mRNA_P-wetherbeei_contig515.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig515.6.1
Unique NamemRNA_P-wetherbeei_contig515.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig515.6.1 vs. uniprot
Match: A0A353LN67_9PROT (Nitrogen regulatory protein P-II n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LN67_9PROT)

HSP 1 Score: 201 bits (511), Expect = 4.150e-65
Identity = 101/112 (90.18%), Postives = 110/112 (98.21%), Query Frame = 1 
Query:    1 MKLVMAIIKPFKLDEVREALTALGIEGMTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLKLELAISTDQVEAVVDAIVAAARTGQIGDGKIFVSPIDQVIRVRTGEKDADAL 336
            MKLVMAIIKPFKLDEVREALT LGIEG+TVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLK+E+A+++DQV+ VVDAIVAAA+TGQIGDGKIFVSPIDQV+RVRTGEKDADAL
Sbjct:    1 MKLVMAIIKPFKLDEVREALTGLGIEGLTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLKVEVAVASDQVDPVVDAIVAAAKTGQIGDGKIFVSPIDQVVRVRTGEKDADAL 112
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BLAST of mRNA_P-wetherbeei_contig515.6.1 vs. uniprot
Match: A0A562CKN9_9HYPH (Nitrogen regulatory protein P-II n=2 Tax=Phyllobacteriaceae TaxID=69277 RepID=A0A562CKN9_9HYPH)

HSP 1 Score: 186 bits (473), Expect = 2.590e-59
Identity = 91/112 (81.25%), Postives = 104/112 (92.86%), Query Frame = 1 
Query:    1 MKLVMAIIKPFKLDEVREALTALGIEGMTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLKLELAISTDQVEAVVDAIVAAARTGQIGDGKIFVSPIDQVIRVRTGEKDADAL 336
            MK+VMAIIKPFKLDEVREALTA+GI+G+TVTEVKGYGRQKGHTEIYRGAEYAVSFLPK+K+E+A+STD V+ VVDAI  AA+TGQIGDGKIFV P+DQ +R+RTGE D DAL
Sbjct:    1 MKIVMAIIKPFKLDEVREALTAVGIQGLTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKIKIEIAVSTDLVDKVVDAIGTAAKTGQIGDGKIFVYPLDQAVRIRTGETDTDAL 112
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BLAST of mRNA_P-wetherbeei_contig515.6.1 vs. uniprot
Match: A0A4R6RE94_9HYPH (Nitrogen regulatory protein P-II n=2 Tax=Pleomorphomonadaceae TaxID=2843308 RepID=A0A4R6RE94_9HYPH)

HSP 1 Score: 184 bits (468), Expect = 1.500e-58
Identity = 91/112 (81.25%), Postives = 105/112 (93.75%), Query Frame = 1 
Query:    1 MKLVMAIIKPFKLDEVREALTALGIEGMTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLKLELAISTDQVEAVVDAIVAAARTGQIGDGKIFVSPIDQVIRVRTGEKDADAL 336
            MK+VMAIIKPFKLDEVR+ALTALGI G+TVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLK+E+A++++QV+ VVDAIVAAA+TGQIGDGKIFV  I+Q +R+RTGE D DAL
Sbjct:    1 MKIVMAIIKPFKLDEVRDALTALGIHGLTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLKIEVAVASEQVDKVVDAIVAAAKTGQIGDGKIFVHAIEQAMRIRTGETDTDAL 112
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BLAST of mRNA_P-wetherbeei_contig515.6.1 vs. uniprot
Match: A0A4V3A7M7_9HYPH (Nitrogen regulatory protein P-II n=1 Tax=Pseudohoeflea suaedae TaxID=877384 RepID=A0A4V3A7M7_9HYPH)

