mRNA_P-wetherbeei_contig5151.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5151.1.1
Unique NamemRNA_P-wetherbeei_contig5151.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5151.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5151contigP-wetherbeei_contig5151:1119..2425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1041
Hectar predicted targeting categoryother localisation
Exons2
Cds size669
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186774.008954-UTR-P-wetherbeei_contig5151:1118..14001683186774.008954-UTR-P-wetherbeei_contig5151:1118..1400Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5151 1119..1400 -
1683186774.038863-UTR-P-wetherbeei_contig5151:2335..24251683186774.038863-UTR-P-wetherbeei_contig5151:2335..2425Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5151 2336..2425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186774.0188234-CDS-P-wetherbeei_contig5151:1400..17721683186774.0188234-CDS-P-wetherbeei_contig5151:1400..1772Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5151 1401..1772 -
1683186774.0283554-CDS-P-wetherbeei_contig5151:2038..23351683186774.0283554-CDS-P-wetherbeei_contig5151:2038..2335Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5151 2039..2335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5151.1.1prot_P-wetherbeei_contig5151.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5151 1401..2335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5151.1.1

>prot_P-wetherbeei_contig5151.1.1 ID=prot_P-wetherbeei_contig5151.1.1|Name=mRNA_P-wetherbeei_contig5151.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=223bp
MKIGIAQVLAATKVGDKLPMEQVLLNLAERFGASGGGDGGGGGASATGGS
SDGGSATKKQKKALEVVCDENRSMAEAFKELANYAFKSGDKFKGVTYQRL
ARCTLCFLLSTHRPRDRASHSGGDDGGGMAGADDEGTTGRLRQGCRQGEL
REDHRVHQHGCAHQARGVPGQRLSNGPKRSASEMPEMVCGVVCPPVKALL
PGCVRPCRRRLRQRRHCNRRWR*
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mRNA from alignment at P-wetherbeei_contig5151:1119..2425-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5151.1.1 ID=mRNA_P-wetherbeei_contig5151.1.1|Name=mRNA_P-wetherbeei_contig5151.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1307bp|location=Sequence derived from alignment at P-wetherbeei_contig5151:1119..2425- (Phaeothamnion wetherbeei SAG_119_79)
GCCGAGAAGGAGGCACGCAAGGCGGTCGTGGACAGGACCGCGGACCTCTG
CCGAACACGCGGCGTCCGGCTGCCGGCCGACGAGAGCAACATGAAGATCG
GCATCGCGCAGGTCCTCGCCGCCACCAAGGTCGGCGACAAGCTGCCGATG
GAACAGGTGCTGCTCAACCTGGCGGAGCGCTTCGGCGCCTCCGGTGGCGG
TGACGGGGGCGGCGGTGGCGCCTCGGCGACCGGCGGCAGCAGCGACGGTG
GGAGCGCCACGAAGAAGCAGAAGAAGGCGCTCGAGGTGGTGTGCGACGAG
AACCGGTCGATGGCGGAGGCCTTCAAGGAACTCGCGAATTACGCGTTTAA
GTCGGGCGACAAGTTCAAAGGCGTCACCTACCAGCGGGTACGGCGTGTGC
GAATCTGGCGTTGGGGTTTCTTCTTGCCCGCTCGTTGGCTGACATCGCGT
TTTGCCCTTTGGATTTTCTTCCCACTTTTTCCAGTTGCTTATCCTGTGAT
CTGCTTTTGGGAATGGCGGCATAGAGGCGCGGCTTCAGCAACAGTTTCTG
TTGGGTACTAGTATGGAACGGAACCTCTTCCAATTTATCCTTGCTTTTAT
TCTAGTTGAAGTTGTTTGCGCTAGCTCTGTCAGCCGAGTGAACATCCGCA
CAGCTTGCCCGTTGCACCCTCTGCTTTCTGCTGTCTACGCACCGCCCGCG
GGACCGTGCGTCTCACTCAGGTGGCGACGACGGTGGCGGAATGGCCGGAG
CCGATGACGAAGGCACCACCGGTCGGCTCCGTCAAGGGTGTCGGCAAGGC
GAGCTGCGAGAAGATCACCGAGTTCATCAACACGGGTGCGCTCACCAAGC
TCGAGGAGTACCGGGCCAACGCCTGAGCAATGGTCCGAAACGGTCTGCCT
CTGAAATGCCCGAAATGGTCTGCGGAGTCGTCTGCCCGCCGGTCAAAGCT
CTTCTCCCGGGCTGCGTCAGGCCGTGCCGTCGTCGTCTCCGGCAGCGAAG
GCACTGTAACCGGCGGTGGCGCTGAGCGGAGCGCCGTCGCTGGTGCGGAG
CTGAAACCGCGGCGTGACAGGCAGCTCATGTGGGGCGTGCAGGCCGGACG
ACGTCGGGGAATGACGGCGTGACGTCGCCCAGAGCAGGTGCTGGACCGTG
GTTCCGGTCTGTAGCCGGGGCCGTGCTGGAGCCGAGCTGCGCTGCGAGCA
GTACGGACCGGTCTGGCCTCCATTCCGTGTGGCGCGACGGTGCTGCAGGC
GCCGGTGGTCCACTGTTTCACTGGTCATGTTTTTGGAGGAAAACTGCGCC
TGGGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5151:1119..2425-

>mRNA_P-wetherbeei_contig5151.1.1 ID=mRNA_P-wetherbeei_contig5151.1.1|Name=mRNA_P-wetherbeei_contig5151.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=669bp|location=Sequence derived from alignment at P-wetherbeei_contig5151:1119..2425- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGATCGGCATCGCGCAGGTCCTCGCCGCCACCAAGGTCGGCGACAA
GCTGCCGATGGAACAGGTGCTGCTCAACCTGGCGGAGCGCTTCGGCGCCT
CCGGTGGCGGTGACGGGGGCGGCGGTGGCGCCTCGGCGACCGGCGGCAGC
AGCGACGGTGGGAGCGCCACGAAGAAGCAGAAGAAGGCGCTCGAGGTGGT
GTGCGACGAGAACCGGTCGATGGCGGAGGCCTTCAAGGAACTCGCGAATT
ACGCGTTTAAGTCGGGCGACAAGTTCAAAGGCGTCACCTACCAGCGGCTT
GCCCGTTGCACCCTCTGCTTTCTGCTGTCTACGCACCGCCCGCGGGACCG
TGCGTCTCACTCAGGTGGCGACGACGGTGGCGGAATGGCCGGAGCCGATG
ACGAAGGCACCACCGGTCGGCTCCGTCAAGGGTGTCGGCAAGGCGAGCTG
CGAGAAGATCACCGAGTTCATCAACACGGGTGCGCTCACCAAGCTCGAGG
AGTACCGGGCCAACGCCTGAGCAATGGTCCGAAACGGTCTGCCTCTGAAA
TGCCCGAAATGGTCTGCGGAGTCGTCTGCCCGCCGGTCAAAGCTCTTCTC
CCGGGCTGCGTCAGGCCGTGCCGTCGTCGTCTCCGGCAGCGAAGGCACTG
TAACCGGCGGTGGCGCTGA
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