mRNA_P-wetherbeei_contig51528.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51528.1.1
Unique NamemRNA_P-wetherbeei_contig51528.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51528.1.1 vs. uniprot
Match: UPI001356D551 (MotA/TolQ/ExbB proton channel family protein n=1 Tax=Cognatazoarcus halotolerans TaxID=2686016 RepID=UPI001356D551)

HSP 1 Score: 204 bits (518), Expect = 9.010e-64
Identity = 102/142 (71.83%), Postives = 119/142 (83.80%), Query Frame = 1
Query:    7 KTIGSNSDRGEFLIRALRQSIVRSTARLESGLTLLASIGSIAPFVGLFGTVWGIYHALLAISATGSASIDKISGPVGEALIMTAAGLFVAIPAVLAYNAFTRLNRIELAELDGFAHDLHAYLGTGARMGARPNIRVVEKEAR 432
            +T+G + +RGEFL RALRQS+ RSTA LESGLT LASIGS APFVGLFGTVWGIYHAL+ ISA+G+A++D ++GPVGEALIMTAAGLFVAIPAVLAYNAF R NR+ELAELD FAHDLHA+  TGAR+ +    R    E+R
Sbjct:  100 QTLGGSLERGEFLTRALRQSMARSTASLESGLTTLASIGSTAPFVGLFGTVWGIYHALVGISASGAATLDHVAGPVGEALIMTAAGLFVAIPAVLAYNAFNRANRVELAELDAFAHDLHAFFTTGARLASSGKTRAASVESR 241          
BLAST of mRNA_P-wetherbeei_contig51528.1.1 vs. uniprot
Match: A0A6C1B1Y7_9RHOO (MotA/TolQ/ExbB proton channel family protein n=1 Tax=Nitrogeniibacter mangrovi TaxID=2016596 RepID=A0A6C1B1Y7_9RHOO)

HSP 1 Score: 199 bits (506), Expect = 7.160e-62
Identity = 99/138 (71.74%), Postives = 114/138 (82.61%), Query Frame = 1
Query:   10 TIGSNSDRGEFLIRALRQSIVRSTARLESGLTLLASIGSIAPFVGLFGTVWGIYHALLAISATGSASIDKISGPVGEALIMTAAGLFVAIPAVLAYNAFTRLNRIELAELDGFAHDLHAYLGTGARMGARPNIRVVEK 423
            T+GS  D GEF+ RALR+ I  STA LE GLT+LASIGS APF+GLFGTVWGIYHAL  IS TG+ASIDK++GPVGEALIMTA GLFVAIPAVLAYN F R NR+EL+ELDGFAHDLHA+  TGAR+GA   ++ + K
Sbjct:  102 TLGSTLDTGEFITRALRRGIAESTAVLERGLTVLASIGSTAPFIGLFGTVWGIYHALTTISVTGAASIDKVAGPVGEALIMTAFGLFVAIPAVLAYNGFNRANRVELSELDGFAHDLHAFFTTGARVGATAMVKPIGK 239          
BLAST of mRNA_P-wetherbeei_contig51528.1.1 vs. uniprot
Match: A0A6N6L6V9_9PROT (MotA/TolQ/ExbB proton channel family protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6N6L6V9_9PROT)

