mRNA_P-wetherbeei_contig51471.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51471.2.1
Unique NamemRNA_P-wetherbeei_contig51471.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51471.2.1 vs. uniprot
Match: A0A7X1TWE9_9PROT (PEP-CTERM sorting domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1TWE9_9PROT)

HSP 1 Score: 138 bits (347), Expect = 1.130e-34
Identity = 78/170 (45.88%), Postives = 108/170 (63.53%), Query Frame = 1
Query:    1 FNDGTRFVGL--NRVTGNARFVGDIASNDLRFV-SGVQTGGDGSAGSFGRLTGQVEWQAGDLNGQFEVASGATLSANIAGSKRQVGSLLVNNGTIAWNSAANMDGGNSARLVNHGRLEITSDADVQWGFGGQMQVDNDGLLIKSAGAGDTSLATLALSNTGIIDVRTGSI 501
            FNDGTRF G   + V+ +ARFVG   S +L F   GV+ GGD + GS     G +EW+ G+L G +EVASG+TL+A   G+K Q G  ++N GT+AW S A++   N AR  N G  ++++DAD+    G      N+G  +KS G+G+TSLA +  SNTG IDVR+G+I
Sbjct:  623 FNDGTRFTGAGTHTVSNDARFVGAFRSANLVFAPGGVRFGGDATTGSKAIAQGTLEWRGGELQGDWEVASGSTLAATGTGAKTQRGGSVLNKGTVAWKSDASLQTANGARFTNDGVFDVSTDADLAHATGMPGAFVNNGRFVKSGGSGETSLAGVTFSNTGAIDVRSGTI 792          
BLAST of mRNA_P-wetherbeei_contig51471.2.1 vs. uniprot
Match: UPI001990AAC6 (PEP-CTERM sorting domain-containing protein n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=UPI001990AAC6)

HSP 1 Score: 97.4 bits (241), Expect = 9.960e-21
Identity = 63/156 (40.38%), Postives = 85/156 (54.49%), Query Frame = 1
Query:   37 VTGNARFVGDIASNDLRFVSGVQTGGDG-SAGSFGRLTGQVEWQAGDLNGQFEVASGATLSANIAGSKRQVGSLLVNNGTIAWNSAANMDGGNSARLVNHGRLEITSDADVQWGFGGQMQVDNDGLLIKSAGAGDTSLATLALSNTGIIDVRTGSI 501
            VT NA F G   + +L   SG  TGGDG + GS   L G V +  G L G ++VA G TL+A    SK    + L N GT+AW                   +++ SDA +Q+  G Q    N GLL+KSAG G ++L+T+ LSNTG I+V+TG+I
Sbjct:   94 VTNNASFFGSFTAQNLALQSGTFTGGDGVTPGSQAVLNGHVAFTGGQLTGNWQVAPGQTLTAKDGSSKFIANATLTNQGTLAWXXXXXXXXXXXXXXXXX-XVDLQSDALMQYYSGSQPAFVNSGLLVKSAGTGTSNLSTVVLSNTGTIEVQTGTI 248          
BLAST of mRNA_P-wetherbeei_contig51471.2.1 vs. uniprot
Match: B9X9S2_PEDPL (Fibronectin type III domain protein n=1 Tax=Pedosphaera parvula (strain Ellin514) TaxID=320771 RepID=B9X9S2_PEDPL)

HSP 1 Score: 61.6 bits (148), Expect = 5.970e-8
Identity = 45/157 (28.66%), Postives = 72/157 (45.86%), Query Frame = 1
Query:   37 VTGNARFVGDIASNDLRFVSGVQTGGDGSAGSFGRLTGQVEWQAGDLNGQFEVASGATLSANIAGSKRQVGSLLVNNGTIAWNSAANMDGGNSARLVNHGRLEITSDADVQ--WGFGGQMQVDNDGLLIKSAGAGDTSLATLALSNTGIIDVRTGSI 501
            V+  A F    A  +L  V     G +  AG+F        W  G L+G   V S   ++ +    K   G+ L NNGT+ W S   + G  S+ + N+G   + +D ++   +G  G +   N G   K    G T+   +  SN+GI+DV++G+I
Sbjct: 2507 VSPGAAFQNGGAITNLTIVGSTLIGSNSVAGTF-------NWIDGKLSGSLTVISNGLITISGGSDKDMPGAWLANNGTVLWQSGR-IRGNASSSITNNGLWLVQNDYEMNNDYGGSGNLSFVNTGTFRKQTTFGGTAFKNVPFSNSGILDVQSGTI 2655          
BLAST of mRNA_P-wetherbeei_contig51471.2.1 vs. uniprot
Match: A0A7Y4VDK6_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7Y4VDK6_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 4.860e-7
Identity = 52/173 (30.06%), Postives = 83/173 (47.98%), Query Frame = 1
Query:    1 FNDGTRFVGLNR---VTGNARFVGDIASNDLRFVSGVQTGGDGSAGSFGRLTGQVEWQAGDLNGQFEVASGATLSANIAGSKRQVGSLLVNN-GTIAWNS--AANMDGGNSARLVNHGRLEITSDADVQWGFGGQMQVDNDGLLIKSAGAGDTSLATLALSNTGIIDVRTGSI 501
            FN  + F G        G     G + S +L   +GV   G  +      L+G ++W  G ++G   +A+  TL  NI G+   + S  +NN G + W+   A  M+ G+   L   G  EI ++  + + +G    V+N G++ KSAG GDT    + L NTG +DV +G +
Sbjct:  249 FNSDSAFTGTGTNYLYNGTVTLNGPLTSQNLEIATGVTVTGTHT------LSGAIQWTGGTISGAMTIATNGTL--NIMGTADHMLSGTLNNQGLMLWSGVHAFLMNNGHINNLTG-GLFEIQNNQTLSFYYGAP-NVNNSGIIRKSAGGGDTVFG-VPLINTGTLDVLSGRV 410          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51471.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7X1TWE9_9PROT1.130e-3445.88PEP-CTERM sorting domain-containing protein n=1 Ta... [more]
UPI001990AAC69.960e-2140.38PEP-CTERM sorting domain-containing protein n=1 Ta... [more]
B9X9S2_PEDPL5.970e-828.66Fibronectin type III domain protein n=1 Tax=Pedosp... [more]
A0A7Y4VDK6_9BACT4.860e-730.06Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51471contigP-wetherbeei_contig51471:3..503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog272123.Anacy_5220
PFAMsCalx-beta,Laminin_G_3,PATR
Model size501
Max annot lvl2|Bacteria
KEGG koko:K01179,ko:K07004
KEGG ReactionR06200,R11307,R11308
KEGG Pathwayko00500,ko01100,map00500,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000405
EggNOG OGsCOG2931@1|root,COG4625@1|root,COG2931@2|Bacteria,COG4625@2|Bacteria
EC3.2.1.4
Descriptionpathogenesis
Cds size501
COG categoryT
CAZyGH5,GH9
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186773.2269044-CDS-P-wetherbeei_contig51471:2..5031683186773.2269044-CDS-P-wetherbeei_contig51471:2..503Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51471 3..503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51471.2.1prot_P-wetherbeei_contig51471.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51471 3..503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51471.2.1

