620,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045471,GO:0045859,GO:0045860,GO:0045937,GO:0046677,GO:0048149,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051338,GO:0051347,GO:0051603,GO:0051716,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0060255,GO:0060548,GO:0061418,GO:0061630,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070482,GO:0070647,GO:0070887,GO:0071453,GO:0071456,GO:0071496,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0071944,GO:0080090,GO:0090199,GO:0090201,GO:0097249,GO:0097250,GO:0097305,GO:0098573,GO:0098771,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1903506,GO:2000112,GO:2001141,GO:2001233,GO:2001234
Exons2
Evalue1.19e-20
EggNOG OGsKOG4431@1|root,KOG4431@2759|Eukaryota
Ec32 ortholog descriptionHypoxia induced protein, domain
Ec32 orthologEc-15_000600.1
Descriptionmitochondrial respiratory chain supercomplex assembly
Cds size330
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186774.4575274-UTR-P-wetherbeei_contig5155:497..8931683186774.4575274-UTR-P-wetherbeei_contig5155:497..893Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5155 498..893 -
1683186774.4883065-UTR-P-wetherbeei_contig5155:1606..17131683186774.4883065-UTR-P-wetherbeei_contig5155:1606..1713Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5155 1607..1713 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186774.4694695-CDS-P-wetherbeei_contig5155:893..10761683186774.4694695-CDS-P-wetherbeei_contig5155:893..1076Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5155 894..1076 -
1683186774.4788342-CDS-P-wetherbeei_contig5155:1459..16061683186774.4788342-CDS-P-wetherbeei_contig5155:1459..1606Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5155 1460..1606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5155.1.1prot_P-wetherbeei_contig5155.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5155 894..1606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5155.1.1

>prot_P-wetherbeei_contig5155.1.1 ID=prot_P-wetherbeei_contig5155.1.1|Name=mRNA_P-wetherbeei_contig5155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
MAHQDVSTWAKFQRKAKDDPFVPIGAFATIAFLGSGLYAFQKGHQRLSQK
LMRGRVLAQGATVAVLMLGATMGARRERATPEDKFHELNAAENKWADGTI
AGVPPARET*
back to top

mRNA from alignment at P-wetherbeei_contig5155:498..1713-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5155.1.1 ID=mRNA_P-wetherbeei_contig5155.1.1|Name=mRNA_P-wetherbeei_contig5155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1216bp|location=Sequence derived from alignment at P-wetherbeei_contig5155:498..1713- (Phaeothamnion wetherbeei SAG_119_79)
CGGTCTCGGCAAACCGCGGCCGCCTCGATCAGAGAAGGATCCTTTTCTCC AGCGCAGTCTTCAGTCTTCGACACTCGATAAACCCTGCTACAAATCTGCT CGCAGCGATGGCTCATCAGGATGTCTCGACGTGGGCGAAGTTCCAACGAA AAGCAAAAGACGACCCCTTCGTCCCTATCGGGGCATTTGCCACTATCGCT TTTCTCGGTTCGGGCCTCTACGCTTTCCAAAAGGGACACCAGCGTTTATC ACAGGTACGATATGCGCAATGGCTTGTCGCTAGCAAACACGCTAACGTCG TGAAATCTGTTGGACTTACCGCCTGATTGACGTTTAAGGTCCGCGGCCAT GAATGCAAAGAGCGTAGCACTTGGTTGCCGGTGCAACAGGAGTTATTCAG ACGGCATCGCCGAAGTCTACAAATCATTTTGCCACTGTCATGAATGGGTT ATGAGGGACTAGTTCTACTTTCTCTCTTTTTCCCCTGTCTCACTGGGCAT TTTGTTTTCGACCTTGGGCTTATTTCCTTAGAGATGGCAGCCGGAACACC GCCTGGAATGCTTGCATTAGAGAGGACGCGGGAAGTTTCATCTATTTCTT ACCATTCCTTCGGCATTCTTCTTTCTATCGCTTTCAGAAATTGATGCGGG GTCGCGTCCTCGCTCAGGGTGCGACGGTGGCGGTGCTCATGCTGGGGGCG ACAATGGGTGCCAGGCGAGAGCGCGCGACCCCTGAAGACAAGTTCCACGA GCTCAACGCTGCCGAGAACAAGTGGGCGGACGGCACCATTGCCGGGGTGC CGCCTGCACGAGAGACTTGAGACCTGTGTGCAGAATCTGTCGACGGTGGG GTTTGAGCCGAGGGGCTAGAGGAATCATGCGACGGCGGAAGTGTCTGTCT CTTCCATCACGGAATTGTGAGGTGAAAGTTATGTAGTCCACTGTGCTAAG AGCGGCACAGGGTGTACCATAGCGGCTGAGAGGATTTGCGGCGGCGGTTG AGGGCCGTTGCCACGTTGCCGCTACGCCGCTGCTCGCCACTGCTCTCTTG CTGCACCCAAAGATTCTAGACGCACCAGTAAAATTCATTTTATCTGAGGT CTAGCAGCAACGAGGGGTGCGACTGCATGATGCTCTCGGCCTCTTTCCGT TGCAAGCAGACATCACCAGGAACTGTAGCGGATCCTTCAACGAGTCCGGC ATCCGCTCCGTCATCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5155:498..1713-

>mRNA_P-wetherbeei_contig5155.1.1 ID=mRNA_P-wetherbeei_contig5155.1.1|Name=mRNA_P-wetherbeei_contig5155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig5155:498..1713- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTCATCAGGATGTCTCGACGTGGGCGAAGTTCCAACGAAAAGCAAA
AGACGACCCCTTCGTCCCTATCGGGGCATTTGCCACTATCGCTTTTCTCG
GTTCGGGCCTCTACGCTTTCCAAAAGGGACACCAGCGTTTATCACAGAAA
TTGATGCGGGGTCGCGTCCTCGCTCAGGGTGCGACGGTGGCGGTGCTCAT
GCTGGGGGCGACAATGGGTGCCAGGCGAGAGCGCGCGACCCCTGAAGACA
AGTTCCACGAGCTCAACGCTGCCGAGAACAAGTGGGCGGACGGCACCATT
GCCGGGGTGCCGCCTGCACGAGAGACTTGA
back to top