HSP 1 Score: 197 bits (501), Expect = 4.220e-61
Identity = 99/127 (77.95%), Postives = 111/127 (87.40%), Query Frame = 1
Query:   10 TIGSNSDRGEFLIRALRQSIVRSTARLESGLTLLASIGSIAPFVGLFGTVWGIYHALLAISATGSASIDKISGPVGEALIMTAAGLFVAIPAVLAYNAFTRLNRIELAELDGFAHDLHAYLGTGARM 390
            T+G   D GEF+ RALR+SI  +TARLESGLT+LASIGS APFVGLFGTVWGIYHAL +ISA+G ASIDK++GPVGEALIMTA GLFVAIPAVLAYN F R NR+EL+ELDGFAHDLHAY  TGAR+
Sbjct:  101 TLGGTLDAGEFVTRALRRSIADATARLESGLTVLASIGSTAPFVGLFGTVWGIYHALTSISASGMASIDKVAGPVGEALIMTAVGLFVAIPAVLAYNGFNRANRVELSELDGFAHDLHAYFTTGARV 227          
BLAST of mRNA_P-wetherbeei_contig51528.1.1 vs. uniprot
Match: N6YMU3_THAL4 (Biopolymer transport protein ExbB n=1 Tax=Thauera linaloolentis (strain DSM 12138 / CCUG 41526 / CIP 105981 / IAM 15112 / NBRC 102519 / 47Lol) TaxID=1123367 RepID=N6YMU3_THAL4)

HSP 1 Score: 196 bits (497), Expect = 1.510e-60
Identity = 100/132 (75.76%), Postives = 113/132 (85.61%), Query Frame = 1
Query:    7 KTIGSNSDRGEFLIRALRQSIVRSTARLESGLTLLASIGSIAPFVGLFGTVWGIYHALLAISATGSASIDKISGPVGEALIMTAAGLFVAIPAVLAYNAFTRLNRIELAELDGFAHDLHAYLGTGARMGARP 402
            +T+G   D GEF+ RALR+SI  STARLESGLT LASIGS APFVGLFGTVWGIYHAL+ ISA+G A++DK++GPVGEALIMTA GLFVAIPAVLAYNA TR NR+ELAELD FAHDLHA+L TGAR+   P
Sbjct:  100 ETLGGALDAGEFITRALRKSIAGSTARLESGLTTLASIGSTAPFVGLFGTVWGIYHALVNISASGLATLDKVAGPVGEALIMTAFGLFVAIPAVLAYNAVTRANRVELAELDAFAHDLHAWLSTGARIAPLP 231          
BLAST of mRNA_P-wetherbeei_contig51528.1.1 vs. uniprot
Match: UPI001BDBBE7A (MotA/TolQ/ExbB proton channel family protein n=1 Tax=Denitromonas sp. (strain IR12) TaxID=2795389 RepID=UPI001BDBBE7A)

HSP 1 Score: 196 bits (497), Expect = 1.710e-60
Identity = 97/127 (76.38%), Postives = 111/127 (87.40%), Query Frame = 1
Query:   10 TIGSNSDRGEFLIRALRQSIVRSTARLESGLTLLASIGSIAPFVGLFGTVWGIYHALLAISATGSASIDKISGPVGEALIMTAAGLFVAIPAVLAYNAFTRLNRIELAELDGFAHDLHAYLGTGARM 390
            T+GS  D GEF+ RALR++I  +TARLESGLT+LASIGS APFVGLFGTVWGIYHAL +IS +G AS+DK++GPVGEALIMTA GLFVAIPAVLAYN F R NR+EL+ELDGFAHDLHAY  TGAR+
Sbjct:  102 TLGSTLDAGEFVTRALRRAIADATARLESGLTILASIGSTAPFVGLFGTVWGIYHALTSISVSGMASLDKVAGPVGEALIMTAFGLFVAIPAVLAYNGFNRANRVELSELDGFAHDLHAYFATGARV 228          
BLAST of mRNA_P-wetherbeei_contig51528.1.1 vs. uniprot
Match: UPI00124BC7A2 (MotA/TolQ/ExbB proton channel family protein n=1 Tax=Lacisediminimonas profundi TaxID=2603856 RepID=UPI00124BC7A2)