HSP 1 Score: 182 bits (463), Expect = 8.660e-58
Identity = 88/112 (78.57%), Postives = 104/112 (92.86%), Query Frame = 1 
Query:    1 MKLVMAIIKPFKLDEVREALTALGIEGMTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLKLELAISTDQVEAVVDAIVAAARTGQIGDGKIFVSPIDQVIRVRTGEKDADAL 336
            MK+VMAIIKPFKLDEVREALTA+GI+G+TVTEVKGYGRQKGHTEIYRG EYAVSFLPKLK+E+A+++  VE+V+DA+ +AA+TGQIGDGKIFV  IDQ +R+RTGE DADAL
Sbjct:    1 MKIVMAIIKPFKLDEVREALTAIGIQGLTVTEVKGYGRQKGHTEIYRGTEYAVSFLPKLKIEIAVASSAVESVIDAVASAAKTGQIGDGKIFVYSIDQAMRIRTGETDADAL 112
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BLAST of mRNA_P-wetherbeei_contig515.6.1 vs. uniprot
Match: UPI001BC76DA1 (P-II family nitrogen regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI001BC76DA1)

HSP 1 Score: 182 bits (462), Expect = 1.230e-57
Identity = 88/112 (78.57%), Postives = 105/112 (93.75%), Query Frame = 1 
Query:    1 MKLVMAIIKPFKLDEVREALTALGIEGMTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLKLELAISTDQVEAVVDAIVAAARTGQIGDGKIFVSPIDQVIRVRTGEKDADAL 336
            MK+VMAIIKPFKL+EVR+ALTA+G+ G+TVTEVKGYGRQKGHTEIYRGAEYAV+FLPKLK+E+AI+TDQV+ V+DAI  AA+TGQIGDGKIFV  IDQ +R+RTGE++ADAL
Sbjct:    1 MKIVMAIIKPFKLEEVRDALTAIGVHGLTVTEVKGYGRQKGHTEIYRGAEYAVNFLPKLKVEVAIATDQVKKVIDAITGAAKTGQIGDGKIFVFSIDQAVRIRTGEQNADAL 112
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BLAST of mRNA_P-wetherbeei_contig515.6.1 vs. uniprot
Match: A0A1X7PZN7_9HYPH (Nitrogen regulatory protein P-II n=3 Tax=Phyllobacteriaceae TaxID=69277 RepID=A0A1X7PZN7_9HYPH)

HSP 1 Score: 182 bits (461), Expect = 1.750e-57
Identity = 89/112 (79.46%), Postives = 102/112 (91.07%), Query Frame = 1 
Query:    1 MKLVMAIIKPFKLDEVREALTALGIEGMTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLKLELAISTDQVEAVVDAIVAAARTGQIGDGKIFVSPIDQVIRVRTGEKDADAL 336
            MK+VMAIIKPFKLDEVREALTA+GI+G+TVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLK+E+A+S+D  E  V+AI  AA+TGQIGDGKIFV PI+Q +R+RTGE D DAL
Sbjct:    1 MKIVMAIIKPFKLDEVREALTAVGIQGLTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLKIEIAVSSDMAEKAVEAISGAAKTGQIGDGKIFVYPIEQAVRIRTGETDNDAL 112
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BLAST of mRNA_P-wetherbeei_contig515.6.1 vs. uniprot
Match: A0A1W6ZPF7_9HYPH (Nitrogen regulatory protein P-II n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZPF7_9HYPH)

HSP 1 Score: 182 bits (461), Expect = 1.750e-57
Identity = 88/112 (78.57%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:    1 MKLVMAIIKPFKLDEVREALTALGIEGMTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLKLELAISTDQVEAVVDAIVAAARTGQIGDGKIFVSPIDQVIRVRTGEKDADAL 336
            MKLV+AIIKPFKLDEVR+AL A+G+ GMTVTEVKGYGRQKGHTEIYRGAEYAV+FLPK++LE+A+S+DQ E VVDA+ AAARTGQIGDGK+FV+ ID+ IR+RTGE D DAL
Sbjct:    1 MKLVIAIIKPFKLDEVRDALNAIGVHGMTVTEVKGYGRQKGHTEIYRGAEYAVNFLPKVRLEIAVSSDQAEKVVDAVSAAARTGQIGDGKVFVTAIDRAIRIRTGETDTDAL 112
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BLAST of mRNA_P-wetherbeei_contig515.6.1 vs. uniprot
Match: A0A2C9DBL9_9HYPH (Nitrogen regulatory protein P-II n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2C9DBL9_9HYPH)