>prot_P-wetherbeei_contig51471.2.1 ID=prot_P-wetherbeei_contig51471.2.1|Name=mRNA_P-wetherbeei_contig51471.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
FNDGTRFVGLNRVTGNARFVGDIASNDLRFVSGVQTGGDGSAGSFGRLTG
QVEWQAGDLNGQFEVASGATLSANIAGSKRQVGSLLVNNGTIAWNSAANM
DGGNSARLVNHGRLEITSDADVQWGFGGQMQVDNDGLLIKSAGAGDTSLA
TLALSNTGIIDVRTGSI
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mRNA from alignment at P-wetherbeei_contig51471:3..503-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51471.2.1 ID=mRNA_P-wetherbeei_contig51471.2.1|Name=mRNA_P-wetherbeei_contig51471.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig51471:3..503- (Phaeothamnion wetherbeei SAG_119_79)
TTCAACGATGGTACGCGCTTCGTCGGGCTCAACCGGGTGACGGGCAACGC GCGGTTCGTTGGAGACATTGCCTCCAATGATCTGCGCTTCGTCAGCGGTG TACAGACTGGCGGTGACGGCTCGGCCGGTTCATTCGGGCGGCTTACTGGC CAGGTGGAGTGGCAGGCGGGCGATCTGAATGGCCAGTTCGAGGTTGCGAG CGGCGCGACCTTGTCTGCCAATATTGCCGGCAGCAAACGCCAGGTCGGAT CGCTGCTGGTCAATAACGGCACCATTGCGTGGAACAGCGCTGCCAATATG GATGGCGGCAATAGTGCGCGTCTGGTCAACCACGGTCGCCTTGAGATCAC CAGCGATGCCGATGTGCAGTGGGGTTTCGGTGGTCAGATGCAGGTCGACA ACGATGGCCTGTTGATCAAGAGCGCTGGCGCTGGCGACACCTCCCTGGCC ACCCTCGCGCTCAGCAACACCGGCATCATCGATGTGCGTACAGGATCTAT C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51471:3..503-

>mRNA_P-wetherbeei_contig51471.2.1 ID=mRNA_P-wetherbeei_contig51471.2.1|Name=mRNA_P-wetherbeei_contig51471.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig51471:3..503- (Phaeothamnion wetherbeei SAG_119_79)
TTCAACGATGGTACGCGCTTCGTCGGGCTCAACCGGGTGACGGGCAACGC
GCGGTTCGTTGGAGACATTGCCTCCAATGATCTGCGCTTCGTCAGCGGTG
TACAGACTGGCGGTGACGGCTCGGCCGGTTCATTCGGGCGGCTTACTGGC
CAGGTGGAGTGGCAGGCGGGCGATCTGAATGGCCAGTTCGAGGTTGCGAG
CGGCGCGACCTTGTCTGCCAATATTGCCGGCAGCAAACGCCAGGTCGGAT
CGCTGCTGGTCAATAACGGCACCATTGCGTGGAACAGCGCTGCCAATATG
GATGGCGGCAATAGTGCGCGTCTGGTCAACCACGGTCGCCTTGAGATCAC
CAGCGATGCCGATGTGCAGTGGGGTTTCGGTGGTCAGATGCAGGTCGACA
ACGATGGCCTGTTGATCAAGAGCGCTGGCGCTGGCGACACCTCCCTGGCC
ACCCTCGCGCTCAGCAACACCGGCATCATCGATGTGCGTACAGGATCTAT
C
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