HSP 1 Score: 195 bits (495), Expect = 2.040e-60
Identity = 98/129 (75.97%), Postives = 113/129 (87.60%), Query Frame = 1
Query:    7 KTIGSNSDRGEFLIRALRQSIVRSTARLESGLTLLASIGSIAPFVGLFGTVWGIYHALLAISATGSASIDKISGPVGEALIMTAAGLFVAIPAVLAYNAFTRLNRIELAELDGFAHDLHAYLGTGARMG 393
            K++ + +D GE + R LRQ I R +ARLESGLTLLAS+GS APFVGLFGTVWGIYHALLA+SA+G+  IDK++GPVGEALIMTA GL VAIPAVLAYNAFTR+NRI LAELDGFAHDLHA+L TGAR+G
Sbjct:  104 KSLNAAADPGELITRTLRQEINRVSARLESGLTLLASVGSTAPFVGLFGTVWGIYHALLAVSASGTVQIDKVAGPVGEALIMTALGLVVAIPAVLAYNAFTRVNRITLAELDGFAHDLHAFLTTGARIG 232          
BLAST of mRNA_P-wetherbeei_contig51528.1.1 vs. uniprot
Match: A0A557R2E3_9RHOO (MotA/TolQ/ExbB proton channel family protein n=2 Tax=Denitromonas halophilus TaxID=1629404 RepID=A0A557R2E3_9RHOO)

HSP 1 Score: 195 bits (496), Expect = 2.420e-60
Identity = 98/129 (75.97%), Postives = 111/129 (86.05%), Query Frame = 1
Query:    4 GKTIGSNSDRGEFLIRALRQSIVRSTARLESGLTLLASIGSIAPFVGLFGTVWGIYHALLAISATGSASIDKISGPVGEALIMTAAGLFVAIPAVLAYNAFTRLNRIELAELDGFAHDLHAYLGTGARM 390
            G T+G   D GEF+ RALR+SI  +TARLESGLT+LASIGS APFVGLFGTVWGIYHAL +IS +G ASIDK++GPVGEALIMTA GLFVAIPAVLAYN F R NR+EL+ELDGFAHDLHAY  TG+R+
Sbjct:  100 GTTLGGTLDTGEFVTRALRRSIADATARLESGLTVLASIGSTAPFVGLFGTVWGIYHALTSISLSGMASIDKVAGPVGEALIMTAFGLFVAIPAVLAYNGFNRANRVELSELDGFAHDLHAYFTTGSRI 228          
BLAST of mRNA_P-wetherbeei_contig51528.1.1 vs. uniprot
Match: A0A8J2XV45_9BURK (Flagellar motor protein MotA n=1 Tax=Oxalicibacterium flavum TaxID=179467 RepID=A0A8J2XV45_9BURK)

HSP 1 Score: 194 bits (494), Expect = 2.640e-60
Identity = 97/130 (74.62%), Postives = 112/130 (86.15%), Query Frame = 1
Query:   10 TIGSNSDRGEFLIRALRQSIVRSTARLESGLTLLASIGSIAPFVGLFGTVWGIYHALLAISATGSASIDKISGPVGEALIMTAAGLFVAIPAVLAYNAFTRLNRIELAELDGFAHDLHAYLGTGARMGAR 399
            ++ +N+D GE + R LRQ I R +ARLESGLTLLAS+G+ APFVGLFGTVWGIYHAL+A+SATG+  IDK++GPVGEALIMTA GL VAIPAVLAYNAF R+NRI LAELD FAHDLHAYL TGAR+G R
Sbjct:  101 SLNANTDPGELITRTLRQEINRVSARLESGLTLLASVGATAPFVGLFGTVWGIYHALIAVSATGTVQIDKVAGPVGEALIMTALGLVVAIPAVLAYNAFVRVNRITLAELDAFAHDLHAYLTTGARVGQR 230          
BLAST of mRNA_P-wetherbeei_contig51528.1.1 vs. uniprot
Match: A0A410UQG5_9BURK (MotA/TolQ/ExbB proton channel family protein n=4 Tax=Burkholderiales TaxID=80840 RepID=A0A410UQG5_9BURK)