HSP 1 Score: 182 bits (461), Expect = 1.750e-57
Identity = 88/112 (78.57%), Postives = 102/112 (91.07%), Query Frame = 1 
Query:    1 MKLVMAIIKPFKLDEVREALTALGIEGMTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLKLELAISTDQVEAVVDAIVAAARTGQIGDGKIFVSPIDQVIRVRTGEKDADAL 336
            MK++MAIIKPFKLDEVR+ALTA+G+ G+TVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLK+E+A+ TDQ E VV+AI +AA+TGQIGDGKIFV  IDQ +R+RTGE D DAL
Sbjct:    1 MKIIMAIIKPFKLDEVRDALTAIGVHGLTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLKVEVAVPTDQTEKVVEAITSAAKTGQIGDGKIFVYGIDQAVRIRTGETDTDAL 112
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BLAST of mRNA_P-wetherbeei_contig515.6.1 vs. uniprot
Match: A0A7V9S9M6_9PROT (Nitrogen regulatory protein P-II n=6 Tax=Bacteria TaxID=2 RepID=A0A7V9S9M6_9PROT)

HSP 1 Score: 182 bits (461), Expect = 1.750e-57
Identity = 86/112 (76.79%), Postives = 105/112 (93.75%), Query Frame = 1 
Query:    1 MKLVMAIIKPFKLDEVREALTALGIEGMTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLKLELAISTDQVEAVVDAIVAAARTGQIGDGKIFVSPIDQVIRVRTGEKDADAL 336
            MKL+ AIIKPFKLDEVRE+L+ALG++GMTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLK+E+A+ ++ ++AVVDAI + A+TGQIGDGKIFV+P++QV+R+RTGE D DAL
Sbjct:    1 MKLITAIIKPFKLDEVRESLSALGVQGMTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLKIEVAVKSEMLDAVVDAITSKAKTGQIGDGKIFVTPLEQVVRIRTGETDGDAL 112
[Close]
BLAST of mRNA_P-wetherbeei_contig515.6.1 vs. uniprot
Match: A0A371WR49_9HYPH (Nitrogen regulatory protein P-II n=5 Tax=Hyphomicrobiales TaxID=356 RepID=A0A371WR49_9HYPH)