HSP 1 Score: 194 bits (493), Expect = 3.410e-60
Identity = 96/130 (73.85%), Postives = 112/130 (86.15%), Query Frame = 1
Query:    4 GKTIGSNSDRGEFLIRALRQSIVRSTARLESGLTLLASIGSIAPFVGLFGTVWGIYHALLAISATGSASIDKISGPVGEALIMTAAGLFVAIPAVLAYNAFTRLNRIELAELDGFAHDLHAYLGTGARMG 393
            G ++ +++D GE + R LRQ I R  ARLE+GLTLLAS+GS APFVGLFGTVWGIYHAL+A+S TG+  IDK++GPVGEALIMTA GL VAIPAVLAYNAFTR+NR+ LAELDGFAHDLHAYL TGAR+G
Sbjct:   98 GGSLNAHTDPGELITRTLRQEINRVAARLENGLTLLASVGSTAPFVGLFGTVWGIYHALMAVSTTGTVQIDKVAGPVGEALIMTALGLVVAIPAVLAYNAFTRVNRLTLAELDGFAHDLHAYLTTGARVG 227          
BLAST of mRNA_P-wetherbeei_contig51528.1.1 vs. uniprot
Match: UPI001D1132D9 (MotA/TolQ/ExbB proton channel family protein n=1 Tax=Nitrogeniibacter aestuarii TaxID=2815343 RepID=UPI001D1132D9)

HSP 1 Score: 194 bits (492), Expect = 8.650e-60
Identity = 96/140 (68.57%), Postives = 113/140 (80.71%), Query Frame = 1
Query:   10 TIGSNSDRGEFLIRALRQSIVRSTARLESGLTLLASIGSIAPFVGLFGTVWGIYHALLAISATGSASIDKISGPVGEALIMTAAGLFVAIPAVLAYNAFTRLNRIELAELDGFAHDLHAYLGTGARMGARPNIRVVEKEA 429
            T+GS  D GEF+ RALR++I   T  LE GLT+LASIG+ APFVGLFGTVWGIYHAL  IS +G+A+IDK++GPVGEALIMTA GLFVAIPAVLAYN F R NR+EL+ELDGFAHDLHA+  TGAR+G    ++ V K A
Sbjct:  102 TLGSKLDAGEFVTRALRRAIAECTGVLERGLTILASIGATAPFVGLFGTVWGIYHALTTISVSGAATIDKVAGPVGEALIMTAFGLFVAIPAVLAYNGFNRANRVELSELDGFAHDLHAFFTTGARVGTPTGVKPVAKRA 241          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51528.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001356D5519.010e-6471.83MotA/TolQ/ExbB proton channel family protein n=1 T... [more]
A0A6C1B1Y7_9RHOO7.160e-6271.74MotA/TolQ/ExbB proton channel family protein n=1 T... [more]
A0A6N6L6V9_9PROT4.220e-6177.95MotA/TolQ/ExbB proton channel family protein n=1 T... [more]
N6YMU3_THAL41.510e-6075.76Biopolymer transport protein ExbB n=1 Tax=Thauera ... [more]
UPI001BDBBE7A1.710e-6076.38MotA/TolQ/ExbB proton channel family protein n=1 T... [more]
UPI00124BC7A22.040e-6075.97MotA/TolQ/ExbB proton channel family protein n=1 T... [more]
A0A557R2E3_9RHOO2.420e-6075.97MotA/TolQ/ExbB proton channel family protein n=2 T... [more]
A0A8J2XV45_9BURK2.640e-6074.62Flagellar motor protein MotA n=1 Tax=Oxalicibacter... [more]
A0A410UQG5_9BURK3.410e-6073.85MotA/TolQ/ExbB proton channel family protein n=4 T... [more]
UPI001D1132D98.650e-6068.57MotA/TolQ/ExbB proton channel family protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51528contigP-wetherbeei_contig51528:9..443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1123367.C666_18845
PFAMsMotA_ExbB
Model size435
Max annot lvl206389|Rhodocyclales
KEGG koko:K03561
KEGG TC1.A.30.2.1
Hectar predicted targeting categorysignal anchor
Exons1
Evalue2.48e-61
EggNOG OGsCOG0811@1|root,COG0811@2|Bacteria,1NMPB@1224|Proteobacteria,2VJ4U@28216|Betaproteobacteria,2KV99@206389|Rhodocyclales
DescriptionMotA/TolQ/ExbB proton channel family
Cds size435
COG categoryU
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186774.1382816-CDS-P-wetherbeei_contig51528:8..4431683186774.1382816-CDS-P-wetherbeei_contig51528:8..443Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51528 9..443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51528.1.1prot_P-wetherbeei_contig51528.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51528 9..443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51528.1.1