HSP 1 Score: 182 bits (461), Expect = 1.750e-57
Identity = 88/112 (78.57%), Postives = 104/112 (92.86%), Query Frame = 1 
Query:    1 MKLVMAIIKPFKLDEVREALTALGIEGMTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLKLELAISTDQVEAVVDAIVAAARTGQIGDGKIFVSPIDQVIRVRTGEKDADAL 336
            MK+VMAIIKPFKL+EVR+ALTA+G+ G+TVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLK+E+A++   V+ VV+AI A ARTGQIGDGKIFV+P++Q IR+RTGEKDADAL
Sbjct:    1 MKIVMAIIKPFKLEEVRDALTAIGVHGLTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKLKIEVAVAASLVDQVVEAISATARTGQIGDGKIFVTPLEQAIRIRTGEKDADAL 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig515.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A353LN67_9PROT4.150e-6590.18Nitrogen regulatory protein P-II n=2 Tax=Alphaprot... [more]
A0A562CKN9_9HYPH2.590e-5981.25Nitrogen regulatory protein P-II n=2 Tax=Phyllobac... [more]
A0A4R6RE94_9HYPH1.500e-5881.25Nitrogen regulatory protein P-II n=2 Tax=Pleomorph... [more]
A0A4V3A7M7_9HYPH8.660e-5878.57Nitrogen regulatory protein P-II n=1 Tax=Pseudohoe... [more]
UPI001BC76DA11.230e-5778.57P-II family nitrogen regulator n=1 Tax=Hyphomicrob... [more]
A0A1X7PZN7_9HYPH1.750e-5779.46Nitrogen regulatory protein P-II n=3 Tax=Phyllobac... [more]
A0A1W6ZPF7_9HYPH1.750e-5778.57Nitrogen regulatory protein P-II n=1 Tax=Pseudorho... [more]
A0A2C9DBL9_9HYPH1.750e-5778.57Nitrogen regulatory protein P-II n=2 Tax=Hyphomicr... [more]
A0A7V9S9M6_9PROT1.750e-5776.79Nitrogen regulatory protein P-II n=6 Tax=Bacteria ... [more]
A0A371WR49_9HYPH1.750e-5778.57Nitrogen regulatory protein P-II n=5 Tax=Hyphomicr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig515contigP-wetherbeei_contig515:5815..6153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1287276.X752_06745
Preferred nameglnK
PFAMsP-II
Model size339
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K04751,ko:K04752
KEGG Pathwayko02020,map02020
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.99e-59
EggNOG OGsCOG0347@1|root,COG0347@2|Bacteria,1RGWK@1224|Proteobacteria,2U952@28211|Alphaproteobacteria,43K0V@69277|Phyllobacteriaceae
DescriptionBelongs to the P(II) protein family
Cds size339
COG categoryK
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186773.6448104-CDS-P-wetherbeei_contig515:5814..61531683186773.6448104-CDS-P-wetherbeei_contig515:5814..6153Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig515 5815..6153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig515.6.1prot_P-wetherbeei_contig515.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig515 5815..6153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig515.6.1

>prot_P-wetherbeei_contig515.6.1 ID=prot_P-wetherbeei_contig515.6.1|Name=mRNA_P-wetherbeei_contig515.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
MKLVMAIIKPFKLDEVREALTALGIEGMTVTEVKGYGRQKGHTEIYRGAE
YAVSFLPKLKLELAISTDQVEAVVDAIVAAARTGQIGDGKIFVSPIDQVI
RVRTGEKDADAL*
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mRNA from alignment at P-wetherbeei_contig515:5815..6153+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig515.6.1 ID=mRNA_P-wetherbeei_contig515.6.1|Name=mRNA_P-wetherbeei_contig515.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig515:5815..6153+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAACTCGTAATGGCTATCATCAAGCCTTTCAAGCTGGACGAAGTGCG
TGAGGCGCTGACCGCCTTGGGCATAGAGGGCATGACCGTAACCGAAGTAA
AGGGTTACGGACGGCAAAAGGGCCACACGGAAATCTACCGTGGCGCGGAA
TATGCGGTCAGCTTCTTGCCGAAACTGAAACTGGAACTGGCGATTTCCAC
CGATCAGGTTGAGGCCGTGGTTGACGCCATCGTCGCTGCCGCCCGCACCG
GGCAGATCGGCGATGGTAAAATTTTCGTTTCCCCCATTGATCAGGTCATC
CGTGTGCGCACAGGCGAAAAAGACGCCGACGCGCTGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig515:5815..6153+

>mRNA_P-wetherbeei_contig515.6.1 ID=mRNA_P-wetherbeei_contig515.6.1|Name=mRNA_P-wetherbeei_contig515.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig515:5815..6153+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAACTCGTAATGGCTATCATCAAGCCTTTCAAGCTGGACGAAGTGCG
TGAGGCGCTGACCGCCTTGGGCATAGAGGGCATGACCGTAACCGAAGTAA
AGGGTTACGGACGGCAAAAGGGCCACACGGAAATCTACCGTGGCGCGGAA
TATGCGGTCAGCTTCTTGCCGAAACTGAAACTGGAACTGGCGATTTCCAC
CGATCAGGTTGAGGCCGTGGTTGACGCCATCGTCGCTGCCGCCCGCACCG
GGCAGATCGGCGATGGTAAAATTTTCGTTTCCCCCATTGATCAGGTCATC
CGTGTGCGCACAGGCGAAAAAGACGCCGACGCGCTGTAA
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