>prot_P-wetherbeei_contig51528.1.1 ID=prot_P-wetherbeei_contig51528.1.1|Name=mRNA_P-wetherbeei_contig51528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
RGKTIGSNSDRGEFLIRALRQSIVRSTARLESGLTLLASIGSIAPFVGLF
GTVWGIYHALLAISATGSASIDKISGPVGEALIMTAAGLFVAIPAVLAYN
AFTRLNRIELAELDGFAHDLHAYLGTGARMGARPNIRVVEKEAR*
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mRNA from alignment at P-wetherbeei_contig51528:9..443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51528.1.1 ID=mRNA_P-wetherbeei_contig51528.1.1|Name=mRNA_P-wetherbeei_contig51528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig51528:9..443+ (Phaeothamnion wetherbeei SAG_119_79)
AGGGGCAAAACTATCGGCAGCAACTCGGATCGTGGGGAGTTCCTTATCCG CGCCTTGCGTCAGAGTATTGTGCGCAGCACAGCGCGGCTGGAATCCGGTC TGACGCTGCTTGCCTCCATTGGTTCCATTGCCCCATTCGTTGGCTTGTTC GGCACGGTATGGGGCATTTACCATGCGCTCCTTGCCATCTCTGCTACCGG CTCGGCTTCCATCGATAAAATATCCGGTCCGGTGGGGGAAGCGCTTATCA TGACGGCAGCAGGGCTGTTTGTCGCAATTCCTGCCGTGCTTGCCTACAAC GCTTTCACACGCCTGAACCGCATCGAGCTGGCGGAATTGGACGGTTTTGC TCATGACCTCCACGCTTATCTTGGTACAGGCGCGCGCATGGGAGCACGTC CCAATATTCGCGTCGTTGAGAAGGAGGCCAGATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51528:9..443+

>mRNA_P-wetherbeei_contig51528.1.1 ID=mRNA_P-wetherbeei_contig51528.1.1|Name=mRNA_P-wetherbeei_contig51528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig51528:9..443+ (Phaeothamnion wetherbeei SAG_119_79)
AGGGGCAAAACTATCGGCAGCAACTCGGATCGTGGGGAGTTCCTTATCCG
CGCCTTGCGTCAGAGTATTGTGCGCAGCACAGCGCGGCTGGAATCCGGTC
TGACGCTGCTTGCCTCCATTGGTTCCATTGCCCCATTCGTTGGCTTGTTC
GGCACGGTATGGGGCATTTACCATGCGCTCCTTGCCATCTCTGCTACCGG
CTCGGCTTCCATCGATAAAATATCCGGTCCGGTGGGGGAAGCGCTTATCA
TGACGGCAGCAGGGCTGTTTGTCGCAATTCCTGCCGTGCTTGCCTACAAC
GCTTTCACACGCCTGAACCGCATCGAGCTGGCGGAATTGGACGGTTTTGC
TCATGACCTCCACGCTTATCTTGGTACAGGCGCGCGCATGGGAGCACGTC
CCAATATTCGCGTCGTTGAGAAGGAGGCCAGATAA
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